Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6D

Orthogroup ID

OG0005258

Physical Location & Seq

Genomic Coordinates Forward (+)

57970878 .. 57976909

Gene Structure 6032 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6DG386500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1533 bp

ATGACTCTCCAGTCTTTATGCATGCTCAGGTTCTACAGGGTTCAGGTGGGACTGCAATCACCAGAAGGTATTACAACTACAAGTGGAGTGCTAAGAAGATTTAATGATTTTCTGAAGTTATTTAATGACCTTAAAAAGGCATTTCCCAAGAAAAATCTCCCACCAACTCCACCCAAGGGACTTCTGCGGATGAAGAGTCAAGAATTGTTGGAAGAGAGAAGGTGCTCTTTGGAGGCCTGGATGATAAAGCTGCTATCTGATACAGATATATCAAGAAGCGTTGCAGTGGCATCCTTTCTTGAATTAGAATCTGCAGCTAGGTCCTCATTCCAAGACACAAGTCAACACAGTTCAGAAGCGAATTCACTTCAGTCGCCTTCCCATCCTACCTTACCTGCCATTCTTGGTAGCTCGTCCATTACATCAGATTATGGAAGTGATACTGCTTATGAGACATCTGACCTGGGAACACCAAGGCTAGGAAGGGATGATAGTTCAGAACTGGGTATCGAAGATCTGGCATTGGATGAAGATCTAACAAGTCCAATAGAAAAGCTTGTGAAGTTTGGCATGACCAATATTGATGAGGGACTGTTTATGGGGCAGACTATACTAGAGCAACTGGAAGGCCTTCCTAAACATAAAATGCATGGGAGACATGTCAATAATGTTACAGGGAAGGACCTGTATAATGGAAGTGCTTCTAAACCTTCAATACTAGCTCGTAATGGAATGGAACTTTTCTCTCAGCCAGAGCATAGTAAAGTTTTTAGTCATGCTCGCAAGCTCTCAGATGAAAGTGTGGGAAGTGATGTAAGTTCTCTAAGAGGTAGTGATATGTCTAACTCTGGGGTTCCAAATTCAATTGGTGATGGCACCCTCGACCTTCTTGGAGGTGCTGATGTTTCAAGGATCATGGAAATGCTCGGAAGTACAGAATTACAAACTTCAGGCAGCACTCAAGTAGTTCTTCCATTGGATCAGCGTCCTAAACTGAATAGGGTTATGTTGACCATGCAGCAAAGACTAGTCACAGCTAAAACAGACATGGAAGATCTTATAGCGAGATTAAATCAAGAAATAGCAGTCAAAGATTACCTCTCAACAAAGGTCAAGGATTTGGAAGTGGAACTTGAAACTACTAGACAGAAGAGTAAGGAAAACCTTCAGCAAGCTATTTTGGTTGAAAGGGAAAGGTTTACCAAAATGCAGTGGGATATGGAGGAACTTCGTCGGAAGTCATTGGAAATGGAGTTGAAGATGAAGTCTGAACAGGATAACACGTCATGCCCAGAGGCAAAAAATGATTCCACTATTCAAGAGAAGGACATATCTCCACCAGAGTTAGATTCTTCTAAGGAGCAGCTTGAGAATTTGTCAAAGCGATATGAAGAGCTAGAAGCAAAATCAAAAGCAGATATTAAAGTTCTCGTTAAAGAAGTTAAATCCTTGCGTAGTTCCCAAGCAGAACTCAGGCATGAGCTTAGTAAATCTCTGAAGGAGAAATCTGAATCTGAGGTAATGTGTTATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0006810 GO:0008104 GO:0008150 GO:0010008 GO:0012505 GO:0015031 GO:0015833 GO:0016020 GO:0031090 GO:0031410 GO:0031982 GO:0033036 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0044422 GO:0044424 GO:0044433 GO:0044440 GO:0044444 GO:0044446 GO:0044464 GO:0045184 GO:0051179 GO:0051234 GO:0071702 GO:0071705 GO:0097708 GO:0098588 GO:0098805

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Protein Analysis

510

Amino Acids

57.05

Weight (kDa)

5.37

Isoelectric Point (pI)

