Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb2

Orthogroup ID

OG0012549

Physical Location & Seq

Genomic Coordinates Reverse (-)

23650743 .. 23653876

Gene Structure 3134 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_2g30580.t2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1032 bp

ATGGGGTTATTTAGAGGCTTGGTTGTGGCTTTACTTTGCTTCAATGTCTTGGTGGGTTTTGTGTTTGGGATTGGAGTCAACTGGGGAACTCAAGATACACATGCAATCCCTCCGGCTTCGGTTGTGAAGATGATCAAGGATAATGGGATTCAGAAGGTTAAGCTTTTTGATGCAGATTATAATATCTTGAATGCTCTGAGCAAGTCTGGGCTTCAGGTCATGGTGGGAATACCCAATGAGATGCTTTCTGGTTTGGCTAATAGTGTGGCTGCAGCTGAGAATTGGGTCTCCAAGAATGTCTCATCATATGTCTCCAATGGCGTAGATATTAGGTATGCTGCAGTGGGCAATGAACCGCTCTTGTCAGCATTCAATGGAAGCTTTCTTACAACACTATTTCCCGCTCTGAAGAACATCCAGTCAGCTCTTATAAAAGCCGGTCTGAGCAATCAGGTTAAGGTCACTATTCCCCTCAACGCTGACGTCTATGACAGTGGCACTTCTACTAAACCTTCTGATGGTGACTTCCGGGCAGATACAAAGGACCTCATGCTGAACATTGTCCAATTCTTGAGTGACAATGGTGCTGCATTCACTGTCAATATCTATCCTTTCATAAGTCTCTATAATAATCCCGGTTTCCCTGCGGACTATGCCTTCTTTGACGGATTCTCAAGTCCCATTGATGACAATGGGAAAATCTATCAGAATGTGTTTGATGCAAACCATGATACACTAGTATGGGCACTAGCAAAGAATGGATTCGGTAACTTGTCTATAATCGTTGGAGAGATTGGTTGGCCTACTGATGGGGACCAGAATGCAAATTTGCAGTTAGCCCAGCGGTTCAACCAGGGTTTCATGACCAGGATCAAGAACAATGTAGGCACTCCCATGAGACCTGGCCCTGTAGATGCTTACTTATTCAGCCTTGTTGATGAAGATGCCAAGAGCATTCAGCCAGGTTTCCAAATCTTTCAACTGTCACCAACTCCGATCCATCAACTGGAGACTGCAAATTTAGGATCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001871 GO:0003674 GO:0003824 GO:0004553 GO:0005488 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005886 GO:0005911 GO:0009505 GO:0009506 GO:0016020 GO:0016787 GO:0016798 GO:0030054 GO:0030246 GO:0030247 GO:0030312 GO:0031224 GO:0031225 GO:0031226 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044425 GO:0044444 GO:0044459 GO:0044464 GO:0046658 GO:0055044 GO:0071944

KEGG Pathways

Metabolic & Signaling

ko00500 map00500

Pfam Domains

Protein Families

Glyco_hydro_17 X8

Protein Analysis

344

Amino Acids

37.0

Weight (kDa)

4.82

Isoelectric Point (pI)

