Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0012549

Physical Location & Seq

Genomic Coordinates Reverse (-)

54101426 .. 54104199

Gene Structure 2774 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0395700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1137 bp

ATGGAGGGAAGTAAAGTTGGGAGCTTTGAGAATGGGAGTACTAGCGAGGGTCGGCCTCCGAACCCGGCGGCGTACTGGCGGTGCTACGGCCGCGACGACGGCGTTCCGGCGGCCCCGTGCAAGAAGACTCTTGTTCGACACACATCTCTTCAGATGAGGACGAAGGCGTCAGACGTCACGGTTGAACTGGGAGTAGAAGAAGAGAAGTATGAGTCGAAGTTCATTCCAATTGTGCGCTCTGGAGCATGGACTGACATTGGTTCTCGCTCAAACATGGAAGATGTTTATGTCTGTGTGGACAATTTTATGCATGACTATGGTCTCAAGAATTTCACTGATGGCCCCAGTGCCTTCTACGGGGTCTTTGATGGACATGGAGGAAAGCATGCCGCTGACTTTGCTTGCTCTAATTTGCCAAAGTTCATTTTTGAGGATGAAGACTTCCCTGGTGATATTCAAAAGGTTGTAAGTTCAGCATTTCTGCAAACTGACACTGCCTTTCAAGAAGCCTGCACTTTGGATGCTACCCTTGCTTCTGGTACCACTGCATTGACAGCTCTTCTTGTTGGAAGGCTGTTGGTGGTAGCTAATGCTGGAGACTGTCGAGCAGTGCTATGCCGCCGTGGAAAAGCAATTGCGATGTCAAGCGATCACAAACCTATATGCAGCAAAGAGATCAAACGCGTCGAGGCATGTGGAGGATCAGTGTATGATGGCTACCTTAATGGGCAGCTTAATGTCACTCGCGCTTTAGGAGACTGGCATATGGAAGGAATGAAGAGCAGGGATGGTGGGCCACTCAGTGCAGAGCCAGAGGTTAAGACTGTAAAACTAACGGAGGAAGACGAGTTCCTTATCATTGGCTGTGATGGGATCTGGGATGTGTTTAGGAGTCAAAATGCAGTGGATTTTGCTCGTCGCAGGCTTCAGGAGCACAATGACCCAGCCACATGTAGCAAGGATTTAGTTGATGAGGCTTTGAAGAGGAAGAGTAGCGACAATCTGGCTGTTGTGGTAGTTTGCTTCCAACACGAGCCTCCACCCAATTTGATTGCCCCTCGCTCAAGAGTGCAGAGGAGCTTCTCTGCTGAAGGTTTGAGGGAGTTGCAAAGCTTCTTGGATGACTTGAAAACTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001871 GO:0003674 GO:0003824 GO:0004553 GO:0005488 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005886 GO:0005911 GO:0009505 GO:0009506 GO:0016020 GO:0016787 GO:0016798 GO:0030054 GO:0030246 GO:0030247 GO:0030312 GO:0031224 GO:0031225 GO:0031226 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044425 GO:0044444 GO:0044459 GO:0044464 GO:0046658 GO:0055044 GO:0071944

KEGG Pathways

Metabolic & Signaling

ko00500 map00500

Pfam Domains

Protein Families

Glyco_hydro_17 X8

Protein Analysis

378

Amino Acids

41.45

Weight (kDa)

5.32

Isoelectric Point (pI)

47.06

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PP2C	PF00481	87 - 334	8.1e-70	Protein phosphatase 2C

