Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6B

Orthogroup ID

OG0005258

Physical Location & Seq

Genomic Coordinates Forward (+)

62296691 .. 62302807

Gene Structure 6117 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6BG394200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1773 bp

ATGAAGAGTCAAGAATTGTTGGAAGAGAGAAGGTGCTCTTTGGAGGCCTGGATGATAAAGCTGCTATCTGATATAGATATATCAAGAAGCGTTGCAGTGGCATCCTTTCTTGAATTAGAATCTGCAGCTAGGTCCTCATTCCAAGACACAAGTCAACACAGTTCAGAAGCGAATTCACTTCAGTCGCCTTCCCATCCTACCTTACCTGCCATTCTTGGTAGCTCGTCCATTACATCAGATTATGGAAGTGATACTGCTTATGAGACATCTGACCTGGGAACACCAAGGCTAGGAAGGGATGATAGTTCAGAACTGGGTATCGAAGATCTGGCATTGGATGAAGATCTAACAAGTCCAATAGAAAAGCTTGTGAAGTTTGGCATGACCAATATTGATGAGGGACTGTTTATGGGGCAGACTATACTAGAGCAACTGGAAGGCCTTCCTAAACATAAAATGCATGGGAGACATGTCAATAATGTTACAGGGAAGGACCTGTATAATGGAAGTGCTTCTAAACCTTCAATACTAGCTCGTAATGGAATGGAACTTTTCTCTCAGCCAGAGCATAGTAAAGTTTTTAGTCATGCTCGCAAGCTCTCAGATGAAAGTGTGGGAAGTGATGTAAGTTCTCTAAGAGGTAGTGATATGTCTAACTCTGGGGTTCCAAATTCAATTGGTGATGGCACCCTCGACCTTCTTGGAGGTGCTGATGTTTCAAGGATCATGGAAATGCTCGGAAGTACAGAATTACAAACTTCAGGCAGCACTCAAGTAGTTCTTCCATTGGATCAGCGTCCTAAACTGAATAGGGTTATGTTGACCATGCAGCAAAGACTAGTCACAGCTAAAACAGACATGGAGGATCTTATAGCGAGATTAAATCAAGAAATAGCAGTCAAAGATTACCTCTCAACAAAGGTCAAGGATTTGGAAGTGGAACTTGAAACTACTAGACAGAAGAGTAAGGAAAACCTTCAGCAAGCTATTTTGGTTGAAAGGGAAAGGTTTACCAAAATGCAGTGGGATATGGAGGAACTTCGTCGGAAGTCATTGGAAATGGAGTTGAAGATGAAGTCTGAACAGGATAACACGTCATGCCCAGAGGCAAAAAATGATTCCACTATTCAAGAGAAGGACATATCTCCACCAGAGTTAGATTCTTCTAAGGAGCAGCTTGAGAATTTGTCAAAGCGATATGAAGAGCTAGAAGCAAAATCAAAAGCAGATATTAAAGTTCTCGTTAAAGAAGTTAAATCCTTGCGTAGTTGCCAAGCAGAACTCAGGCATGAGCTTAGTAAATCTCTGAAGGAGAAATCTGAATCTGAGAAGCTTCTCCAACGGGAACAACAGAGGAGCAAACATGCAGAAACTGCTAGAGAGAAATTGTTGCAGGAATGCAAGATTCTTCACAAACAGCTTCAGGAGTGCAATACCAATTTTCCTTCTGAAGGTGAAGATAACTTCATTTTGGGTTCATCGATACAAGAGGCTTCAGATTTGTTGACAACATCAGACAACCGAATTAACCAACTACTTTCAGAGGCACAACTCTTGGAACAAGACAACAGAGATGATGTTTCTGACGTTGGTGAAGCTGACGATGTTACAGATGATACAAGGACAACAGACGATGAGTTGAGGAAGATGCTCGTAGACATTTTTACTGAGAATGCGAGCTTGCGGAAACAGGTGAACTCTGTTATACGACACGCTCTCAAAGTGGACATCCAGTGTAAGAAAGACGATGTCCCCAACGACAAACTTCACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0006810 GO:0008104 GO:0008150 GO:0010008 GO:0012505 GO:0015031 GO:0015833 GO:0016020 GO:0031090 GO:0031410 GO:0031982 GO:0033036 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0044422 GO:0044424 GO:0044433 GO:0044440 GO:0044444 GO:0044446 GO:0044464 GO:0045184 GO:0051179 GO:0051234 GO:0071702 GO:0071705 GO:0097708 GO:0098588 GO:0098805