18.63

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Glyco_hydro_17	PF00332	24 - 342	1.1e-64	Glycosyl hydrolases family 17
X8	PF07983	361 - 430	2.9e-13	X8 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012549)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G31140
fragaria_vesca	FvH4_2g30580
malus_domestica	MD08G1132400.v1.1 MD15G1113000.v1.1
prunus_persica	Prupe.1G463500_v2.0.a1
pyrus_communis	pycom08g11080 pycom15g10150
rosa_chinensis	RchiOBHm_Chr6g0312431
rosa_laevigata	RLG00000010329
rosa_multiflora	Rmu_sc0008363.1_g000019
rosa_roxburghii	Rroxscaffold_7G00156800
rosa_rugosa	Rorug06G0395600 Rorug06G0395700 Rorug06G0395700
rosa_samantha	Rh6AG513100 Rh6BG523900 Rh6CG529400 Rh6DG515200
rosa_wichuraiana	Rw6G044600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	180, 431
AatII	GACGTC	1 cut(s)	486
AccB7I	CCANNNNNTGG	1 cut(s)	1006
AccBSI	CCGCTC	2 cut(s)	358, 404
AciI	CCGC	4 cut(s)	356, 402, 647, 844
AclWI	GGATC	2 cut(s)	878, 991
AcsI	RAATTY	2 cut(s)	826, 1018
AcuI	CTGAAG	2 cut(s)	197, 428
AcyI	GRCGYC	1 cut(s)	483
AfiI	CCNNNNNNNGG	3 cut(s)	518, 809, 1006
AgsI	TTSAA	5 cut(s)	43, 190, 373, 850, 980
AhlI	ACTAGT	1 cut(s)	736
AjnI	CCWGG	4 cut(s)	852, 866, 901, 961
AluBI	AGCT	4 cut(s)	163, 275, 381, 425
AluI	AGCT	4 cut(s)	163, 275, 381, 425
Alw26I	GTCTC	6 cut(s)	292, 304, 316, 626, 892, 1004
AlwI	GGATC	2 cut(s)	878, 991
AoxI	GGCC	2 cut(s)	800, 904
ApeKI	GCWGC	4 cut(s)	269, 272, 338, 587
ApoI	RAATTY	2 cut(s)	826, 1018
Asp700I	GAANNNNTTC	1 cut(s)	761
AspS9I	GGNCC	3 cut(s)	544, 814, 905
AsuC2I	CCSGG	2 cut(s)	530, 636
AsuHPI	GGTGA	2 cut(s)	533, 978
AvaII	GGWCC	2 cut(s)	544, 814
BaeGI	GKGCMC	1 cut(s)	748
BaeI	ACNNNNGTAYC	2 cut(s)	723, 756
BarI	GAAGNNNNNNTAC	2 cut(s)	370, 402
BbvI	GCAGC	4 cut(s)	256, 284, 325, 574
BccI	CCATC	3 cut(s)	512, 803, 1008
BciT130I	CCWGG	4 cut(s)	854, 868, 903, 963
BclI	TGATCA	1 cut(s)	132
BcnI	CCSGG	2 cut(s)	530, 636
BcoDI	GTCTC	6 cut(s)	292, 304, 316, 626, 892, 1004
BcuI	ACTAGT	1 cut(s)	736
BfaI	CTAG	2 cut(s)	737, 749
BfmI	CTRYAG	3 cut(s)	270, 339, 909
BisI	GCNGC	4 cut(s)	270, 273, 339, 588
BlsI	GCNGC	4 cut(s)	271, 274, 340, 589
Bme1390I	CCNGG	6 cut(s)	530, 636, 854, 868, 903, 963
Bme18I	GGWCC	2 cut(s)	544, 814
BmgT120I	GGNCC	3 cut(s)	544, 814, 905
BmiI	GGNNCC	1 cut(s)	815
BmrFI	CCNGG	6 cut(s)	530, 636, 854, 868, 903, 963
BmrI	ACTGGG	1 cut(s)	91
BmsI	GCATC	5 cut(s)	160, 231, 709, 904, 934
