MD08G1155500.v1.1

PhoX homologous domain, present in p47phox and p40phox.

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr08
Physical Location & Seq
Reverse (-)
17293835 .. 17298522
4688 bp
Loading structure...
UTR
Exon/CDS
Intron
MD08G1155500.v1.1.491

Sequence Viewer

Length: 1716 bp
ATGCAGAGACGGAGTCCGCCGAAGCACAGGCACGATGGGACTTCGCCGCTGCCGCTTGGGATGGATTGGAGTCCTCCTCCTCGGAAATGGAATGGACAGGACACAGTCTGGCCACATGATCCTCGCACTGGATGGAGTTATTGTGTCGCTATACCTTCGTGGGTTGCCCTTCCAAAATCAAGAAATTCCGATCCCGTAGTGTTCTACAGGGTTCAGGTTGGTGTACAATCACCAGAAGGTATTACAACTACAAGTGGGGTGTTAAGAAGATTTAATGATTTTCTGAAGTTATTTAGTGATCTTAAAAAGGCATTTCCCAAGAAAAATCTCCCACCAACTCCATCCAAGGGACTTCTGCGGATGAAGAGCCGGGAACTGTTGGAAGAGAGAAGGTGTTCGTTGGAGGCTTGGATGACAAAGCTGCTATCGGATATTGATATATCAAGAAGCGTTGCAGTGGCATCCTTTCTTGAACTAGAGTCTGCAGCTAGATCTTCGTTCCAAGATGCAAGCCAAAACACGTCAGACTCGAGTTCACTTCAATCACCTTCCTATTCTACCTTACCTGCCATTGTAGGGAGTTCATCAATCACATCAGATTATGGAAGTGATACTGCTTATGAGACTTCTGAGCTAGGAACCCCAAGGCTAGGAAGGGATGACAGTTCTGAAATTGGTATCGAAGATCTGGTATTGGATGAAGATTTAACAAGCCCAATAGAAAAGCTTGTGAAGTATGGCATGACCAATATTGACGAGGGACTGTTTATGGGACAAACTATACTAGAGCAGTTGGAAGGCCTTCCTAAGCATAAAGTAAATGTGGGACATGTCAATAATGTTGTAGGGAAAAATACATATAATGGAAATGCTTCTAAATCTTCAATTCTAGCTTGTAATGGAATGGAACTTTTCTCTGAGCCAGAGCATAGTAAAGTATTCAACCATGCTCGCAAGCTCTCAAATGAAAGTGTGGGAAGTGATGCCAGTTCTCTAAGAGGTAGTGAAATGTCCAACTCTGGTGTTCCTAACTCATCTGGTGATGGTTCTCTTGACCTTCTTGGAGGTGCTGAGGTTTCAAGCATTATGGAAATGCTTGGCAACACAGAGTTACAACCTTCAGGTGGCACTCAACTAGTTCTCCCATTAGATCAGCGAAACAAATTAAACAGGGTTCTCTCGACCATGCAGCGAAGACTAGTCACAGCAAAAACAGACATGGAAGATCTTATATCTAGACTAAATCAAGAAATAGCAGTGAAAGATTACCTTGCAACAAAGGTCAAGGATTTGGAAGTTGAACTTGAAACTACTAGACAAAAGAGTAAAGAGAACCTGCAGCAAGCTATTTTAATTGAGAGGGAAAGGTTTACCAAAATGCAGTGGGATATGGAGGAACTCCGGCGGAAGTCATTGGAAATGGAGTTGAAGTTGAAGTTGGAACAGGATAAGAAGTCAACAAAAGATTCATCTGGTCAAGAGAAAGAGATATTGCCGCAGGAGTTGGATCCGTACAAGGAGCAGCTTGAAAATTTGTCAAAGCGATATGAAGAGCTAGAAGCAAAATCTAAAGCAGATATTAAAGTTCTTGTTAAAGAAGTTAAATCCTTGCGCAGTTCTCAAGCAGGACTGAAACATGAACTTAGCAAATCGCTGACGGAGAAATCTGAAGCTGAGATAATTGAAGCTCCGCCAACAGGAAAAACAAACGAGTAA

Protein Analysis

572

Amino Acids

63.6

Weight (kDa)

5.77

Isoelectric Point (pI)

