Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0005258

Physical Location & Seq

Genomic Coordinates Reverse (-)

42247818 .. 42248909

Gene Structure 1092 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0275300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 501 bp

ATGTCAGAAAACAAAGCCAGAACGATCAAGCTGTTCTGCCCATCGGTTCCGAGCACAGCCCGAGTACTGGTGGCACCGTTGGAGCAGAGGCTGGACTTGGGCTCCATAGCCCGGACGTTTGGGCTCGACCCATCGACGGTGAAGCTCAACGGCCACTTCATCAGCAGAGGAACCGACCTCGTCGCCTCCTCAGTCACATGGAAGTCCCTCCTCTCTTTCTTCTCCGCCAAGGGACTCTCCACCGGGGAAAACGACGCCAACCCGCTTGTTGTTGATGGCAAGCTCTGCAAAGTCGGCAACAAGCGTAGAGGACATGATGCTGTAAAGACTATTGGGTATTTGACTGAAGATGAAGATAGTAAGCATGGTAAAAAGACGAGGACAGGTGACCCAGGATTCTGGAGTGCCCTCAATGGAATTTGCTCCAAGAGAAAGCAATTGCCGGAAGACTTAAACTTGCTCAAGAAGCTAAAAATTAATGAAACTAACCCCGGTACATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0006810 GO:0008104 GO:0008150 GO:0010008 GO:0012505 GO:0015031 GO:0015833 GO:0016020 GO:0031090 GO:0031410 GO:0031982 GO:0033036 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0044422 GO:0044424 GO:0044433 GO:0044440 GO:0044444 GO:0044446 GO:0044464 GO:0045184 GO:0051179 GO:0051234 GO:0071702 GO:0071705 GO:0097708 GO:0098588 GO:0098805

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Protein Analysis

166

Amino Acids

18.04

Weight (kDa)

9.65

Isoelectric Point (pI)

25.91

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005258)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G25350 AT2G25350 AT2G25350 AT2G25350 AT2G25350 AT4G32160
fragaria_vesca	FvH4_2g28930 FvH4_2g28930 FvH4_2g28930 FvH4_2g28930
malus_domestica	MD08G1155500.v1.1 MD15G1126500.v1.1
prunus_persica	Prupe.1G482400_v2.0.a1 Prupe.1G482400_v2.0.a1
pyrus_communis	pycom08g12790 pycom15g11420
rosa_chinensis	RchiOBHm_Chr6g0297751
rosa_laevigata	RLG00000011565
rosa_multiflora	Rmu_sc0002674.1_g000008
rosa_roxburghii	Rroxscaffold_7G00170230 Rroxscaffold_7G00179080
rosa_rugosa	Rorug06G0275200 Rorug06G0275200 Rorug06G0275300
rosa_samantha	Rh6AG385700 Rh6BG394200 Rh6CG400000 Rh6DG386500
rosa_wichuraiana	Rw6G033620