BmuI	ACTGGG	1 cut(s)	91
BpmI	CTGGAG	1 cut(s)	1028
BpuEI	CTTGAG	3 cut(s)	75, 592, 658
BpuMI	CCSGG	2 cut(s)	530, 636
BsaHI	GRCGYC	1 cut(s)	483
BsaI	GGTCTC	2 cut(s)	292, 892
BsaJI	CCNNGG	1 cut(s)	853
Bsc4I	CCNNNNNNNGG	3 cut(s)	518, 809, 1006
Bse118I	RCCGGY	1 cut(s)	437
Bse1I	ACTGG	3 cut(s)	86, 418, 1011
Bse3DI	GCAATG	1 cut(s)	355
BseBI	CCWGG	4 cut(s)	854, 868, 903, 963
BseDI	CCNNGG	1 cut(s)	853
BseGI	GGATG	1 cut(s)	414
BseLI	CCNNNNNNNGG	3 cut(s)	518, 809, 1006
BseMI	GCAATG	1 cut(s)	355
BseMII	CTCAG	3 cut(s)	188, 267, 434
BseNI	ACTGG	3 cut(s)	86, 418, 1011
BseSI	GKGCMC	1 cut(s)	748
BseXI	GCAGC	4 cut(s)	256, 284, 325, 574
BseYI	CCCAGC	1 cut(s)	840
BshFI	GGCC	2 cut(s)	802, 906
BsiSI	CCGG	4 cut(s)	113, 438, 529, 636
BslFI	GGGAC	2 cut(s)	663, 827
BslI	CCNNNNNNNGG	3 cut(s)	518, 809, 1006
BsmAI	GTCTC	6 cut(s)	292, 304, 316, 626, 892, 1004
BsmFI	GGGAC	2 cut(s)	663, 827
BsmI	GAATGC	5 cut(s)	196, 368, 590, 826, 954
BsnI	GGCC	2 cut(s)	802, 906
Bso31I	GGTCTC	2 cut(s)	292, 892
Bsp1286I	GDGCHC	1 cut(s)	748
Bsp143I	GATC	4 cut(s)	132, 870, 996, 1025
BspACI	CCGC	4 cut(s)	356, 402, 647, 844
BspANI	GGCC	2 cut(s)	802, 906
BspCNI	CTCAG	3 cut(s)	189, 268, 435
BspHI	TCATGA	2 cut(s)	861, 1028
BspLI	GGNNCC	1 cut(s)	815
BspMAI	CTGCAG	2 cut(s)	274, 343
BspPI	GGATC	2 cut(s)	878, 991
BspTNI	GGTCTC	2 cut(s)	292, 892
BsrBI	CCGCTC	2 cut(s)	358, 404
BsrDI	GCAATG	1 cut(s)	355
BsrFI	RCCGGY	1 cut(s)	437
BsrI	ACTGG	3 cut(s)	86, 418, 1011
BssAI	RCCGGY	1 cut(s)	437
BssECI	CCNNGG	1 cut(s)	853
BssMI	GATC	4 cut(s)	132, 870, 996, 1025
BssNI	GRCGYC	1 cut(s)	483
Bst2UI	CCWGG	4 cut(s)	854, 868, 903, 963
Bst4CI	ACNGT	3 cut(s)	494, 598, 984
BstACI	GRCGYC	1 cut(s)	483
BstDEI	CTNAG	3 cut(s)	197, 276, 443
BstF5I	GGATG	1 cut(s)	414
BstKTI	GATC	4 cut(s)	135, 873, 999, 1028
BstMAI	GTCTC	6 cut(s)	292, 304, 316, 626, 892, 1004
BstMBI	GATC	4 cut(s)	132, 870, 996, 1025
BstMWI	GCNNNNNNNGC	1 cut(s)	653
BstNI	CCWGG	4 cut(s)	854, 868, 903, 963
BstNSI	RCATGY	1 cut(s)	104
BstSCI	CCNGG	6 cut(s)	528, 634, 852, 866, 901, 961
BstSFI	CTRYAG	3 cut(s)	270, 339, 909
BstSLI	GKGCMC	1 cut(s)	748
BstV1I	GCAGC	4 cut(s)	256, 284, 325, 574
BsuRI	GGCC	2 cut(s)	802, 906
BtsCI	GGATG	1 cut(s)	414
BtsI	GCAGTG	1 cut(s)	348
BtsIMutI	CAGTG	3 cut(s)	348, 499, 594
CciI	TCATGA	2 cut(s)	861, 1028
Cfr10I	RCCGGY	1 cut(s)	437
Cfr13I	GGNCC	3 cut(s)	544, 814, 905
CviAII	CATG	7 cut(s)	101, 220, 550, 728, 862, 895, 1029