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Protein Analysis

590

Amino Acids

66.2

Weight (kDa)

4.92

Isoelectric Point (pI)

50.91

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005258)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G25350 AT2G25350 AT2G25350 AT2G25350 AT2G25350 AT4G32160
fragaria_vesca	FvH4_2g28930 FvH4_2g28930 FvH4_2g28930 FvH4_2g28930
malus_domestica	MD08G1155500.v1.1 MD15G1126500.v1.1
prunus_persica	Prupe.1G482400_v2.0.a1 Prupe.1G482400_v2.0.a1
pyrus_communis	pycom08g12790 pycom15g11420
rosa_chinensis	RchiOBHm_Chr6g0297751
rosa_laevigata	RLG00000011565
rosa_multiflora	Rmu_sc0002674.1_g000008
rosa_roxburghii	Rroxscaffold_7G00170230 Rroxscaffold_7G00179080
rosa_rugosa	Rorug06G0275200 Rorug06G0275200 Rorug06G0275300
rosa_samantha	Rh6AG385700 Rh6BG394200 Rh6CG400000 Rh6DG386500
rosa_wichuraiana	Rw6G033620

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	214
AccB1I	GGYRCC	1 cut(s)	686
AccI	GTMKAC	1 cut(s)	1656
AciI	CCGC	1 cut(s)	1684
AclWI	GGATC	3 cut(s)	731, 798, 873
AcsI	RAATTY	3 cut(s)	172, 670, 1183
AcuI	CTGAAG	7 cut(s)	164, 744, 962, 1328, 1406, 1470, 1479
AfaI	GTAC	1 cut(s)	745
AfiI	CCNNNNNNNGG	2 cut(s)	290, 1451
AflIII	ACRYGT	2 cut(s)	469, 1092
AgsI	TTSAA	8 cut(s)	113, 525, 675, 720, 947, 998, 1069, 1130
AhlI	ACTAGT	1 cut(s)	838
AjiI	CACGTC	1 cut(s)	1095
AjnI	CCWGG	2 cut(s)	47, 273
Alw21I	GWGCWC	1 cut(s)	38
Alw26I	GTCTC	2 cut(s)	257, 460
AlwI	GGATC	3 cut(s)	731, 798, 873
AlwNI	CAGNNNCTG	1 cut(s)	1373
AoxI	GGCC	2 cut(s)	45, 439
ApeKI	GCWGC	5 cut(s)	61, 125, 765, 829, 1174
ApoI	RAATTY	3 cut(s)	172, 670, 1183
Asp700I	GAANNNNTTC	3 cut(s)	441, 511, 975
AspS9I	GGNCC	2 cut(s)	132, 493
AsuHPI	GGTGA	4 cut(s)	692, 1466, 1604, 1705
AvaII	GGWCC	2 cut(s)	132, 493
BanI	GGYRCC	1 cut(s)	686
Bbv12I	GWGCWC	1 cut(s)	38
BbvI	GCAGC	5 cut(s)	48, 137, 777, 841, 1186
BccI	CCATC	2 cut(s)	201, 677
BciT130I	CCWGG	2 cut(s)	49, 275
BcoDI	GTCTC	2 cut(s)	257, 460
BcuI	ACTAGT	1 cut(s)	838
BfaI	CTAG	9 cut(s)	129, 290, 425, 530, 839, 954, 1208, 1377, 1771