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	73
AciI	CCGC	2 cut(s)	225, 263
AcoI	YGGCCR	1 cut(s)	151
AcsI	RAATTY	1 cut(s)	417
AcuI	CTGAAG	1 cut(s)	366
AcyI	GRCGYC	1 cut(s)	255
AfaI	GTAC	2 cut(s)	66, 496
AfiI	CCNNNNNNNGG	3 cut(s)	67, 111, 136
AjnI	CCWGG	1 cut(s)	391
AluBI	AGCT	4 cut(s)	31, 145, 283, 469
AluI	AGCT	4 cut(s)	31, 145, 283, 469
Alw21I	GWGCWC	1 cut(s)	56
AlwNI	CAGNNNCTG	1 cut(s)	91
Ama87I	CYCGRG	1 cut(s)	60
AoxI	GGCC	1 cut(s)	151
ApoI	RAATTY	1 cut(s)	417
AseI	ATTAAT	1 cut(s)	477
AsuC2I	CCSGG	3 cut(s)	112, 244, 492
AsuHPI	GGTGA	2 cut(s)	151, 398
AvaI	CYCGRG	1 cut(s)	60
BaeGI	GKGCMC	1 cut(s)	409
BanI	GGYRCC	1 cut(s)	73
BanII	GRGCYC	2 cut(s)	104, 126
BbsI	GAAGAC	1 cut(s)	453
Bbv12I	GWGCWC	1 cut(s)	56
BccI	CCATC	3 cut(s)	49, 139, 269
BceAI	ACGGC	1 cut(s)	166
BciT130I	CCWGG	1 cut(s)	393
BcnI	CCSGG	3 cut(s)	112, 244, 492
BmcAI	AGTACT	1 cut(s)	66
Bme1390I	CCNGG	4 cut(s)	112, 244, 393, 492
BmeT110I	CYCGRG	1 cut(s)	60
BmiI	GGNNCC	4 cut(s)	48, 75, 103, 172
BmrFI	CCNGG	4 cut(s)	112, 244, 393, 492
BmsI	GCATC	1 cut(s)	307
BpiI	GAAGAC	1 cut(s)	453
BpmI	CTGGAG	1 cut(s)	421
BpuEI	CTTGAG	1 cut(s)	446
BpuMI	CCSGG	3 cut(s)	112, 244, 492
BsaHI	GRCGYC	1 cut(s)	255
BsaJI	CCNNGG	4 cut(s)	228, 243, 391, 490
BsaXI	ACNNNNNCTCC	2 cut(s)	86, 116
Bsc4I	CCNNNNNNNGG	3 cut(s)	67, 111, 136
Bse1I	ACTGG	1 cut(s)	72
BseBI	CCWGG	1 cut(s)	393
BseDI	CCNNGG	4 cut(s)	228, 243, 391, 490
BseLI	CCNNNNNNNGG	3 cut(s)	67, 111, 136
BseMII	CTCAG	1 cut(s)	204
BseNI	ACTGG	1 cut(s)	72
BseRI	GAGGAG	2 cut(s)	178, 200
BseSI	GKGCMC	1 cut(s)	409
BshFI	GGCC	1 cut(s)	153
BshNI	GGYRCC	1 cut(s)	73
BsiHKAI	GWGCWC	1 cut(s)	56
BsiHKCI	CYCGRG	1 cut(s)	60
BsiSI	CCGG	4 cut(s)	112, 243, 443, 492
BslFI	GGGAC	2 cut(s)	190, 246
BslI	CCNNNNNNNGG	3 cut(s)	67, 111, 136
BsmFI	GGGAC	2 cut(s)	190, 246
BsnI	GGCC	1 cut(s)	153
BsoBI	CYCGRG	1 cut(s)	60
Bsp1286I	GDGCHC	4 cut(s)	56, 104, 126, 409
Bsp143I	GATC	1 cut(s)	24
BspACI	CCGC	2 cut(s)	225, 263
BspANI	GGCC	1 cut(s)	153
BspCNI	CTCAG	1 cut(s)	203
BspLI	GGNNCC	4 cut(s)	48, 75, 103, 172
BspT107I	GGYRCC	1 cut(s)	73
BsrI	ACTGG	1 cut(s)	72
BssECI	CCNNGG	4 cut(s)	228, 243, 391, 490
BssMI	GATC	1 cut(s)	24
BssNI	GRCGYC	1 cut(s)	255
BssT1I	CCWWGG	1 cut(s)	228
Bst2UI	CCWGG	1 cut(s)	393
Bst4CI	ACNGT	2 cut(s)	78, 139
BstACI	GRCGYC	1 cut(s)	255
BstAPI	GCANNNNNTGC	1 cut(s)	285
BstC8I	GCNNGC	1 cut(s)	281
BstDEI	CTNAG	1 cut(s)	190
BstEII	GGTNACC	1 cut(s)	386
BstKTI	GATC	1 cut(s)	27
BstMBI	GATC	1 cut(s)	24
BstMWI	GCNNNNNNNGC	3 cut(s)	285, 294, 466
BstNI	CCWGG	1 cut(s)	393
BstPI	GGTNACC	1 cut(s)	386
BstSCI	CCNGG	4 cut(s)	110, 242, 391, 490
BstSLI	GKGCMC	1 cut(s)	409
BstV2I	GAAGAC	1 cut(s)	453
BstXI	CCANNNNNNTGG	1 cut(s)	399
BsuRI	GGCC	1 cut(s)	153
Cac8I	GCNNGC	1 cut(s)	281
CaiI	CAGNNNCTG	1 cut(s)	91
CseI	GACGC	1 cut(s)	263
Csp6I	GTAC	2 cut(s)	65, 495
CviAII	CATG	4 cut(s)	198, 314, 365, 498
CviQI	GTAC	2 cut(s)	65, 495
DdeI	CTNAG	1 cut(s)	190
DpnI	GATC	1 cut(s)	26
DpnII	GATC	1 cut(s)	24
EaeI	YGGCCR	1 cut(s)	151
EciI	GGCGGA	1 cut(s)	214
Eco130I	CCWWGG	1 cut(s)	228
Eco24I	GRGCYC	2 cut(s)	104, 126