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012549)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G31140
fragaria_vesca	FvH4_2g30580
malus_domestica	MD08G1132400.v1.1 MD15G1113000.v1.1
prunus_persica	Prupe.1G463500_v2.0.a1
pyrus_communis	pycom08g11080 pycom15g10150
rosa_chinensis	RchiOBHm_Chr6g0312431
rosa_laevigata	RLG00000010329
rosa_multiflora	Rmu_sc0008363.1_g000019
rosa_roxburghii	Rroxscaffold_7G00156800
rosa_rugosa	Rorug06G0395600 Rorug06G0395700 Rorug06G0395700
rosa_samantha	Rh6AG513100 Rh6BG523900 Rh6CG529400 Rh6DG515200
rosa_wichuraiana	Rw6G044600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	166
AatII	GACGTC	1 cut(s)	177
Acc65I	GGTACC	1 cut(s)	539
AccB1I	GGYRCC	1 cut(s)	539
AccII	CGCG	3 cut(s)	93, 684, 747
AciI	CCGC	6 cut(s)	68, 79, 91, 110, 390, 619
AclWI	GGATC	2 cut(s)	709, 881
AcoI	YGGCCR	1 cut(s)	88
AcsI	RAATTY	1 cut(s)	328
AcuI	CTGAAG	3 cut(s)	134, 911, 1110
AcyI	GRCGYC	2 cut(s)	167, 174
AdeI	CACNNNGTG	1 cut(s)	803
AfaI	GTAC	3 cut(s)	40, 74, 541
AfiI	CCNNNNNNNGG	1 cut(s)	357
AflIII	ACRYGT	2 cut(s)	682, 950
AgsI	TTSAA	5 cut(s)	185, 458, 503, 982, 1129
AjnI	CCWGG	1 cut(s)	445
AloI	GAACNNNNNNTCC	2 cut(s)	833, 865
AluBI	AGCT	6 cut(s)	24, 557, 587, 733, 1080, 1113
AluI	AGCT	6 cut(s)	24, 557, 587, 733, 1080, 1113
Alw21I	GWGCWC	1 cut(s)	936
Alw26I	GTCTC	3 cut(s)	326, 591, 750
AlwI	GGATC	2 cut(s)	709, 881
AoxI	GGCC	5 cut(s)	53, 88, 111, 340, 794
ApeKI	GCWGC	2 cut(s)	666, 730
ApoI	RAATTY	1 cut(s)	328
Asp718I	GGTACC	1 cut(s)	539
AspLEI	GCGC	2 cut(s)	237, 749
AspS9I	GGNCC	3 cut(s)	112, 341, 794
AsuC2I	CCSGG	1 cut(s)	65
AsuHPI	GGTGA	1 cut(s)	461
BanI	GGYRCC	1 cut(s)	539
BauI	CACGAG	1 cut(s)	1031
BbsI	GAAGAC	3 cut(s)	131, 444, 849
Bbv12I	GWGCWC	1 cut(s)	936
BbvI	GCAGC	2 cut(s)	678, 742
BccI	CCATC	5 cut(s)	332, 362, 707, 782, 863
BceAI	ACGGC	3 cut(s)	103, 115, 606
BciT130I	CCWGG	1 cut(s)	447
BcnI	CCSGG	1 cut(s)	65
BcoDI	GTCTC	3 cut(s)	326, 591, 750
BfaI	CTAG	1 cut(s)	42
BisI	GCNGC	7 cut(s)	69, 91, 111, 390, 619, 667, 731
BlsI	GCNGC	7 cut(s)	70, 92, 112, 391, 620, 668, 732