BfmI	CTRYAG	1 cut(s)	123
BfuAI	ACCTGC	1 cut(s)	214
BglII	AGATCT	2 cut(s)	325, 343
BisI	GCNGC	5 cut(s)	62, 126, 766, 830, 1175
BlsI	GCNGC	5 cut(s)	63, 127, 767, 831, 1176
Bme1390I	CCNGG	2 cut(s)	49, 275
Bme18I	GGWCC	2 cut(s)	132, 493
BmgBI	CACGTC	1 cut(s)	1095
BmgT120I	GGNCC	2 cut(s)	132, 493
BmiI	GGNNCC	2 cut(s)	666, 688
BmrFI	CCNGG	2 cut(s)	49, 275
BmrI	ACTGGG	1 cut(s)	323
BmsI	GCATC	2 cut(s)	110, 1638
BmuI	ACTGGG	1 cut(s)	323
BoxI	GACNNNNGTC	1 cut(s)	150
BpuEI	CTTGAG	2 cut(s)	756, 1199
Bsa29I	ATCGAT	1 cut(s)	1481
BsaBI	GATNNNNATC	1 cut(s)	342
BsaJI	CCNNGG	2 cut(s)	274, 284
Bsc4I	CCNNNNNNNGG	2 cut(s)	290, 1451
Bse1I	ACTGG	3 cut(s)	318, 438, 1732
Bse8I	GATNNNNATC	1 cut(s)	342
BseBI	CCWGG	2 cut(s)	49, 275
BseCI	ATCGAT	1 cut(s)	1481
BseDI	CCNNGG	2 cut(s)	274, 284
BseGI	GGATG	6 cut(s)	57, 101, 193, 304, 343, 1728
BseJI	GATNNNNATC	1 cut(s)	342
BseLI	CCNNNNNNNGG	2 cut(s)	290, 1451
BseMII	CTCAG	5 cut(s)	572, 615, 1297, 1317, 1659
BseNI	ACTGG	3 cut(s)	318, 438, 1732
BseRI	GAGGAG	1 cut(s)	1369
BseXI	GCAGC	5 cut(s)	48, 137, 777, 841, 1186
BshFI	GGCC	2 cut(s)	47, 441
BshNI	GGYRCC	1 cut(s)	686
BshVI	ATCGAT	1 cut(s)	1481
BsiHKAI	GWGCWC	1 cut(s)	38
BslFI	GGGAC	2 cut(s)	414, 1736
BslI	CCNNNNNNNGG	2 cut(s)	290, 1451
BsmAI	GTCTC	2 cut(s)	257, 460
BsmFI	GGGAC	2 cut(s)	414, 1736
BsmI	GAATGC	2 cut(s)	1403, 1678
BsnI	GGCC	2 cut(s)	47, 441
Bsp1286I	GDGCHC	1 cut(s)	38
Bsp143I	GATC	5 cut(s)	325, 343, 723, 790, 865
BspACI	CCGC	1 cut(s)	1684
BspANI	GGCC	2 cut(s)	47, 441
BspCNI	CTCAG	5 cut(s)	571, 614, 1296, 1318, 1660
BspDI	ATCGAT	1 cut(s)	1481
BspLI	GGNNCC	2 cut(s)	666, 688
BspMAI	CTGCAG	1 cut(s)	127
BspMI	ACCTGC	1 cut(s)	214
BspPI	GGATC	3 cut(s)	731, 798, 873
BspQI	GCTCTTC	1 cut(s)	1197
BspT107I	GGYRCC	1 cut(s)	686
BsrI	ACTGG	3 cut(s)	318, 438, 1732
BssECI	CCNNGG	2 cut(s)	274, 284
BssMI	GATC	5 cut(s)	325, 343, 723, 790, 865
BssT1I	CCWWGG	1 cut(s)	284
Bst2UI	CCWGG	2 cut(s)	49, 275
Bst4CI	ACNGT	2 cut(s)	161, 405
Bst6I	CTCTTC	3 cut(s)	18, 956, 1197
BstAPI	GCANNNNNTGC	1 cut(s)	1373
BstC8I	GCNNGC	5 cut(s)	592, 596, 984, 1678, 1682