DdeI	CTNAG	3 cut(s)	197, 276, 443
DpnI	GATC	4 cut(s)	134, 872, 998, 1027
DpnII	GATC	4 cut(s)	132, 870, 996, 1025
Eco31I	GGTCTC	2 cut(s)	292, 892
Eco47I	GGWCC	2 cut(s)	544, 814
Eco57I	CTGAAG	2 cut(s)	197, 428
EcoO109I	RGGNCCY	1 cut(s)	544
EcoRII	CCWGG	4 cut(s)	852, 866, 901, 961
FaeI	CATG	7 cut(s)	104, 223, 553, 731, 865, 898, 1032
FaqI	GGGAC	2 cut(s)	663, 827
FatI	CATG	7 cut(s)	100, 219, 549, 727, 861, 894, 1028
FauI	CCCGC	1 cut(s)	409
FauNDI	CATATG	1 cut(s)	307
FbaI	TGATCA	1 cut(s)	132
Fnu4HI	GCNGC	4 cut(s)	270, 273, 339, 588
FokI	GGATG	1 cut(s)	401
Fsp4HI	GCNGC	4 cut(s)	270, 273, 339, 588
FspBI	CTAG	2 cut(s)	737, 749
GluI	GCNGC	4 cut(s)	270, 273, 339, 588
GsaI	CCCAGC	1 cut(s)	844
GsuI	CTGGAG	1 cut(s)	1028
HaeIII	GGCC	2 cut(s)	802, 906
HapII	CCGG	4 cut(s)	113, 438, 529, 636
Hin1I	GRCGYC	1 cut(s)	483
Hin1II	CATG	7 cut(s)	104, 223, 553, 731, 865, 898, 1032
HincII	GTYRAC	1 cut(s)	79
HindII	GTYRAC	1 cut(s)	79
HindIII	AAGCTT	2 cut(s)	161, 379
HinfI	GANTC	4 cut(s)	75, 148, 669, 762
HpaII	CCGG	4 cut(s)	113, 438, 529, 636
HphI	GGTGA	2 cut(s)	533, 978
Hpy166II	GTNNAC	1 cut(s)	79
Hpy188I	TCNGA	7 cut(s)	153, 198, 408, 444, 517, 708, 996
Hpy188III	TCNNGA	6 cut(s)	92, 187, 571, 862, 874, 1029
Hpy8I	GTNNAC	1 cut(s)	79
HpyAV	CCTTC	3 cut(s)	148, 522, 667
HpyCH4III	ACNGT	3 cut(s)	494, 598, 984
HpyCH4IV	ACGT	1 cut(s)	483
HpyCH4V	TGCA	9 cut(s)	104, 173, 272, 341, 590, 722, 824, 832, 1016
HpyF10VI	GCNNNNNNNGC	1 cut(s)	653
HpyF3I	CTNAG	3 cut(s)	197, 276, 443
HpySE526I	ACGT	1 cut(s)	483
Hsp92I	GRCGYC	1 cut(s)	483
Hsp92II	CATG	7 cut(s)	104, 223, 553, 731, 865, 898, 1032
Ksp22I	TGATCA	1 cut(s)	132
Kzo9I	GATC	4 cut(s)	132, 870, 996, 1025
Lsp1109I	GCAGC	4 cut(s)	256, 284, 325, 574
LweI	GCATC	5 cut(s)	160, 231, 709, 904, 934
MaeI	CTAG	2 cut(s)	737, 749
MaeII	ACGT	1 cut(s)	483
MaeIII	GTNAC	5 cut(s)	460, 521, 575, 767, 984
MalI	GATC	4 cut(s)	134, 872, 998, 1027
MbiI	CCGCTC	2 cut(s)	358, 404
MboI	GATC	4 cut(s)	132, 870, 996, 1025
MboII	GAAGA	3 cut(s)	139, 421, 953
MhlI	GDGCHC	1 cut(s)	748
MluCI	AATT	4 cut(s)	280, 566, 826, 1018
MlyI	GAGTC	1 cut(s)	84
MmeI	TCCRAC	1 cut(s)	766
MnlI	CCTC	4 cut(s)	8, 120, 482, 557
MroXI	GAANNNNTTC	1 cut(s)	761
MseI	TTAA	2 cut(s)	159, 456
MslI	CAYNNNNRTG	2 cut(s)	739, 893
MspA1I	CMGCKG	2 cut(s)	275, 844
MspI	CCGG	4 cut(s)	113, 438, 529, 636
MspR9I	CCNGG	6 cut(s)	530, 636, 854, 868, 903, 963