54.2

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PX PF00787 83 - 158 3.3e-14 PX domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 1613
Acc36I ACCTGC 2 cut(s) 574, 1344
AciI CCGC 7 cut(s) 17, 47, 53, 358, 1405, 1496, 1691
AclWI GGATC 4 cut(s) 113, 185, 1502, 1515
AcoI YGGCCR 1 cut(s) 110
AcsI RAATTY 2 cut(s) 184, 1531
AcuI CTGAAG 3 cut(s) 305, 1104, 1689
AfaI GTAC 2 cut(s) 225, 1514
AfiI CCNNNNNNNGG 6 cut(s) 128, 347, 576, 650, 1124, 1697
AflIII ACRYGT 2 cut(s) 519, 829
AhlI ACTAGT 2 cut(s) 1135, 1198
AjiI CACGTC 1 cut(s) 522
AjuI GAANNNNNNNTTGG 2 cut(s) 1421, 1453
Alw26I GTCTC 1 cut(s) 617
AlwI GGATC 4 cut(s) 113, 185, 1502, 1515
Ama87I CYCGRG 1 cut(s) 529
AoxI GGCC 2 cut(s) 110, 799
ApeKI GCWGC 6 cut(s) 49, 421, 485, 1189, 1339, 1522
ApoI RAATTY 2 cut(s) 184, 1531
Asp700I GAANNNNTTC 3 cut(s) 394, 801, 871
AspLEI GCGC 1 cut(s) 1614
AsuC2I CCSGG 1 cut(s) 371
AsuHPI GGTGA 3 cut(s) 222, 537, 1052
AvaI CYCGRG 1 cut(s) 529
BalI TGGCCA 1 cut(s) 112
BamHI GGATCC 1 cut(s) 1507
BbsI GAAGAC 1 cut(s) 1201
BbvCI CCTCAGC 1 cut(s) 1071
BbvI GCAGC 6 cut(s) 36, 408, 497, 1201, 1351, 1534
BccI CCATC 5 cut(s) 29, 55, 126, 349, 1037
BcnI CCSGG 1 cut(s) 371
BcoDI GTCTC 1 cut(s) 617
BcuI ACTAGT 2 cut(s) 1135, 1198
BfmI CTRYAG 3 cut(s) 205, 483, 1337
BfuAI ACCTGC 2 cut(s) 574, 1344
BglII AGATCT 3 cut(s) 491, 685, 1225
BisI GCNGC 9 cut(s) 47, 50, 53, 422, 486, 1190, 1340, 1496, 1523
BlsI GCNGC 9 cut(s) 48, 51, 54, 423, 487, 1191, 1341, 1497, 1524
Bme1390I CCNGG 1 cut(s) 371
BmeT110I CYCGRG 1 cut(s) 529
BmgBI CACGTC 1 cut(s) 522
BmiI GGNNCC 2 cut(s) 640, 1509
BmrFI CCNGG 1 cut(s) 371
BmsI GCATC 3 cut(s) 470, 496, 973
BpiI GAAGAC 1 cut(s) 1201
BplI GAGNNNNNCTC 2 cut(s) 61, 93
Bpu10I CCTNAGC 2 cut(s) 807, 1071
BpuEI CTTGAG 1 cut(s) 1605
BpuMI CCSGG 1 cut(s) 371
BsaJI CCNNGG 3 cut(s) 80, 345, 644
BsaXI ACNNNNNCTCC 6 cut(s) 127, 157, 1125, 1155, 1415, 1445
Bsc4I CCNNNNNNNGG 6 cut(s) 128, 347, 576, 650, 1124, 1697
Bse1I ACTGG 2 cut(s) 133, 987
BseDI CCNNGG 3 cut(s) 80, 345, 644
BseGI GGATG 8 cut(s) 66, 137, 341, 366, 417, 461, 664, 703
BseLI CCNNNNNNNGG 6 cut(s) 128, 347, 576, 650, 1124, 1697
BseMII CTCAG 4 cut(s) 621, 909, 1062, 1665
BseNI ACTGG 2 cut(s) 133, 987
BseRI GAGGAG 2 cut(s) 66, 69
BseXI GCAGC 6 cut(s) 36, 408, 497, 1201, 1351, 1534
BshFI GGCC 2 cut(s) 112, 801
BsiHKCI CYCGRG 1 cut(s) 529
BsiSI CCGG 2 cut(s) 370, 1402
BslFI GGGAC 5 cut(s) 52, 363, 774, 786, 840