55.12

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PX	PF00787	26 - 101	2.9e-14	PX domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005258)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G25350 AT2G25350 AT2G25350 AT2G25350 AT2G25350 AT4G32160
fragaria_vesca	FvH4_2g28930 FvH4_2g28930 FvH4_2g28930 FvH4_2g28930
malus_domestica	MD08G1155500.v1.1 MD15G1126500.v1.1
prunus_persica	Prupe.1G482400_v2.0.a1 Prupe.1G482400_v2.0.a1
pyrus_communis	pycom08g12790 pycom15g11420
rosa_chinensis	RchiOBHm_Chr6g0297751
rosa_laevigata	RLG00000011565
rosa_multiflora	Rmu_sc0002674.1_g000008
rosa_roxburghii	Rroxscaffold_7G00170230 Rroxscaffold_7G00179080
rosa_rugosa	Rorug06G0275200 Rorug06G0275200 Rorug06G0275300
rosa_samantha	Rh6AG385700 Rh6BG394200 Rh6CG400000 Rh6DG386500
rosa_wichuraiana	Rw6G033620

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	10
Acc36I	ACCTGC	1 cut(s)	403
AccB1I	GGYRCC	1 cut(s)	875
AciI	CCGC	1 cut(s)	187
AclWI	GGATC	2 cut(s)	920, 987
AcsI	RAATTY	3 cut(s)	361, 859, 1372
AcuI	CTGAAG	5 cut(s)	134, 353, 933, 1151, 1517
AfaI	GTAC	1 cut(s)	934
AfiI	CCNNNNNNNGG	3 cut(s)	136, 176, 479
AflIII	ACRYGT	2 cut(s)	658, 1281
AgsI	TTSAA	8 cut(s)	302, 714, 864, 909, 1136, 1187, 1258, 1319
AhlI	ACTAGT	1 cut(s)	1027
AjiI	CACGTC	1 cut(s)	1284
AjnI	CCWGG	2 cut(s)	236, 462
Alw21I	GWGCWC	1 cut(s)	227
Alw26I	GTCTC	2 cut(s)	446, 649
AlwI	GGATC	2 cut(s)	920, 987
AoxI	GGCC	2 cut(s)	234, 628
ApeKI	GCWGC	5 cut(s)	250, 314, 954, 1018, 1363
ApoI	RAATTY	3 cut(s)	361, 859, 1372
Asp700I	GAANNNNTTC	3 cut(s)	630, 700, 1164
AspS9I	GGNCC	2 cut(s)	321, 682
AsuHPI	GGTGA	2 cut(s)	51, 881
AvaII	GGWCC	2 cut(s)	321, 682
BanI	GGYRCC	1 cut(s)	875
Bbv12I	GWGCWC	1 cut(s)	227
BbvI	GCAGC	5 cut(s)	237, 326, 966, 1030, 1375
BccI	CCATC	2 cut(s)	390, 866
BciT130I	CCWGG	2 cut(s)	238, 464
BcoDI	GTCTC	2 cut(s)	446, 649
BcuI	ACTAGT	1 cut(s)	1027
BfaI	CTAG	7 cut(s)	318, 479, 614, 719, 1028, 1143, 1397
BfmI	CTRYAG	2 cut(s)	34, 312
BfuAI	ACCTGC	1 cut(s)	403
BglII	AGATCT	3 cut(s)	514, 532, 1054
BisI	GCNGC	5 cut(s)	251, 315, 955, 1019, 1364
BlsI	GCNGC	5 cut(s)	252, 316, 956, 1020, 1365
Bme1390I	CCNGG	2 cut(s)	238, 464
Bme18I	GGWCC	2 cut(s)	321, 682
BmgBI	CACGTC	1 cut(s)	1284
BmgT120I	GGNCC	2 cut(s)	321, 682
BmiI	GGNNCC	2 cut(s)	855, 877
BmrFI	CCNGG	2 cut(s)	238, 464
BmrI	ACTGGG	1 cut(s)	512
BmsI	GCATC	1 cut(s)	299
BmuI	ACTGGG	1 cut(s)	512
BoxI	GACNNNNGTC	1 cut(s)	339
Bpu10I	CCTNAGC	1 cut(s)	26