Mva1269I	GAATGC	5 cut(s)	196, 368, 590, 826, 954
MvaI	CCWGG	4 cut(s)	854, 868, 903, 963
MwoI	GCNNNNNNNGC	1 cut(s)	653
NciI	CCSGG	2 cut(s)	530, 636
NdeI	CATATG	1 cut(s)	307
NdeII	GATC	4 cut(s)	132, 870, 996, 1025
NlaIII	CATG	7 cut(s)	104, 223, 553, 731, 865, 898, 1032
NlaIV	GGNNCC	1 cut(s)	815
NmuCI	GTSAC	4 cut(s)	460, 521, 575, 984
NspI	RCATGY	1 cut(s)	104
PagI	TCATGA	2 cut(s)	861, 1028
PctI	GAATGC	5 cut(s)	196, 368, 590, 826, 954
PdmI	GAANNNNTTC	1 cut(s)	761
PfeI	GAWTC	3 cut(s)	148, 669, 762
PflMI	CCANNNNNTGG	1 cut(s)	1006
PkrI	GCNGC	4 cut(s)	271, 274, 340, 589
PleI	GAGTC	1 cut(s)	83
PpsI	GAGTC	1 cut(s)	83
PpuMI	RGGWCCY	1 cut(s)	544
PsiI	TTATAA	2 cut(s)	180, 431
Psp5II	RGGWCCY	1 cut(s)	544
Psp6I	CCWGG	4 cut(s)	852, 866, 901, 961
PspFI	CCCAGC	1 cut(s)	840
PspGI	CCWGG	4 cut(s)	852, 866, 901, 961
PspN4I	GGNNCC	1 cut(s)	815
PspPI	GGNCC	3 cut(s)	544, 814, 905
PspPPI	RGGWCCY	1 cut(s)	544
PsrI	GAACNNNNNNTAC	2 cut(s)	79, 111
PstI	CTGCAG	2 cut(s)	274, 343
PvuII	CAGCTG	1 cut(s)	275
RseI	CAYNNNNRTG	2 cut(s)	739, 893
SaqAI	TTAA	2 cut(s)	159, 456
SatI	GCNGC	4 cut(s)	270, 273, 339, 588
Sau3AI	GATC	4 cut(s)	132, 870, 996, 1025
Sau96I	GGNCC	3 cut(s)	544, 814, 905
SchI	GAGTC	1 cut(s)	84
ScrFI	CCNGG	6 cut(s)	530, 636, 854, 868, 903, 963
SduI	GDGCHC	1 cut(s)	748
SfaNI	GCATC	5 cut(s)	160, 231, 709, 904, 934
SfcI	CTRYAG	3 cut(s)	270, 339, 909
SinI	GGWCC	2 cut(s)	544, 814
SmiMI	CAYNNNNRTG	2 cut(s)	739, 893
SmlI	CTYRAG	3 cut(s)	90, 571, 673
SmoI	CTYRAG	3 cut(s)	90, 571, 673
SpeI	ACTAGT	1 cut(s)	736
Sse9I	AATT	4 cut(s)	280, 566, 826, 1018
SsiI	CCGC	4 cut(s)	356, 402, 647, 844
SspMI	CTAG	2 cut(s)	737, 749
StyD4I	CCNGG	6 cut(s)	528, 634, 852, 866, 901, 961
TaaI	ACNGT	3 cut(s)	494, 598, 984
TaiI	ACGT	1 cut(s)	486
TasI	AATT	4 cut(s)	280, 566, 826, 1018
TfiI	GAWTC	3 cut(s)	148, 669, 762
Tru1I	TTAA	2 cut(s)	159, 456
Tru9I	TTAA	2 cut(s)	159, 456
TscAI	CASTG	3 cut(s)	348, 499, 601
TseFI	GTSAC	4 cut(s)	460, 521, 575, 984
TseI	GCWGC	4 cut(s)	269, 272, 338, 587
Tsp45I	GTSAC	4 cut(s)	460, 521, 575, 984
TspDTI	ATGAA	4 cut(s)	366, 604, 850, 954
TspGWI	ACGGA	1 cut(s)	681
TspRI	CASTG	3 cut(s)	348, 499, 601
Van91I	CCANNNNNTGG	1 cut(s)	1006
VpaK11BI	GGWCC	2 cut(s)	544, 814
XapI	RAATTY	2 cut(s)	826, 1018
XceI	RCATGY	1 cut(s)	104
XmnI	GAANNNNTTC	1 cut(s)	761
XspI	CTAG	2 cut(s)	737, 749
ZraI	GACGTC	1 cut(s)	484

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.