RLG00000010329

Belongs to the glycosyl hydrolase 17 family

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr3
Physical Location & Seq
Reverse (-)
711126 .. 713873
2748 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000010329

Sequence Viewer

Length: 1566 bp
ATGGGGTCCTTTAGAGGCTCTGTTGTGGCTTTACTTTGCTTCAATGTTTTGGTGGGTTTTGTGTTTGGGATTGGAGTCAACTGGGGAACTCAAGATACACATGCTCTCCCTTCGGCTTCGGTTGTGAAGATGCTCAAGGATAATGGGATTCAGAAGGTTAAGCTTTTCGACGCAGATTATAACATCTTGAATGCTCTGCGCAAGTCTGGGCTTCAGGTCATGGTGGGAATACCCAATGAGATGCTTTATGGTTTGGCTAATAGTGTGGCTGCAGCTGAGAATTGGGTCTCCAAGAATATCTCCTCACATGTCTCCAATGGAGTAGATATTAGGTATGCTGCAGTGGGCAATGAACCGCTCTTGTCAACATTCAATGGAAGCTTTCTTACAACAATATTTCCTGCCCTGCAGAATATCCAGTCGGCTCTTATAAAAGCTGGTTTGAGCAATCAGGTTAAGGTCACTATTCCCCTCAACGCTGACGTCTATGACAGTGGTACTTCAACTAAACCTTCTGATGGTGACTTCCGGGCAGATACAAAGGACCTCATGGTGAACATTGTCAAGTTCTTGAGCGACAATGGTGCTCCATTCACTGTCAATATCTATCCCTTCATAAGTCTCTACAATGATGCCAGTTTCCCTGCAGACTATGCCTTCTTTGACGGCTACTCAAGTCCCATTGATGACAATGGGAAAATCTATCAGAATGTGTTTGATGCAAACCATGATACACTAGTGTGGTCATTACAAAAGAATGGATTCAATAACTTGTCCATAATCGTTGGAGAGATTGGTTGGCCTACTGATGGGGACCGGAATGCAAATTTGCAGTATGCACAGCGGTTCAACCAGGGCTTCATGACCCGGATCAAGAACAATGTAGGCACTCCAATGAGACCTGGCCCGGTGGATGCTTACTTATTCAGCCTTGTTGATGAAGATGCCAAGAGCATTCAGCCAGGTAACTTCGAACGCCATTGGGGGTTGTTTTACTTTGATGGAACACCCAAGTATCAGCTCAGTTTGGGCACTGCAAATGCTTTAGTAGGAGCAAGTGGTGTAAAATATCTGGCTAAGAAATGGTGCATTCTGTCACCATCAGCTAATCTTGATGATCCCCAAGTTCCTCTAAGCGTGAGCTACGCTTGTGAACGTGCTGATTGCACAAGTCTTGGATATGAGACCTCGTGTGGAAACTTAGACATTAAAGGAAACATTTCGTATGCGTTTAACAGTTACTATCAGGTCCATGATCAGCTGGACACTGCCTGCAAGTTTCCAAATCTATCAACTGTCACCACCTCCGATCCATCAACTGGAGACTGCAAATTTAGGATCATGATTGAAGCTGACTATAGTTCAAGTAGTGTGAACGGCAGAGCTGGGGCTCTGGGAAAGCCTCTTTGTTCGATTTTGTTTGTGTTGCTGTTTACATTTATATTGCACGAGTCTTGGTTTAAGGACTTCAACTACAAATCTGCTGTTCTTCAGAACAATTTTGTGGATACATCGGTTAAGATAAATAACCACCTGGGTGTGGCTGTAAGTTCCCAAACCAGTTGA

Protein Analysis

522

Amino Acids

56.87

Weight (kDa)

5.41

Isoelectric Point (pI)