BmcAI	AGTACT	1 cut(s)	40
Bme1390I	CCNGG	2 cut(s)	65, 447
BmgT120I	GGNCC	3 cut(s)	112, 341, 794
BmiI	GGNNCC	3 cut(s)	114, 343, 541
BmrFI	CCNGG	2 cut(s)	65, 447
BmrI	ACTGGG	2 cut(s)	197, 339
BmsI	GCATC	1 cut(s)	511
BmuI	ACTGGG	2 cut(s)	197, 339
BoxI	GACNNNNGTC	1 cut(s)	318
BpiI	GAAGAC	3 cut(s)	131, 444, 849
BpmI	CTGGAG	2 cut(s)	261, 615
BpuEI	CTTGAG	2 cut(s)	308, 1048
BpuMI	CCSGG	1 cut(s)	65
BsaHI	GRCGYC	2 cut(s)	167, 174
BsaI	GGTCTC	1 cut(s)	326
BsaJI	CCNNGG	2 cut(s)	445, 622
BsaXI	ACNNNNNCTCC	2 cut(s)	690, 720
Bsc4I	CCNNNNNNNGG	1 cut(s)	357
Bse1I	ACTGG	4 cut(s)	80, 192, 345, 764
BseBI	CCWGG	1 cut(s)	447
BseDI	CCNNGG	2 cut(s)	445, 622
BseGI	GGATG	5 cut(s)	439, 526, 793, 886, 1126
BseLI	CCNNNNNNNGG	1 cut(s)	357
BseMII	CTCAG	1 cut(s)	814
BseNI	ACTGG	4 cut(s)	80, 192, 345, 764
BseRI	GAGGAG	1 cut(s)	1090
BseX3I	CGGCCG	1 cut(s)	88
BseXI	GCAGC	2 cut(s)	678, 742
BseYI	CCCAGC	1 cut(s)	943
BsgI	GTGCAG	3 cut(s)	496, 825, 1091
Bsh1236I	CGCG	3 cut(s)	93, 684, 747
Bsh1285I	CGRYCG	1 cut(s)	91
BshFI	GGCC	5 cut(s)	55, 90, 113, 342, 796
BshNI	GGYRCC	1 cut(s)	539
BsiEI	CGRYCG	1 cut(s)	91
BsiHKAI	GWGCWC	1 cut(s)	936
BsiSI	CCGG	2 cut(s)	65, 107
BslI	CCNNNNNNNGG	1 cut(s)	357
BsmAI	GTCTC	3 cut(s)	326, 591, 750
BsnI	GGCC	5 cut(s)	55, 90, 113, 342, 796
Bso31I	GGTCTC	1 cut(s)	326
Bsp1286I	GDGCHC	1 cut(s)	936
Bsp143I	GATC	4 cut(s)	649, 675, 701, 873
BspACI	CCGC	6 cut(s)	68, 79, 91, 110, 390, 619
BspANI	GGCC	5 cut(s)	55, 90, 113, 342, 796
BspCNI	CTCAG	1 cut(s)	813
BspFNI	CGCG	3 cut(s)	93, 684, 747
BspLI	GGNNCC	3 cut(s)	114, 343, 541
BspPI	GGATC	2 cut(s)	709, 881
BspQI	GCTCTTC	2 cut(s)	564, 773
BspT107I	GGYRCC	1 cut(s)	539
BspTNI	GGTCTC	1 cut(s)	326
BsrI	ACTGG	4 cut(s)	80, 192, 345, 764
BssECI	CCNNGG	2 cut(s)	445, 622
BssMI	GATC	4 cut(s)	649, 675, 701, 873
BssNI	GRCGYC	2 cut(s)	167, 174
BssSI	CACGAG	1 cut(s)	1031
Bst2BI	CACGAG	1 cut(s)	1031
Bst2UI	CCWGG	1 cut(s)	447
Bst4CI	ACNGT	3 cut(s)	181, 602, 826
Bst6I	CTCTTC	6 cut(s)	153, 195, 564, 773, 977, 983
BstACI	GRCGYC	2 cut(s)	167, 174
BstC8I	GCNNGC	4 cut(s)	387, 403, 511, 923
BstDEI	CTNAG	1 cut(s)	800