BslI CCNNNNNNNGG 6 cut(s) 128, 347, 576, 650, 1124, 1697
BsmAI GTCTC 1 cut(s) 617
BsmFI GGGAC 5 cut(s) 52, 363, 774, 786, 840
BsnI GGCC 2 cut(s) 112, 801
BsoBI CYCGRG 1 cut(s) 529
Bsp1407I TGTACA 1 cut(s) 223
Bsp143I GATC 8 cut(s) 118, 190, 298, 491, 685, 1150, 1225, 1507
BspACI CCGC 7 cut(s) 17, 47, 53, 358, 1405, 1496, 1691
BspANI GGCC 2 cut(s) 112, 801
BspCNI CTCAG 4 cut(s) 622, 910, 1063, 1666
BspLI GGNNCC 2 cut(s) 640, 1509
BspMAI CTGCAG 2 cut(s) 487, 1341
BspMI ACCTGC 2 cut(s) 574, 1344
BspPI GGATC 4 cut(s) 113, 185, 1502, 1515
BspQI GCTCTTC 2 cut(s) 359, 1545
BsrGI TGTACA 1 cut(s) 223
BsrI ACTGG 2 cut(s) 133, 987
BssECI CCNNGG 3 cut(s) 80, 345, 644
BssMI GATC 8 cut(s) 118, 190, 298, 491, 685, 1150, 1225, 1507
BssT1I CCWWGG 2 cut(s) 345, 644
Bst4CI ACNGT 4 cut(s) 106, 378, 665, 765
Bst6I CTCTTC 3 cut(s) 359, 378, 1545
BstAUI TGTACA 1 cut(s) 223
BstC8I GCNNGC 4 cut(s) 511, 952, 956, 1344
BstDEI CTNAG 7 cut(s) 630, 807, 918, 995, 1071, 1643, 1674
BstF5I GGATG 8 cut(s) 66, 137, 341, 366, 417, 461, 664, 703
BstHHI GCGC 1 cut(s) 1614
BstKTI GATC 8 cut(s) 121, 193, 301, 494, 688, 1153, 1228, 1510
BstMAI GTCTC 1 cut(s) 617
BstMBI GATC 8 cut(s) 118, 190, 298, 491, 685, 1150, 1225, 1507
BstMWI GCNNNNNNNGC 1 cut(s) 52
BstNSI RCATGY 1 cut(s) 833
BstSCI CCNGG 1 cut(s) 369
BstSFI CTRYAG 3 cut(s) 205, 483, 1337
BstV1I GCAGC 6 cut(s) 36, 408, 497, 1201, 1351, 1534
BstV2I GAAGAC 1 cut(s) 1201
BstX2I RGATCY 4 cut(s) 491, 685, 1225, 1507
BstYI RGATCY 4 cut(s) 491, 685, 1225, 1507
BsuRI GGCC 2 cut(s) 112, 801
BtrI CACGTC 1 cut(s) 522
BtsCI GGATG 8 cut(s) 66, 137, 341, 366, 417, 461, 664, 703
BtsI GCAGTG 3 cut(s) 462, 1263, 1388
BtsIMutI CAGTG 4 cut(s) 126, 462, 1263, 1388
BveI ACCTGC 2 cut(s) 574, 1344
Cac8I GCNNGC 4 cut(s) 511, 952, 956, 1344
CfoI GCGC 1 cut(s) 1614
Csp6I GTAC 2 cut(s) 224, 1513
CviAII CATG 7 cut(s) 116, 742, 830, 947, 1186, 1219, 1637
CviQI GTAC 2 cut(s) 224, 1513
DdeI CTNAG 7 cut(s) 630, 807, 918, 995, 1071, 1643, 1674
DpnI GATC 8 cut(s) 120, 192, 300, 493, 687, 1152, 1227, 1509
DpnII GATC 8 cut(s) 118, 190, 298, 491, 685, 1150, 1225, 1507
EaeI YGGCCR 1 cut(s) 110
Eam1104I CTCTTC 3 cut(s) 359, 378, 1545
EarI CTCTTC 3 cut(s) 359, 378, 1545
EciI GGCGGA 3 cut(s) 6, 1420, 1680
Eco130I CCWWGG 2 cut(s) 345, 644
Eco147I AGGCCT 1 cut(s) 801
Eco57I CTGAAG 3 cut(s) 305, 1104, 1689
Eco88I CYCGRG 1 cut(s) 529
EcoT14I CCWWGG 2 cut(s) 345, 644
ErhI CCWWGG 2 cut(s) 345, 644