BpuEI	CTTGAG	2 cut(s)	945, 1388
BsaBI	GATNNNNATC	1 cut(s)	531
BsaJI	CCNNGG	3 cut(s)	174, 463, 473
Bsc4I	CCNNNNNNNGG	3 cut(s)	136, 176, 479
Bse1I	ACTGG	3 cut(s)	10, 507, 627
Bse8I	GATNNNNATC	1 cut(s)	531
BseBI	CCWGG	2 cut(s)	238, 464
BseDI	CCNNGG	3 cut(s)	174, 463, 473
BseGI	GGATG	6 cut(s)	195, 246, 290, 382, 493, 532
BseJI	GATNNNNATC	1 cut(s)	531
BseLI	CCNNNNNNNGG	3 cut(s)	136, 176, 479
BseMII	CTCAG	5 cut(s)	40, 761, 804, 1486, 1506
BseNI	ACTGG	3 cut(s)	10, 507, 627
BseXI	GCAGC	5 cut(s)	237, 326, 966, 1030, 1375
BshFI	GGCC	2 cut(s)	236, 630
BshNI	GGYRCC	1 cut(s)	875
BsiHKAI	GWGCWC	1 cut(s)	227
BslFI	GGGAC	3 cut(s)	63, 192, 603
BslI	CCNNNNNNNGG	3 cut(s)	136, 176, 479
BsmAI	GTCTC	2 cut(s)	446, 649
BsmFI	GGGAC	3 cut(s)	63, 192, 603
BsnI	GGCC	2 cut(s)	236, 630
Bsp1286I	GDGCHC	1 cut(s)	227
Bsp143I	GATC	5 cut(s)	514, 532, 912, 979, 1054
BspACI	CCGC	1 cut(s)	187
BspANI	GGCC	2 cut(s)	236, 630
BspCNI	CTCAG	5 cut(s)	39, 760, 803, 1485, 1507
BspLI	GGNNCC	2 cut(s)	855, 877
BspMAI	CTGCAG	1 cut(s)	316
BspMI	ACCTGC	1 cut(s)	403
BspPI	GGATC	2 cut(s)	920, 987
BspQI	GCTCTTC	1 cut(s)	1386
BspT107I	GGYRCC	1 cut(s)	875
BsrI	ACTGG	3 cut(s)	10, 507, 627
BssECI	CCNNGG	3 cut(s)	174, 463, 473
BssMI	GATC	5 cut(s)	514, 532, 912, 979, 1054
BssT1I	CCWWGG	2 cut(s)	174, 473
Bst2UI	CCWGG	2 cut(s)	238, 464
Bst4CI	ACNGT	2 cut(s)	350, 594
Bst6I	CTCTTC	4 cut(s)	188, 207, 1145, 1386
BstC8I	GCNNGC	4 cut(s)	23, 781, 785, 1173
BstDEI	CTNAG	9 cut(s)	26, 92, 747, 790, 824, 1356, 1472, 1484, 1515
BstENI	CCTNNNNNAGG	1 cut(s)	134
BstF5I	GGATG	6 cut(s)	195, 246, 290, 382, 493, 532
BstKTI	GATC	5 cut(s)	517, 535, 915, 982, 1057
BstMAI	GTCTC	2 cut(s)	446, 649
BstMBI	GATC	5 cut(s)	514, 532, 912, 979, 1054
BstNI	CCWGG	2 cut(s)	238, 464
BstNSI	RCATGY	2 cut(s)	25, 662
BstPAI	GACNNNNGTC	1 cut(s)	339
BstSCI	CCNGG	2 cut(s)	236, 462
BstSFI	CTRYAG	2 cut(s)	34, 312
BstV1I	GCAGC	5 cut(s)	237, 326, 966, 1030, 1375
BstX2I	RGATCY	3 cut(s)	514, 532, 1054
BstYI	RGATCY	3 cut(s)	514, 532, 1054
BsuRI	GGCC	2 cut(s)	236, 630
BtrI	CACGTC	1 cut(s)	1284
BtsCI	GGATG	6 cut(s)	195, 246, 290, 382, 493, 532
BtsI	GCAGTG	2 cut(s)	291, 1217
BtsIMutI	CAGTG	2 cut(s)	291, 1217
BveI	ACCTGC	1 cut(s)	403
Cac8I	GCNNGC	4 cut(s)	23, 781, 785, 1173
Cfr13I	GGNCC	2 cut(s)	321, 682
CseI	GACGC	1 cut(s)	974
Csp6I	GTAC	1 cut(s)	933
CviQI	GTAC	1 cut(s)	933
DdeI	CTNAG	9 cut(s)	26, 92, 747, 790, 824, 1356, 1472, 1484, 1515
DpnI	GATC	5 cut(s)	516, 534, 914, 981, 1056