26.94

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glyco_hydro_17 PF00332 24 - 342 9.5e-65 Glycosyl hydrolases family 17
X8 PF07983 361 - 430 3e-13 X8 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0012549)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 180, 431
AatII GACGTC 1 cut(s) 486
Acc16I TGCGCA 1 cut(s) 200
AccB7I CCANNNNNTGG 1 cut(s) 1319
AccBSI CCGCTC 1 cut(s) 358
AciI CCGC 2 cut(s) 356, 844
AclWI GGATC 4 cut(s) 878, 1112, 1304, 1346
AcsI RAATTY 2 cut(s) 826, 1331
AcuI CTGAAG 2 cut(s) 197, 1475
AcyI GRCGYC 1 cut(s) 483
AfaI GTAC 1 cut(s) 499
AfiI CCNNNNNNNGG 4 cut(s) 518, 809, 1319, 1540
AflIII ACRYGT 1 cut(s) 307
AgsI TTSAA 9 cut(s) 43, 190, 373, 504, 766, 850, 1349, 1365, 1471
AhlI ACTAGT 1 cut(s) 736
AjnI CCWGG 4 cut(s) 852, 901, 961, 1533
AleI CACNNNNGTG 2 cut(s) 739, 1536
Alw21I GWGCWC 1 cut(s) 589
Alw26I GTCTC 6 cut(s) 292, 316, 626, 892, 1178, 1317
AlwI GGATC 4 cut(s) 878, 1112, 1304, 1346
AoxI GGCC 2 cut(s) 800, 904
ApeKI GCWGC 3 cut(s) 269, 272, 338
ApoI RAATTY 2 cut(s) 826, 1331
Asp700I GAANNNNTTC 2 cut(s) 761, 1219
AspLEI GCGC 1 cut(s) 201
AspS9I GGNCC 5 cut(s) 6, 544, 814, 905, 1249
AsuC2I CCSGG 3 cut(s) 530, 868, 908
AsuHPI GGTGA 4 cut(s) 533, 565, 1089, 1291
AsuII TTCGAA 1 cut(s) 972
AvaII GGWCC 4 cut(s) 6, 544, 814, 1249
BaeGI GKGCMC 1 cut(s) 1034
BaeI ACNNNNGTAYC 6 cut(s) 723, 756, 998, 1031, 1500, 1533
BanII GRGCYC 1 cut(s) 1393
BarI GAAGNNNNNNTAC 2 cut(s) 370, 402
BauI CACGAG 2 cut(s) 1189, 1448
Bbv12I GWGCWC 1 cut(s) 589
BbvI GCAGC 3 cut(s) 256, 284, 325
BccI CCATC 5 cut(s) 512, 803, 995, 1108, 1321
BceAI ACGGC 2 cut(s) 682, 1393
BcgI CGANNNNNNTGC 2 cut(s) 566, 600
BciT130I CCWGG 4 cut(s) 854, 903, 963, 1535
BciVI GTATCC 1 cut(s) 1501
BclI TGATCA 1 cut(s) 1255
BcnI CCSGG 3 cut(s) 530, 868, 908
BcoDI GTCTC 6 cut(s) 292, 316, 626, 892, 1178, 1317
BcuI ACTAGT 1 cut(s) 736
BfaI CTAG 1 cut(s) 737
BfmI CTRYAG 5 cut(s) 270, 339, 407, 645, 1357
BfuI GTATCC 1 cut(s) 1501
BisI GCNGC 3 cut(s) 270, 273, 339
BlsI GCNGC 3 cut(s) 271, 274, 340
Bme1390I CCNGG 7 cut(s) 530, 854, 868, 903, 908, 963, 1535
Bme18I GGWCC 4 cut(s) 6, 544, 814, 1249
BmgT120I GGNCC 5 cut(s) 6, 544, 814, 905, 1249
BmiI GGNNCC 2 cut(s) 7, 815