Eco57I	CTGAAG	1 cut(s)	366
Eco88I	CYCGRG	1 cut(s)	60
Eco91I	GGTNACC	1 cut(s)	386
EcoO65I	GGTNACC	1 cut(s)	386
EcoRII	CCWGG	1 cut(s)	391
EcoT14I	CCWWGG	1 cut(s)	228
EcoT38I	GRGCYC	2 cut(s)	104, 126
ErhI	CCWWGG	1 cut(s)	228
FaeI	CATG	4 cut(s)	201, 317, 368, 501
FaiI	YATR	5 cut(s)	107, 199, 315, 366, 499
FaqI	GGGAC	2 cut(s)	190, 246
FatI	CATG	4 cut(s)	197, 313, 364, 497
FauI	CCCGC	1 cut(s)	270
FriOI	GRGCYC	2 cut(s)	104, 126
GsuI	CTGGAG	1 cut(s)	421
HaeIII	GGCC	1 cut(s)	153
HapII	CCGG	4 cut(s)	112, 243, 443, 492
HgaI	GACGC	1 cut(s)	263
Hin1I	GRCGYC	1 cut(s)	255
Hin1II	CATG	4 cut(s)	201, 317, 368, 501
HinfI	GANTC	2 cut(s)	234, 396
HpaII	CCGG	4 cut(s)	112, 243, 443, 492
HphI	GGTGA	2 cut(s)	151, 398
Hpy188I	TCNGA	2 cut(s)	7, 51
Hpy188III	TCNNGA	2 cut(s)	400, 463
Hpy99I	CGWCG	3 cut(s)	139, 185, 257
HpyCH4III	ACNGT	2 cut(s)	78, 139
HpyCH4IV	ACGT	1 cut(s)	116
HpyCH4V	TGCA	1 cut(s)	288
HpyF10VI	GCNNNNNNNGC	3 cut(s)	285, 294, 466
HpyF3I	CTNAG	1 cut(s)	190
HpySE526I	ACGT	1 cut(s)	116
Hsp92I	GRCGYC	1 cut(s)	255
Hsp92II	CATG	4 cut(s)	201, 317, 368, 501
Kzo9I	GATC	1 cut(s)	24
LmnI	GCTCC	3 cut(s)	82, 107, 428
LweI	GCATC	1 cut(s)	307
MaeII	ACGT	1 cut(s)	116
MaeIII	GTNAC	2 cut(s)	193, 386
MalI	GATC	1 cut(s)	26
MboI	GATC	1 cut(s)	24
MboII	GAAGA	4 cut(s)	211, 359, 365, 458
MfeI	CAATTG	1 cut(s)	437
MhlI	GDGCHC	4 cut(s)	56, 104, 126, 409
MluCI	AATT	3 cut(s)	417, 437, 474
MlyI	GAGTC	1 cut(s)	228
MmeI	TCCRAC	1 cut(s)	60
MseI	TTAA	2 cut(s)	452, 477
MspI	CCGG	4 cut(s)	112, 243, 443, 492
MspR9I	CCNGG	4 cut(s)	112, 244, 393, 492
MunI	CAATTG	1 cut(s)	437
MvaI	CCWGG	1 cut(s)	393
MwoI	GCNNNNNNNGC	3 cut(s)	285, 294, 466
NciI	CCSGG	3 cut(s)	112, 244, 492
NdeII	GATC	1 cut(s)	24
NlaIII	CATG	4 cut(s)	201, 317, 368, 501
NlaIV	GGNNCC	4 cut(s)	48, 75, 103, 172
NmuCI	GTSAC	2 cut(s)	193, 386
PfeI	GAWTC	1 cut(s)	396
PflFI	GACNNNGTC	1 cut(s)	179
PleI	GAGTC	1 cut(s)	228
PpsI	GAGTC	1 cut(s)	228
PshBI	ATTAAT	1 cut(s)	477
Psp6I	CCWGG	1 cut(s)	391
PspEI	GGTNACC	1 cut(s)	386
PspGI	CCWGG	1 cut(s)	391
PspN4I	GGNNCC	4 cut(s)	48, 75, 103, 172
PstNI	CAGNNNCTG	1 cut(s)	91
PsyI	GACNNNGTC	1 cut(s)	179
RsaI	GTAC	2 cut(s)	66, 496
RsaNI	GTAC	2 cut(s)	65, 495
SaqAI	TTAA	2 cut(s)	452, 477
Sau3AI	GATC	1 cut(s)	24
ScaI	AGTACT	1 cut(s)	66
SchI	GAGTC	1 cut(s)	228
ScrFI	CCNGG	4 cut(s)	112, 244, 393, 492
SduI	GDGCHC	4 cut(s)	56, 104, 126, 409
SetI	ASST	7 cut(s)	33, 119, 147, 180, 285, 388, 471
SfaNI	GCATC	1 cut(s)	307
SmlI	CTYRAG	1 cut(s)	461
SmoI	CTYRAG	1 cut(s)	461
Sse9I	AATT	3 cut(s)	417, 437, 474
SsiI	CCGC	2 cut(s)	225, 263
StyD4I	CCNGG	4 cut(s)	110, 242, 391, 490
StyI	CCWWGG	1 cut(s)	228
TaaI	ACNGT	2 cut(s)	78, 139
TaiI	ACGT	1 cut(s)	119
TaqI	TCGA	2 cut(s)	126, 134
TasI	AATT	3 cut(s)	417, 437, 474
TatI	WGTACW	1 cut(s)	64
TfiI	GAWTC	1 cut(s)	396
Tru1I	TTAA	2 cut(s)	452, 477
Tru9I	TTAA	2 cut(s)	452, 477
TseFI	GTSAC	2 cut(s)	193, 386
Tsp45I	GTSAC	2 cut(s)	193, 386
TspDTI	ATGAA	3 cut(s)	148, 366, 495
Tth111I	GACNNNGTC	1 cut(s)	179
VspI	ATTAAT	1 cut(s)	477
XapI	RAATTY	1 cut(s)	417
ZrmI	AGTACT	1 cut(s)	66

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.