DpnII	GATC	5 cut(s)	514, 532, 912, 979, 1054
DrdI	GACNNNNNNGTC	1 cut(s)	10
DseDI	GACNNNNNNGTC	1 cut(s)	10
Eam1104I	CTCTTC	4 cut(s)	188, 207, 1145, 1386
EarI	CTCTTC	4 cut(s)	188, 207, 1145, 1386
Eco130I	CCWWGG	2 cut(s)	174, 473
Eco147I	AGGCCT	2 cut(s)	236, 630
Eco47I	GGWCC	2 cut(s)	321, 682
Eco57I	CTGAAG	5 cut(s)	134, 353, 933, 1151, 1517
EcoNI	CCTNNNNNAGG	1 cut(s)	134
EcoO109I	RGGNCCY	2 cut(s)	321, 682
EcoRI	GAATTC	1 cut(s)	361
EcoRII	CCWGG	2 cut(s)	236, 462
EcoT14I	CCWWGG	2 cut(s)	174, 473
EcoT22I	ATGCAT	2 cut(s)	23, 651
ErhI	CCWWGG	2 cut(s)	174, 473
FalI	AAGNNNNNCTT	6 cut(s)	211, 243, 954, 986, 1116, 1148
FaqI	GGGAC	3 cut(s)	63, 192, 603
Fnu4HI	GCNGC	5 cut(s)	251, 315, 955, 1019, 1364
FokI	GGATG	6 cut(s)	202, 253, 277, 369, 500, 539
Fsp4HI	GCNGC	5 cut(s)	251, 315, 955, 1019, 1364
FspBI	CTAG	7 cut(s)	318, 479, 614, 719, 1028, 1143, 1397
GluI	GCNGC	5 cut(s)	251, 315, 955, 1019, 1364
HaeIII	GGCC	2 cut(s)	236, 630
HgaI	GACGC	1 cut(s)	974
HincII	GTYRAC	2 cut(s)	344, 1011
HindII	GTYRAC	2 cut(s)	344, 1011
HindIII	AAGCTT	1 cut(s)	554
HinfI	GANTC	6 cut(s)	4, 196, 308, 1307, 1349, 1511
HphI	GGTGA	2 cut(s)	51, 881
Hpy166II	GTNNAC	3 cut(s)	344, 1011, 1200
Hpy188III	TCNNGA	5 cut(s)	200, 273, 299, 1076, 1319
Hpy8I	GTNNAC	3 cut(s)	344, 1011, 1200
Hpy99I	CGWCG	1 cut(s)	1236
HpyCH4III	ACNGT	2 cut(s)	350, 594
HpyCH4IV	ACGT	1 cut(s)	1283
HpyCH4V	TGCA	7 cut(s)	21, 55, 284, 314, 649, 1018, 1210
HpyF3I	CTNAG	9 cut(s)	26, 92, 747, 790, 824, 1356, 1472, 1484, 1515
HpySE526I	ACGT	1 cut(s)	1283
Kzo9I	GATC	5 cut(s)	514, 532, 912, 979, 1054
LguI	GCTCTTC	1 cut(s)	1386
LmnI	GCTCC	1 cut(s)	1360
Lsp1109I	GCAGC	5 cut(s)	237, 326, 966, 1030, 1375
LweI	GCATC	1 cut(s)	299
MaeI	CTAG	7 cut(s)	318, 479, 614, 719, 1028, 1143, 1397
MaeII	ACGT	1 cut(s)	1283
MaeIII	GTNAC	2 cut(s)	670, 1030
MalI	GATC	5 cut(s)	516, 534, 914, 981, 1056
MboI	GATC	5 cut(s)	514, 532, 912, 979, 1054
MfeI	CAATTG	1 cut(s)	864
MflI	RGATCY	3 cut(s)	514, 532, 1054
MhlI	GDGCHC	1 cut(s)	227
MluCI	AATT	7 cut(s)	203, 302, 361, 859, 864, 938, 1372
MlyI	GAGTC	1 cut(s)	205
MmeI	TCCRAC	2 cut(s)	189, 1214
Mph1103I	ATGCAT	2 cut(s)	23, 651
MroXI	GAANNNNTTC	3 cut(s)	630, 700, 1164
MseI	TTAA	8 cut(s)	102, 123, 132, 1070, 1422, 1434, 1443, 1531
MslI	CAYNNNNRTG	1 cut(s)	920
MspR9I	CCNGG	2 cut(s)	238, 464
MunI	CAATTG	1 cut(s)	864
MvaI	CCWGG	2 cut(s)	238, 464
NdeII	GATC	5 cut(s)	514, 532, 912, 979, 1054
NlaIV	GGNNCC	2 cut(s)	855, 877
NmuCI	GTSAC	1 cut(s)	1030