BmrFI CCNGG 7 cut(s) 530, 854, 868, 903, 908, 963, 1535
BmrI ACTGGG 1 cut(s) 91
BmsI GCATC 6 cut(s) 120, 231, 622, 709, 904, 934
BmuI ACTGGG 1 cut(s) 91
BpmI CTGGAG 1 cut(s) 1341
Bpu14I TTCGAA 1 cut(s) 972
BpuEI CTTGAG 4 cut(s) 75, 119, 592, 658
BpuMI CCSGG 3 cut(s) 530, 868, 908
BsaHI GRCGYC 1 cut(s) 483
BsaI GGTCTC 3 cut(s) 292, 892, 1178
BsaJI CCNNGG 2 cut(s) 853, 1534
BsaWI WCCGGW 1 cut(s) 816
BsaXI ACNNNNNCTCC 2 cut(s) 90, 120
Bsc4I CCNNNNNNNGG 4 cut(s) 518, 809, 1319, 1540
Bse1I ACTGG 5 cut(s) 86, 418, 636, 1324, 1560
Bse3DI GCAATG 1 cut(s) 355
BseBI CCWGG 4 cut(s) 854, 903, 963, 1535
BseDI CCNNGG 2 cut(s) 853, 1534
BseGI GGATG 1 cut(s) 919
BseLI CCNNNNNNNGG 4 cut(s) 518, 809, 1319, 1540
BseMI GCAATG 1 cut(s) 355
BseMII CTCAG 2 cut(s) 267, 1036
BseNI ACTGG 5 cut(s) 86, 418, 636, 1324, 1560
BseRI GAGGAG 1 cut(s) 292
BseSI GKGCMC 1 cut(s) 1034
BseXI GCAGC 3 cut(s) 256, 284, 325
BseYI CCCAGC 1 cut(s) 1385
BshFI GGCC 2 cut(s) 802, 906
BsiHKAI GWGCWC 1 cut(s) 589
BsiSI CCGG 4 cut(s) 529, 817, 868, 908
BslFI GGGAC 2 cut(s) 663, 827
BslI CCNNNNNNNGG 4 cut(s) 518, 809, 1319, 1540
BsmAI GTCTC 6 cut(s) 292, 316, 626, 892, 1178, 1317
BsmFI GGGAC 2 cut(s) 663, 827
BsmI GAATGC 4 cut(s) 196, 826, 954, 1089
BsnI GGCC 2 cut(s) 802, 906
Bso31I GGTCTC 3 cut(s) 292, 892, 1178
Bsp119I TTCGAA 1 cut(s) 972
Bsp1286I GDGCHC 3 cut(s) 589, 1034, 1393
Bsp143I GATC 5 cut(s) 870, 1117, 1255, 1309, 1338
BspACI CCGC 2 cut(s) 356, 844
BspANI GGCC 2 cut(s) 802, 906
BspCNI CTCAG 2 cut(s) 268, 1035
BspHI TCATGA 2 cut(s) 861, 1341
BspLI GGNNCC 2 cut(s) 7, 815
BspMAI CTGCAG 4 cut(s) 274, 343, 411, 649
BspPI GGATC 4 cut(s) 878, 1112, 1304, 1346
BspT104I TTCGAA 1 cut(s) 972
BspTNI GGTCTC 3 cut(s) 292, 892, 1178
BsrBI CCGCTC 1 cut(s) 358
BsrDI GCAATG 1 cut(s) 355
BsrI ACTGG 5 cut(s) 86, 418, 636, 1324, 1560
BssECI CCNNGG 2 cut(s) 853, 1534
BssMI GATC 5 cut(s) 870, 1117, 1255, 1309, 1338
BssNI GRCGYC 1 cut(s) 483
BssSI CACGAG 2 cut(s) 1189, 1448
Bst2BI CACGAG 2 cut(s) 1189, 1448
Bst2UI CCWGG 4 cut(s) 854, 903, 963, 1535
Bst4CI ACNGT 4 cut(s) 494, 598, 1238, 1297
BstACI GRCGYC 1 cut(s) 483
BstAPI GCANNNNNTGC 1 cut(s) 653
BstBI TTCGAA 1 cut(s) 972
BstC8I GCNNGC 1 cut(s) 1273
BstDEI CTNAG 5 cut(s) 276, 1022, 1077, 1133, 1201