BstDSI	CCRYGG	1 cut(s)	622
BstF5I	GGATG	5 cut(s)	439, 526, 793, 886, 1126
BstFNI	CGCG	3 cut(s)	93, 684, 747
BstHHI	GCGC	2 cut(s)	237, 749
BstKTI	GATC	4 cut(s)	652, 678, 704, 876
BstMAI	GTCTC	3 cut(s)	326, 591, 750
BstMBI	GATC	4 cut(s)	649, 675, 701, 873
BstMCI	CGRYCG	1 cut(s)	91
BstMWI	GCNNNNNNNGC	6 cut(s)	90, 99, 398, 530, 554, 931
BstNI	CCWGG	1 cut(s)	447
BstNSI	RCATGY	3 cut(s)	389, 696, 954
BstPAI	GACNNNNGTC	1 cut(s)	318
BstSCI	CCNGG	2 cut(s)	63, 445
BstUI	CGCG	3 cut(s)	93, 684, 747
BstV1I	GCAGC	2 cut(s)	678, 742
BstV2I	GAAGAC	3 cut(s)	131, 444, 849
BstX2I	RGATCY	1 cut(s)	873
BstYI	RGATCY	1 cut(s)	873
BstZI	CGGCCG	1 cut(s)	88
BsuRI	GGCC	5 cut(s)	55, 90, 113, 342, 796
BtgI	CCRYGG	1 cut(s)	622
BtgZI	GCGATG	1 cut(s)	653
BtsCI	GGATG	5 cut(s)	439, 526, 793, 886, 1126
BtsI	GCAGTG	4 cut(s)	492, 543, 615, 909
BtsIMutI	CAGTG	8 cut(s)	333, 352, 492, 543, 615, 711, 808, 909
Cac8I	GCNNGC	4 cut(s)	387, 403, 511, 923
CfoI	GCGC	2 cut(s)	237, 749
Cfr13I	GGNCC	3 cut(s)	112, 341, 794
CseI	GACGC	2 cut(s)	156, 673
Csp6I	GTAC	3 cut(s)	39, 73, 540
CspCI	CAANNNNNGTGG	2 cut(s)	1029, 1064
CviAII	CATG	7 cut(s)	246, 274, 311, 374, 386, 693, 951
CviQI	GTAC	3 cut(s)	39, 73, 540
DdeI	CTNAG	1 cut(s)	800
DpnI	GATC	4 cut(s)	651, 677, 703, 875
DpnII	GATC	4 cut(s)	649, 675, 701, 873
DraIII	CACNNNGTG	1 cut(s)	803
DrdI	GACNNNNNNGTC	1 cut(s)	166
DseDI	GACNNNNNNGTC	1 cut(s)	166
EaeI	YGGCCR	1 cut(s)	88
EagI	CGGCCG	1 cut(s)	88
Eam1104I	CTCTTC	6 cut(s)	153, 195, 564, 773, 977, 983
EarI	CTCTTC	6 cut(s)	153, 195, 564, 773, 977, 983
EclXI	CGGCCG	1 cut(s)	88
Eco31I	GGTCTC	1 cut(s)	326
Eco52I	CGGCCG	1 cut(s)	88
Eco57I	CTGAAG	3 cut(s)	134, 911, 1110
EcoRII	CCWGG	1 cut(s)	445
EcoT22I	ATGCAT	1 cut(s)	312
FaeI	CATG	7 cut(s)	249, 277, 314, 377, 389, 696, 954
FatI	CATG	7 cut(s)	245, 273, 310, 373, 385, 692, 950
FauNDI	CATATG	1 cut(s)	765
Fnu4HI	GCNGC	7 cut(s)	69, 91, 111, 390, 619, 667, 731
FokI	GGATG	5 cut(s)	446, 533, 800, 893, 1133
Fsp4HI	GCNGC	7 cut(s)	69, 91, 111, 390, 619, 667, 731
FspBI	CTAG	1 cut(s)	42
GlaI	GCGC	2 cut(s)	236, 748