NsiI	ATGCAT	2 cut(s)	23, 651
NspI	RCATGY	2 cut(s)	25, 662
PaeI	GCATGC	1 cut(s)	25
PceI	AGGCCT	2 cut(s)	236, 630
PciI	ACATGT	1 cut(s)	658
PciSI	GCTCTTC	1 cut(s)	1386
PdmI	GAANNNNTTC	3 cut(s)	630, 700, 1164
PfeI	GAWTC	4 cut(s)	308, 1307, 1349, 1511
PkrI	GCNGC	5 cut(s)	252, 316, 956, 1020, 1365
PleI	GAGTC	1 cut(s)	204
PpsI	GAGTC	1 cut(s)	204
PpuMI	RGGWCCY	2 cut(s)	321, 682
PscI	ACATGT	1 cut(s)	658
PshAI	GACNNNNGTC	1 cut(s)	339
Psp5II	RGGWCCY	2 cut(s)	321, 682
Psp6I	CCWGG	2 cut(s)	236, 462
PspGI	CCWGG	2 cut(s)	236, 462
PspN4I	GGNNCC	2 cut(s)	855, 877
PspPI	GGNCC	2 cut(s)	321, 682
PspPPI	RGGWCCY	2 cut(s)	321, 682
PstI	CTGCAG	1 cut(s)	316
PsuI	RGATCY	3 cut(s)	514, 532, 1054
RsaI	GTAC	1 cut(s)	934
RsaNI	GTAC	1 cut(s)	933
RseI	CAYNNNNRTG	1 cut(s)	920
SapI	GCTCTTC	1 cut(s)	1386
SaqAI	TTAA	8 cut(s)	102, 123, 132, 1070, 1422, 1434, 1443, 1531
SatI	GCNGC	5 cut(s)	251, 315, 955, 1019, 1364
Sau3AI	GATC	5 cut(s)	514, 532, 912, 979, 1054
Sau96I	GGNCC	2 cut(s)	321, 682
SchI	GAGTC	1 cut(s)	205
ScrFI	CCNGG	2 cut(s)	238, 464
SduI	GDGCHC	1 cut(s)	227
SfaNI	GCATC	1 cut(s)	299
SfcI	CTRYAG	2 cut(s)	34, 312
SinI	GGWCC	2 cut(s)	321, 682
SmiMI	CAYNNNNRTG	1 cut(s)	920
SmlI	CTYRAG	2 cut(s)	960, 1367
SmoI	CTYRAG	2 cut(s)	960, 1367
SpeI	ACTAGT	1 cut(s)	1027
SphI	GCATGC	1 cut(s)	25
Sse9I	AATT	7 cut(s)	203, 302, 361, 859, 864, 938, 1372
SseBI	AGGCCT	2 cut(s)	236, 630
SsiI	CCGC	1 cut(s)	187
SspI	AATATT	1 cut(s)	580
SspMI	CTAG	7 cut(s)	318, 479, 614, 719, 1028, 1143, 1397
StuI	AGGCCT	2 cut(s)	236, 630
StyD4I	CCNGG	2 cut(s)	236, 462
StyI	CCWWGG	2 cut(s)	174, 473
TaaI	ACNGT	2 cut(s)	350, 594
TaiI	ACGT	1 cut(s)	1286
TaqI	TCGA	2 cut(s)	510, 882
TasI	AATT	7 cut(s)	203, 302, 361, 859, 864, 938, 1372
TatI	WGTACW	1 cut(s)	932
TfiI	GAWTC	4 cut(s)	308, 1307, 1349, 1511
Tru1I	TTAA	8 cut(s)	102, 123, 132, 1070, 1422, 1434, 1443, 1531
Tru9I	TTAA	8 cut(s)	102, 123, 132, 1070, 1422, 1434, 1443, 1531
TscAI	CASTG	2 cut(s)	291, 1217
TseFI	GTSAC	1 cut(s)	1030
TseI	GCWGC	5 cut(s)	250, 314, 954, 1018, 1363
Tsp45I	GTSAC	1 cut(s)	1030
TspDTI	ATGAA	5 cut(s)	206, 543, 810, 1277, 1404
TspRI	CASTG	2 cut(s)	291, 1217
VpaK11BI	GGWCC	2 cut(s)	321, 682
XagI	CCTNNNNNAGG	1 cut(s)	134
XapI	RAATTY	3 cut(s)	361, 859, 1372
XceI	RCATGY	2 cut(s)	25, 662
XmnI	GAANNNNTTC	3 cut(s)	630, 700, 1164
XspI	CTAG	7 cut(s)	318, 479, 614, 719, 1028, 1143, 1397
Zsp2I	ATGCAT	2 cut(s)	23, 651

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.