BstF5I GGATG 1 cut(s) 919
BstHHI GCGC 1 cut(s) 201
BstKTI GATC 5 cut(s) 873, 1120, 1258, 1312, 1341
BstMAI GTCTC 6 cut(s) 292, 316, 626, 892, 1178, 1317
BstMBI GATC 5 cut(s) 870, 1117, 1255, 1309, 1338
BstMWI GCNNNNNNNGC 1 cut(s) 653
BstNI CCWGG 4 cut(s) 854, 903, 963, 1535
BstNSI RCATGY 2 cut(s) 104, 311
BstSCI CCNGG 7 cut(s) 528, 852, 866, 901, 906, 961, 1533
BstSFI CTRYAG 5 cut(s) 270, 339, 407, 645, 1357
BstSLI GKGCMC 1 cut(s) 1034
BstV1I GCAGC 3 cut(s) 256, 284, 325
BsuI GTATCC 1 cut(s) 1501
BsuRI GGCC 2 cut(s) 802, 906
BtsCI GGATG 1 cut(s) 919
BtsI GCAGTG 3 cut(s) 348, 1032, 1266
BtsIMutI CAGTG 5 cut(s) 348, 499, 594, 1032, 1266
Cac8I GCNNGC 1 cut(s) 1273
CciI TCATGA 2 cut(s) 861, 1341
CfoI GCGC 1 cut(s) 201
Cfr13I GGNCC 5 cut(s) 6, 544, 814, 905, 1249
CseI GACGC 1 cut(s) 179
Csp6I GTAC 1 cut(s) 498
CviAII CATG 8 cut(s) 101, 220, 308, 550, 728, 862, 1253, 1342
CviQI GTAC 1 cut(s) 498
DdeI CTNAG 5 cut(s) 276, 1022, 1077, 1133, 1201
DpnI GATC 5 cut(s) 872, 1119, 1257, 1311, 1340
DpnII GATC 5 cut(s) 870, 1117, 1255, 1309, 1338
Eco24I GRGCYC 1 cut(s) 1393
Eco31I GGTCTC 3 cut(s) 292, 892, 1178
Eco47I GGWCC 4 cut(s) 6, 544, 814, 1249
Eco57I CTGAAG 2 cut(s) 197, 1475
EcoO109I RGGNCCY 2 cut(s) 6, 544
EcoRII CCWGG 4 cut(s) 852, 901, 961, 1533
EcoT38I GRGCYC 1 cut(s) 1393
FaeI CATG 8 cut(s) 104, 223, 311, 553, 731, 865, 1256, 1345
FaqI GGGAC 2 cut(s) 663, 827
FatI CATG 8 cut(s) 100, 219, 307, 549, 727, 861, 1252, 1341
FbaI TGATCA 1 cut(s) 1255
Fnu4HI GCNGC 3 cut(s) 270, 273, 339
FokI GGATG 1 cut(s) 926
FriOI GRGCYC 1 cut(s) 1393
Fsp4HI GCNGC 3 cut(s) 270, 273, 339
FspBI CTAG 1 cut(s) 737
FspI TGCGCA 1 cut(s) 200
GlaI GCGC 1 cut(s) 200
GluI GCNGC 3 cut(s) 270, 273, 339
GsaI CCCAGC 1 cut(s) 1389
GsuI CTGGAG 1 cut(s) 1341
HaeIII GGCC 2 cut(s) 802, 906
HapII CCGG 4 cut(s) 529, 817, 868, 908
HgaI GACGC 1 cut(s) 179
HhaI GCGC 1 cut(s) 201
Hin1I GRCGYC 1 cut(s) 483
Hin1II CATG 8 cut(s) 104, 223, 311, 553, 731, 865, 1256, 1345
Hin6I GCGC 1 cut(s) 199
HinP1I GCGC 1 cut(s) 199
HincII GTYRAC 2 cut(s) 79, 366
HindII GTYRAC 2 cut(s) 79, 366
HindIII AAGCTT 2 cut(s) 161, 379
HinfI GANTC 4 cut(s) 75, 148, 762, 1451
HpaII CCGG 4 cut(s) 529, 817, 868, 908