BstDEI	CTNAG	8 cut(s)	558, 601, 635, 1167, 1283, 1295, 1326, 1668
BstENI	CCTNNNNNAGG	1 cut(s)	1449
BstF5I	GGATG	6 cut(s)	57, 101, 193, 304, 343, 1728
BstKTI	GATC	5 cut(s)	328, 346, 726, 793, 868
BstMAI	GTCTC	2 cut(s)	257, 460
BstMBI	GATC	5 cut(s)	325, 343, 723, 790, 865
BstMWI	GCNNNNNNNGC	1 cut(s)	1373
BstNI	CCWGG	2 cut(s)	49, 275
BstNSI	RCATGY	2 cut(s)	473, 1367
BstPAI	GACNNNNGTC	1 cut(s)	150
BstSCI	CCNGG	2 cut(s)	47, 273
BstSFI	CTRYAG	1 cut(s)	123
BstV1I	GCAGC	5 cut(s)	48, 137, 777, 841, 1186
BstX2I	RGATCY	3 cut(s)	325, 343, 865
BstYI	RGATCY	3 cut(s)	325, 343, 865
Bsu15I	ATCGAT	1 cut(s)	1481
BsuRI	GGCC	2 cut(s)	47, 441
BsuTUI	ATCGAT	1 cut(s)	1481
BtrI	CACGTC	1 cut(s)	1095
BtsCI	GGATG	6 cut(s)	57, 101, 193, 304, 343, 1728
BtsI	GCAGTG	2 cut(s)	102, 1028
BtsIMutI	CAGTG	3 cut(s)	102, 1028, 1739
BveI	ACCTGC	1 cut(s)	214
Cac8I	GCNNGC	5 cut(s)	592, 596, 984, 1678, 1682
CaiI	CAGNNNCTG	1 cut(s)	1373
Cfr13I	GGNCC	2 cut(s)	132, 493
ClaI	ATCGAT	1 cut(s)	1481
CseI	GACGC	1 cut(s)	785
Csp6I	GTAC	1 cut(s)	744
CviQI	GTAC	1 cut(s)	744
DdeI	CTNAG	8 cut(s)	558, 601, 635, 1167, 1283, 1295, 1326, 1668
DpnI	GATC	5 cut(s)	327, 345, 725, 792, 867
DpnII	GATC	5 cut(s)	325, 343, 723, 790, 865
Eam1104I	CTCTTC	3 cut(s)	18, 956, 1197
EarI	CTCTTC	3 cut(s)	18, 956, 1197
Eco130I	CCWWGG	1 cut(s)	284
Eco147I	AGGCCT	2 cut(s)	47, 441
Eco47I	GGWCC	2 cut(s)	132, 493
Eco57I	CTGAAG	7 cut(s)	164, 744, 962, 1328, 1406, 1470, 1479
EcoNI	CCTNNNNNAGG	1 cut(s)	1449
EcoO109I	RGGNCCY	2 cut(s)	132, 493
EcoRI	GAATTC	1 cut(s)	172
EcoRII	CCWGG	2 cut(s)	47, 273
EcoT14I	CCWWGG	1 cut(s)	284
EcoT22I	ATGCAT	1 cut(s)	462
ErhI	CCWWGG	1 cut(s)	284
FalI	AAGNNNNNCTT	6 cut(s)	22, 54, 765, 797, 927, 959
FaqI	GGGAC	2 cut(s)	414, 1736
FblI	GTMKAC	1 cut(s)	1656
Fnu4HI	GCNGC	5 cut(s)	62, 126, 766, 830, 1175
FokI	GGATG	6 cut(s)	64, 88, 180, 311, 350, 1715
Fsp4HI	GCNGC	5 cut(s)	62, 126, 766, 830, 1175
FspBI	CTAG	9 cut(s)	129, 290, 425, 530, 839, 954, 1208, 1377, 1771
GluI	GCNGC	5 cut(s)	62, 126, 766, 830, 1175
HaeIII	GGCC	2 cut(s)	47, 441