FaeI CATG 7 cut(s) 119, 745, 833, 950, 1189, 1222, 1640
FalI AAGNNNNNCTT 4 cut(s) 1254, 1286, 1287, 1319
FaqI GGGAC 5 cut(s) 52, 363, 774, 786, 840
FatI CATG 7 cut(s) 115, 741, 829, 946, 1185, 1218, 1636
Fnu4HI GCNGC 9 cut(s) 47, 50, 53, 422, 486, 1190, 1340, 1496, 1523
FokI GGATG 8 cut(s) 73, 144, 328, 373, 424, 448, 671, 710
Fsp4HI GCNGC 9 cut(s) 47, 50, 53, 422, 486, 1190, 1340, 1496, 1523
FspI TGCGCA 1 cut(s) 1613
GlaI GCGC 1 cut(s) 1613
GluI GCNGC 9 cut(s) 47, 50, 53, 422, 486, 1190, 1340, 1496, 1523
HaeIII GGCC 2 cut(s) 112, 801
HapII CCGG 2 cut(s) 370, 1402
HhaI GCGC 1 cut(s) 1614
Hin1II CATG 7 cut(s) 119, 745, 833, 950, 1189, 1222, 1640
Hin6I GCGC 1 cut(s) 1612
HinP1I GCGC 1 cut(s) 1612
HincII GTYRAC 1 cut(s) 1458
HindII GTYRAC 1 cut(s) 1458
HindIII AAGCTT 1 cut(s) 725
HinfI GANTC 5 cut(s) 13, 70, 479, 527, 1466
HpaII CCGG 2 cut(s) 370, 1402
HphI GGTGA 3 cut(s) 222, 537, 1052
Hpy166II GTNNAC 4 cut(s) 224, 536, 1371, 1458
Hpy188III TCNNGA 8 cut(s) 180, 444, 470, 1052, 1180, 1236, 1247, 1478
Hpy8I GTNNAC 4 cut(s) 224, 536, 1371, 1458
HpyCH4III ACNGT 4 cut(s) 106, 378, 665, 765
HpyCH4IV ACGT 1 cut(s) 521
HpyCH4V TGCA 8 cut(s) 4, 455, 485, 509, 1189, 1274, 1339, 1381
HpyF10VI GCNNNNNNNGC 1 cut(s) 52
HpyF3I CTNAG 7 cut(s) 630, 807, 918, 995, 1071, 1643, 1674
HpySE526I ACGT 1 cut(s) 521
Hsp92II CATG 7 cut(s) 119, 745, 833, 950, 1189, 1222, 1640
HspAI GCGC 1 cut(s) 1612
Kzo9I GATC 8 cut(s) 118, 190, 298, 491, 685, 1150, 1225, 1507
LguI GCTCTTC 2 cut(s) 359, 1545
LmnI GCTCC 2 cut(s) 1519, 1693
Lsp1109I GCAGC 6 cut(s) 36, 408, 497, 1201, 1351, 1534
LweI GCATC 3 cut(s) 470, 496, 973
MaeII ACGT 1 cut(s) 521
MaeIII GTNAC 2 cut(s) 1110, 1201
MalI GATC 8 cut(s) 120, 192, 300, 493, 687, 1152, 1227, 1509
MboI GATC 8 cut(s) 118, 190, 298, 491, 685, 1150, 1225, 1507
MflI RGATCY 4 cut(s) 491, 685, 1225, 1507
MlsI TGGCCA 1 cut(s) 112
MluCI AATT 7 cut(s) 184, 672, 885, 1163, 1353, 1531, 1680
MluNI TGGCCA 1 cut(s) 112
MlyI GAGTC 4 cut(s) 22, 79, 488, 521
MmeI TCCRAC 6 cut(s) 360, 381, 774, 1038, 1419, 1485
Mox20I TGGCCA 1 cut(s) 112
MroXI GAANNNNTTC 3 cut(s) 394, 801, 871
MscI TGGCCA 1 cut(s) 112
MseI TTAA 9 cut(s) 263, 273, 303, 707, 1166, 1352, 1581, 1593, 1602
Msp20I TGGCCA 1 cut(s) 112
MspA1I CMGCKG 1 cut(s) 49
MspI CCGG 2 cut(s) 370, 1402
MspR9I CCNGG 1 cut(s) 371
MwoI GCNNNNNNNGC 1 cut(s) 52
NciI CCSGG 1 cut(s) 371
NdeII GATC 8 cut(s) 118, 190, 298, 491, 685, 1150, 1225, 1507