HphI GGTGA 4 cut(s) 533, 565, 1089, 1291
Hpy166II GTNNAC 6 cut(s) 79, 366, 556, 1154, 1375, 1434
Hpy188I TCNGA 5 cut(s) 153, 517, 708, 1309, 1494
Hpy188III TCNNGA 7 cut(s) 92, 187, 571, 862, 874, 1112, 1342
Hpy8I GTNNAC 6 cut(s) 79, 366, 556, 1154, 1375, 1434
Hpy99I CGWCG 1 cut(s) 173
HpyAV CCTTC 5 cut(s) 120, 148, 522, 622, 667
HpyCH4III ACNGT 4 cut(s) 494, 598, 1238, 1297
HpyCH4IV ACGT 2 cut(s) 483, 1156
HpyF10VI GCNNNNNNNGC 1 cut(s) 653
HpyF3I CTNAG 5 cut(s) 276, 1022, 1077, 1133, 1201
HpySE526I ACGT 2 cut(s) 483, 1156
Hsp92I GRCGYC 1 cut(s) 483
Hsp92II CATG 8 cut(s) 104, 223, 311, 553, 731, 865, 1256, 1345
HspAI GCGC 1 cut(s) 199
Ksp22I TGATCA 1 cut(s) 1255
Kzo9I GATC 5 cut(s) 870, 1117, 1255, 1309, 1338
LmnI GCTCC 2 cut(s) 592, 1052
Lsp1109I GCAGC 3 cut(s) 256, 284, 325
LweI GCATC 6 cut(s) 120, 231, 622, 709, 904, 934
MaeI CTAG 1 cut(s) 737
MaeII ACGT 2 cut(s) 483, 1156
MaeIII GTNAC 6 cut(s) 460, 521, 965, 1095, 1238, 1297
MalI GATC 5 cut(s) 872, 1119, 1257, 1311, 1340
MbiI CCGCTC 1 cut(s) 358
MboI GATC 5 cut(s) 870, 1117, 1255, 1309, 1338
MboII GAAGA 3 cut(s) 139, 953, 1481
MhlI GDGCHC 3 cut(s) 589, 1034, 1393
MluCI AATT 4 cut(s) 280, 826, 1331, 1498
MlyI GAGTC 2 cut(s) 84, 1460
MmeI TCCRAC 1 cut(s) 766
MnlI CCTC 8 cut(s) 8, 313, 482, 557, 1140, 1198, 1315, 1413
MroXI GAANNNNTTC 2 cut(s) 761, 1219
MseI TTAA 6 cut(s) 159, 456, 1209, 1233, 1461, 1518
MslI CAYNNNNRTG 3 cut(s) 739, 893, 1536
MspA1I CMGCKG 3 cut(s) 275, 844, 1261
MspI CCGG 4 cut(s) 529, 817, 868, 908
MspR9I CCNGG 7 cut(s) 530, 854, 868, 903, 908, 963, 1535
Mva1269I GAATGC 4 cut(s) 196, 826, 954, 1089
MvaI CCWGG 4 cut(s) 854, 903, 963, 1535
MwoI GCNNNNNNNGC 1 cut(s) 653
NciI CCSGG 3 cut(s) 530, 868, 908
NdeII GATC 5 cut(s) 870, 1117, 1255, 1309, 1338
NlaIII CATG 8 cut(s) 104, 223, 311, 553, 731, 865, 1256, 1345
NlaIV GGNNCC 2 cut(s) 7, 815
NmuCI GTSAC 4 cut(s) 460, 521, 1095, 1297
NsbI TGCGCA 1 cut(s) 200
NspI RCATGY 2 cut(s) 104, 311
NspV TTCGAA 1 cut(s) 972
OliI CACNNNNGTG 2 cut(s) 739, 1536
PagI TCATGA 2 cut(s) 861, 1341
PciI ACATGT 1 cut(s) 307
PctI GAATGC 4 cut(s) 196, 826, 954, 1089
PdmI GAANNNNTTC 2 cut(s) 761, 1219
PfeI GAWTC 2 cut(s) 148, 762
PflMI CCANNNNNTGG 1 cut(s) 1319