HgaI	GACGC	1 cut(s)	785
HincII	GTYRAC	3 cut(s)	155, 822, 1506
HindII	GTYRAC	3 cut(s)	155, 822, 1506
HindIII	AAGCTT	2 cut(s)	365, 1331
HinfI	GANTC	6 cut(s)	7, 119, 1118, 1160, 1322, 1405
HphI	GGTGA	4 cut(s)	692, 1466, 1604, 1705
Hpy166II	GTNNAC	7 cut(s)	155, 822, 1011, 1506, 1657, 1696, 1726
Hpy188III	TCNNGA	6 cut(s)	11, 84, 110, 887, 1130, 1424
Hpy8I	GTNNAC	7 cut(s)	155, 822, 1011, 1506, 1657, 1696, 1726
Hpy99I	CGWCG	1 cut(s)	1047
HpyCH4III	ACNGT	2 cut(s)	161, 405
HpyCH4IV	ACGT	2 cut(s)	1094, 1587
HpyCH4V	TGCA	9 cut(s)	95, 125, 460, 829, 1021, 1367, 1393, 1401, 1431
HpyF10VI	GCNNNNNNNGC	1 cut(s)	1373
HpyF3I	CTNAG	8 cut(s)	558, 601, 635, 1167, 1283, 1295, 1326, 1668
HpySE526I	ACGT	2 cut(s)	1094, 1587
Kzo9I	GATC	5 cut(s)	325, 343, 723, 790, 865
LguI	GCTCTTC	1 cut(s)	1197
LmnI	GCTCC	2 cut(s)	1171, 1356
Lsp1109I	GCAGC	5 cut(s)	48, 137, 777, 841, 1186
LweI	GCATC	2 cut(s)	110, 1638
MaeI	CTAG	9 cut(s)	129, 290, 425, 530, 839, 954, 1208, 1377, 1771
MaeII	ACGT	2 cut(s)	1094, 1587
MaeIII	GTNAC	3 cut(s)	481, 841, 1606
MalI	GATC	5 cut(s)	327, 345, 725, 792, 867
MboI	GATC	5 cut(s)	325, 343, 723, 790, 865
MfeI	CAATTG	1 cut(s)	675
MflI	RGATCY	3 cut(s)	325, 343, 865
MhlI	GDGCHC	1 cut(s)	38
MlyI	GAGTC	1 cut(s)	16
MmeI	TCCRAC	2 cut(s)	1025, 1363
Mph1103I	ATGCAT	1 cut(s)	462
MroXI	GAANNNNTTC	3 cut(s)	441, 511, 975
MseI	TTAA	5 cut(s)	881, 1233, 1245, 1254, 1527
MslI	CAYNNNNRTG	1 cut(s)	731
MspR9I	CCNGG	2 cut(s)	49, 275
MunI	CAATTG	1 cut(s)	675
Mva1269I	GAATGC	2 cut(s)	1403, 1678
MvaI	CCWGG	2 cut(s)	49, 275
MwoI	GCNNNNNNNGC	1 cut(s)	1373
NdeII	GATC	5 cut(s)	325, 343, 723, 790, 865
NlaIV	GGNNCC	2 cut(s)	666, 688
NmuCI	GTSAC	1 cut(s)	841
NsiI	ATGCAT	1 cut(s)	462
NspI	RCATGY	2 cut(s)	473, 1367
PceI	AGGCCT	2 cut(s)	47, 441
PciI	ACATGT	1 cut(s)	469
PciSI	GCTCTTC	1 cut(s)	1197
PctI	GAATGC	2 cut(s)	1403, 1678
PdmI	GAANNNNTTC	3 cut(s)	441, 511, 975
PfeI	GAWTC	5 cut(s)	119, 1118, 1160, 1322, 1405
PflFI	GACNNNGTC	1 cut(s)	1748
PkrI	GCNGC	5 cut(s)	63, 127, 767, 831, 1176
PleI	GAGTC	1 cut(s)	15
PpsI	GAGTC	1 cut(s)	15