NlaIII CATG 7 cut(s) 119, 745, 833, 950, 1189, 1222, 1640
NlaIV GGNNCC 2 cut(s) 640, 1509
NmuCI GTSAC 1 cut(s) 1201
NsbI TGCGCA 1 cut(s) 1613
NspI RCATGY 1 cut(s) 833
PaeR7I CTCGAG 1 cut(s) 529
PceI AGGCCT 1 cut(s) 801
PciI ACATGT 1 cut(s) 829
PciSI GCTCTTC 2 cut(s) 359, 1545
PcsI WCGNNNNNNNCGW 1 cut(s) 527
PdmI GAANNNNTTC 3 cut(s) 394, 801, 871
PfeI GAWTC 1 cut(s) 1466
PflFI GACNNNGTC 2 cut(s) 12, 104
PkrI GCNGC 9 cut(s) 48, 51, 54, 423, 487, 1191, 1341, 1497, 1524
PleI GAGTC 4 cut(s) 21, 78, 487, 521
PpsI GAGTC 4 cut(s) 21, 78, 487, 521
PscI ACATGT 1 cut(s) 829
PspN4I GGNNCC 2 cut(s) 640, 1509
PspXI VCTCGAGB 1 cut(s) 529
PstI CTGCAG 2 cut(s) 487, 1341
PsuI RGATCY 4 cut(s) 491, 685, 1225, 1507
PsyI GACNNNGTC 2 cut(s) 12, 104
RsaI GTAC 2 cut(s) 225, 1514
RsaNI GTAC 2 cut(s) 224, 1513
SapI GCTCTTC 2 cut(s) 359, 1545
SaqAI TTAA 9 cut(s) 263, 273, 303, 707, 1166, 1352, 1581, 1593, 1602
SatI GCNGC 9 cut(s) 47, 50, 53, 422, 486, 1190, 1340, 1496, 1523
Sau3AI GATC 8 cut(s) 118, 190, 298, 491, 685, 1150, 1225, 1507
SchI GAGTC 4 cut(s) 22, 79, 488, 521
ScrFI CCNGG 1 cut(s) 371
SfaNI GCATC 3 cut(s) 470, 496, 973
SfcI CTRYAG 3 cut(s) 205, 483, 1337
Sfr274I CTCGAG 1 cut(s) 529
SlaI CTCGAG 1 cut(s) 529
SmlI CTYRAG 2 cut(s) 529, 1620
SmoI CTYRAG 2 cut(s) 529, 1620
SpeI ACTAGT 2 cut(s) 1135, 1198
Sse9I AATT 7 cut(s) 184, 672, 885, 1163, 1353, 1531, 1680
SseBI AGGCCT 1 cut(s) 801
SsiI CCGC 7 cut(s) 17, 47, 53, 358, 1405, 1496, 1691
SspI AATATT 1 cut(s) 751
StuI AGGCCT 1 cut(s) 801
StyD4I CCNGG 1 cut(s) 369
StyI CCWWGG 2 cut(s) 345, 644
TaaI ACNGT 4 cut(s) 106, 378, 665, 765
TaiI ACGT 1 cut(s) 524
TaqI TCGA 3 cut(s) 530, 681, 1181
TasI AATT 7 cut(s) 184, 672, 885, 1163, 1353, 1531, 1680
TatI WGTACW 1 cut(s) 223
TauI GCSGC 3 cut(s) 49, 55, 1498
TfiI GAWTC 1 cut(s) 1466
Tru1I TTAA 9 cut(s) 263, 273, 303, 707, 1166, 1352, 1581, 1593, 1602
Tru9I TTAA 9 cut(s) 263, 273, 303, 707, 1166, 1352, 1581, 1593, 1602
TscAI CASTG 4 cut(s) 133, 462, 1263, 1388
TseFI GTSAC 1 cut(s) 1201
TseI GCWGC 6 cut(s) 49, 421, 485, 1189, 1339, 1522
Tsp45I GTSAC 1 cut(s) 1201
TspDTI ATGAA 7 cut(s) 377, 573, 714, 981, 1458, 1563, 1653
TspGWI ACGGA 3 cut(s) 25, 1500, 1673
TspRI CASTG 4 cut(s) 133, 462, 1263, 1388
Tth111I GACNNNGTC 2 cut(s) 12, 104
XapI RAATTY 2 cut(s) 184, 1531
XbaI TCTAGA 1 cut(s) 1235
XceI RCATGY 1 cut(s) 833
XhoI CTCGAG 1 cut(s) 529
XmnI GAANNNNTTC 3 cut(s) 394, 801, 871
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.