PkrI GCNGC 3 cut(s) 271, 274, 340
PleI GAGTC 2 cut(s) 83, 1459
PpsI GAGTC 2 cut(s) 83, 1459
PpuMI RGGWCCY 2 cut(s) 6, 544
PscI ACATGT 1 cut(s) 307
PsiI TTATAA 2 cut(s) 180, 431
Psp5II RGGWCCY 2 cut(s) 6, 544
Psp6I CCWGG 4 cut(s) 852, 901, 961, 1533
PspFI CCCAGC 1 cut(s) 1385
PspGI CCWGG 4 cut(s) 852, 901, 961, 1533
PspN4I GGNNCC 2 cut(s) 7, 815
PspPI GGNCC 5 cut(s) 6, 544, 814, 905, 1249
PspPPI RGGWCCY 2 cut(s) 6, 544
PsrI GAACNNNNNNTAC 2 cut(s) 79, 111
PstI CTGCAG 4 cut(s) 274, 343, 411, 649
PvuII CAGCTG 2 cut(s) 275, 1261
RsaI GTAC 1 cut(s) 499
RsaNI GTAC 1 cut(s) 498
RseI CAYNNNNRTG 3 cut(s) 739, 893, 1536
SaqAI TTAA 6 cut(s) 159, 456, 1209, 1233, 1461, 1518
SatI GCNGC 3 cut(s) 270, 273, 339
Sau3AI GATC 5 cut(s) 870, 1117, 1255, 1309, 1338
Sau96I GGNCC 5 cut(s) 6, 544, 814, 905, 1249
SchI GAGTC 2 cut(s) 84, 1460
ScrFI CCNGG 7 cut(s) 530, 854, 868, 903, 908, 963, 1535
SduI GDGCHC 3 cut(s) 589, 1034, 1393
SfaNI GCATC 6 cut(s) 120, 231, 622, 709, 904, 934
SfcI CTRYAG 5 cut(s) 270, 339, 407, 645, 1357
SfuI TTCGAA 1 cut(s) 972
SinI GGWCC 4 cut(s) 6, 544, 814, 1249
SmiMI CAYNNNNRTG 3 cut(s) 739, 893, 1536
SmlI CTYRAG 4 cut(s) 90, 134, 571, 673
SmoI CTYRAG 4 cut(s) 90, 134, 571, 673
SpeI ACTAGT 1 cut(s) 736
Sse9I AATT 4 cut(s) 280, 826, 1331, 1498
SsiI CCGC 2 cut(s) 356, 844
SspI AATATT 1 cut(s) 396
SspMI CTAG 1 cut(s) 737
StyD4I CCNGG 7 cut(s) 528, 852, 866, 901, 906, 961, 1533
TaaI ACNGT 4 cut(s) 494, 598, 1238, 1297
TaiI ACGT 2 cut(s) 486, 1159
TaqI TCGA 3 cut(s) 168, 972, 1412
TasI AATT 4 cut(s) 280, 826, 1331, 1498
TfiI GAWTC 2 cut(s) 148, 762
Tru1I TTAA 6 cut(s) 159, 456, 1209, 1233, 1461, 1518
Tru9I TTAA 6 cut(s) 159, 456, 1209, 1233, 1461, 1518
TscAI CASTG 5 cut(s) 348, 499, 601, 1039, 1273
TseFI GTSAC 4 cut(s) 460, 521, 1095, 1297
TseI GCWGC 3 cut(s) 269, 272, 338
Tsp45I GTSAC 4 cut(s) 460, 521, 1095, 1297
TspDTI ATGAA 4 cut(s) 366, 604, 850, 954
TspRI CASTG 5 cut(s) 348, 499, 601, 1039, 1273
Van91I CCANNNNNTGG 1 cut(s) 1319
VpaK11BI GGWCC 4 cut(s) 6, 544, 814, 1249
XapI RAATTY 2 cut(s) 826, 1331
XceI RCATGY 2 cut(s) 104, 311
XmnI GAANNNNTTC 2 cut(s) 761, 1219
XspI CTAG 1 cut(s) 737
ZraI GACGTC 1 cut(s) 484
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.