PpuMI	RGGWCCY	2 cut(s)	132, 493
PscI	ACATGT	1 cut(s)	469
PshAI	GACNNNNGTC	1 cut(s)	150
Psp5II	RGGWCCY	2 cut(s)	132, 493
Psp6I	CCWGG	2 cut(s)	47, 273
PspGI	CCWGG	2 cut(s)	47, 273
PspN4I	GGNNCC	2 cut(s)	666, 688
PspPI	GGNCC	2 cut(s)	132, 493
PspPPI	RGGWCCY	2 cut(s)	132, 493
PstI	CTGCAG	1 cut(s)	127
PstNI	CAGNNNCTG	1 cut(s)	1373
PsuI	RGATCY	3 cut(s)	325, 343, 865
PsyI	GACNNNGTC	1 cut(s)	1748
RsaI	GTAC	1 cut(s)	745
RsaNI	GTAC	1 cut(s)	744
RseI	CAYNNNNRTG	1 cut(s)	731
SapI	GCTCTTC	1 cut(s)	1197
SaqAI	TTAA	5 cut(s)	881, 1233, 1245, 1254, 1527
SatI	GCNGC	5 cut(s)	62, 126, 766, 830, 1175
Sau3AI	GATC	5 cut(s)	325, 343, 723, 790, 865
Sau96I	GGNCC	2 cut(s)	132, 493
SchI	GAGTC	1 cut(s)	16
ScrFI	CCNGG	2 cut(s)	49, 275
SduI	GDGCHC	1 cut(s)	38
SfaNI	GCATC	2 cut(s)	110, 1638
SfcI	CTRYAG	1 cut(s)	123
SinI	GGWCC	2 cut(s)	132, 493
SmiMI	CAYNNNNRTG	1 cut(s)	731
SmlI	CTYRAG	2 cut(s)	771, 1178
SmoI	CTYRAG	2 cut(s)	771, 1178
SpeI	ACTAGT	1 cut(s)	838
SseBI	AGGCCT	2 cut(s)	47, 441
SsiI	CCGC	1 cut(s)	1684
SspI	AATATT	1 cut(s)	391
SspMI	CTAG	9 cut(s)	129, 290, 425, 530, 839, 954, 1208, 1377, 1771
StuI	AGGCCT	2 cut(s)	47, 441
StyD4I	CCNGG	2 cut(s)	47, 273
StyI	CCWWGG	1 cut(s)	284
TaaI	ACNGT	2 cut(s)	161, 405
TaiI	ACGT	2 cut(s)	1097, 1590
TaqI	TCGA	3 cut(s)	321, 693, 1481
TatI	WGTACW	1 cut(s)	743
TfiI	GAWTC	5 cut(s)	119, 1118, 1160, 1322, 1405
Tru1I	TTAA	5 cut(s)	881, 1233, 1245, 1254, 1527
Tru9I	TTAA	5 cut(s)	881, 1233, 1245, 1254, 1527
TscAI	CASTG	3 cut(s)	102, 1028, 1739
TseFI	GTSAC	1 cut(s)	841
TseI	GCWGC	5 cut(s)	61, 125, 765, 829, 1174
Tsp45I	GTSAC	1 cut(s)	841
TspDTI	ATGAA	7 cut(s)	17, 354, 621, 1088, 1215, 1456, 1467
TspRI	CASTG	3 cut(s)	102, 1028, 1739
Tth111I	GACNNNGTC	1 cut(s)	1748
VpaK11BI	GGWCC	2 cut(s)	132, 493
XagI	CCTNNNNNAGG	1 cut(s)	1449
XapI	RAATTY	3 cut(s)	172, 670, 1183
XceI	RCATGY	2 cut(s)	473, 1367
XmiI	GTMKAC	1 cut(s)	1656
XmnI	GAANNNNTTC	3 cut(s)	441, 511, 975
XspI	CTAG	9 cut(s)	129, 290, 425, 530, 839, 954, 1208, 1377, 1771
Zsp2I	ATGCAT	1 cut(s)	462

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.