GluI	GCNGC	7 cut(s)	69, 91, 111, 390, 619, 667, 731
GsaI	CCCAGC	1 cut(s)	947
GsuI	CTGGAG	2 cut(s)	261, 615
HaeIII	GGCC	5 cut(s)	55, 90, 113, 342, 796
HapII	CCGG	2 cut(s)	65, 107
HgaI	GACGC	2 cut(s)	156, 673
HhaI	GCGC	2 cut(s)	237, 749
Hin1I	GRCGYC	2 cut(s)	167, 174
Hin1II	CATG	7 cut(s)	249, 277, 314, 377, 389, 696, 954
Hin6I	GCGC	2 cut(s)	235, 747
HinP1I	GCGC	2 cut(s)	235, 747
HindIII	AAGCTT	1 cut(s)	1111
HinfI	GANTC	3 cut(s)	127, 212, 892
HpaII	CCGG	2 cut(s)	65, 107
HphI	GGTGA	1 cut(s)	461
Hpy166II	GTNNAC	1 cut(s)	298
Hpy188I	TCNGA	3 cut(s)	60, 153, 172
Hpy188III	TCNNGA	5 cut(s)	240, 325, 503, 929, 1065
Hpy8I	GTNNAC	1 cut(s)	298
Hpy99I	CGWCG	4 cut(s)	98, 101, 689, 921
HpyAV	CCTTC	5 cut(s)	157, 361, 564, 764, 1085
HpyCH4III	ACNGT	3 cut(s)	181, 602, 826
HpyCH4IV	ACGT	1 cut(s)	174
HpyF10VI	GCNNNNNNNGC	6 cut(s)	90, 99, 398, 530, 554, 931
HpyF3I	CTNAG	1 cut(s)	800
HpySE526I	ACGT	1 cut(s)	174
Hsp92I	GRCGYC	2 cut(s)	167, 174
Hsp92II	CATG	7 cut(s)	249, 277, 314, 377, 389, 696, 954
HspAI	GCGC	2 cut(s)	235, 747
KpnI	GGTACC	1 cut(s)	543
Kzo9I	GATC	4 cut(s)	649, 675, 701, 873
LguI	GCTCTTC	2 cut(s)	564, 773
LmnI	GCTCC	4 cut(s)	21, 242, 931, 1077
Lsp1109I	GCAGC	2 cut(s)	678, 742
LweI	GCATC	1 cut(s)	511
MaeI	CTAG	1 cut(s)	42
MaeII	ACGT	1 cut(s)	174
MaeIII	GTNAC	2 cut(s)	175, 739
MalI	GATC	4 cut(s)	651, 677, 703, 875
MboI	GATC	4 cut(s)	649, 675, 701, 873
MfeI	CAATTG	2 cut(s)	228, 633
MflI	RGATCY	1 cut(s)	873
MhlI	GDGCHC	1 cut(s)	936
MluCI	AATT	6 cut(s)	228, 301, 328, 409, 633, 1045
MluI	ACGCGT	1 cut(s)	682
MlyI	GAGTC	3 cut(s)	121, 221, 901
MmeI	TCCRAC	2 cut(s)	547, 1051
Mph1103I	ATGCAT	1 cut(s)	312
MseI	TTAA	3 cut(s)	723, 735, 819
MslI	CAYNNNNRTG	1 cut(s)	315
MspA1I	CMGCKG	1 cut(s)	392
MspI	CCGG	2 cut(s)	65, 107
MspR9I	CCNGG	2 cut(s)	65, 447
MunI	CAATTG	2 cut(s)	228, 633
MvaI	CCWGG	1 cut(s)	447
MvnI	CGCG	3 cut(s)	93, 684, 747
MwoI	GCNNNNNNNGC	6 cut(s)	90, 99, 398, 530, 554, 931
NciI	CCSGG	1 cut(s)	65
NdeI	CATATG	1 cut(s)	765
NdeII	GATC	4 cut(s)	649, 675, 701, 873
NlaIII	CATG	7 cut(s)	249, 277, 314, 377, 389, 696, 954
NlaIV	GGNNCC	3 cut(s)	114, 343, 541
NmuCI	GTSAC	2 cut(s)	175, 739
NsiI	ATGCAT	1 cut(s)	312
NspI	RCATGY	3 cut(s)	389, 696, 954
PaeI	GCATGC	1 cut(s)	389
PciI	ACATGT	1 cut(s)	950
PciSI	GCTCTTC	2 cut(s)	564, 773
PcsI	WCGNNNNNNNCGW	1 cut(s)	93
PkrI	GCNGC	7 cut(s)	70, 92, 112, 391, 620, 668, 732
PleI	GAGTC	3 cut(s)	121, 220, 900
PpsI	GAGTC	3 cut(s)	121, 220, 900
PscI	ACATGT	1 cut(s)	950
PshAI	GACNNNNGTC	1 cut(s)	318
Psp6I	CCWGG	1 cut(s)	445
PspFI	CCCAGC	1 cut(s)	943
PspGI	CCWGG	1 cut(s)	445
PspN4I	GGNNCC	3 cut(s)	114, 343, 541
PspPI	GGNCC	3 cut(s)	112, 341, 794
PsuI	RGATCY	1 cut(s)	873
RsaI	GTAC	3 cut(s)	40, 74, 541
RsaNI	GTAC	3 cut(s)	39, 73, 540
RseI	CAYNNNNRTG	1 cut(s)	315
SapI	GCTCTTC	2 cut(s)	564, 773
SaqAI	TTAA	3 cut(s)	723, 735, 819
SatI	GCNGC	7 cut(s)	69, 91, 111, 390, 619, 667, 731
Sau3AI	GATC	4 cut(s)	649, 675, 701, 873
Sau96I	GGNCC	3 cut(s)	112, 341, 794
ScaI	AGTACT	1 cut(s)	40
SchI	GAGTC	3 cut(s)	121, 221, 901
ScrFI	CCNGG	2 cut(s)	65, 447
SduI	GDGCHC	1 cut(s)	936
SfaNI	GCATC	1 cut(s)	511
SmiMI	CAYNNNNRTG	1 cut(s)	315
SmlI	CTYRAG	2 cut(s)	323, 1063
SmoI	CTYRAG	2 cut(s)	323, 1063
SphI	GCATGC	1 cut(s)	389
Sse9I	AATT	6 cut(s)	228, 301, 328, 409, 633, 1045
SsiI	CCGC	6 cut(s)	68, 79, 91, 110, 390, 619
SspMI	CTAG	1 cut(s)	42
StyD4I	CCNGG	2 cut(s)	63, 445
TaaI	ACNGT	3 cut(s)	181, 602, 826
TaiI	ACGT	1 cut(s)	177
TaqI	TCGA	4 cut(s)	136, 215, 604, 687
TasI	AATT	6 cut(s)	228, 301, 328, 409, 633, 1045
TatI	WGTACW	1 cut(s)	38
TauI	GCSGC	5 cut(s)	71, 93, 113, 392, 621
Tru1I	TTAA	3 cut(s)	723, 735, 819
Tru9I	TTAA	3 cut(s)	723, 735, 819
TscAI	CASTG	8 cut(s)	340, 352, 499, 550, 615, 711, 808, 909
TseFI	GTSAC	2 cut(s)	175, 739
TseI	GCWGC	2 cut(s)	666, 730
Tsp45I	GTSAC	2 cut(s)	175, 739
TspDTI	ATGAA	4 cut(s)	211, 412, 450, 791
TspGWI	ACGGA	1 cut(s)	851
TspRI	CASTG	8 cut(s)	340, 352, 499, 550, 615, 711, 808, 909
XapI	RAATTY	1 cut(s)	328
XceI	RCATGY	3 cut(s)	389, 696, 954
XspI	CTAG	1 cut(s)	42
ZraI	GACGTC	1 cut(s)	175
ZrmI	AGTACT	1 cut(s)	40
Zsp2I	ATGCAT	1 cut(s)	312

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.