Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0012549

Physical Location & Seq

Genomic Coordinates Forward (+)

38689182 .. 38692719

Gene Structure 3538 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G463500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1473 bp

ATGGGGTTGTTGAAAGCTGTGGGCTTTAGAGGCCTTACTGTTGCCTTGTTCTTCAATCTGCTTGTGGGTTTAGCGGTTGGCATTGGAGTGAACTGGGGAACTCAGTTAACACACCCTCTCCCACCAGCAACAGTGGTGAAGATGTTGAAGGACAACGGGATTCAAAAGGTTAAGCTTTTCGATGCCGATTCTTCGATATTGAATGCTCTGAGCAAGTCTGGGATTCAGGTAATGGTCGGAATTCCCAATGAAATGCTCTATGCTTTGGCTAATAGTGTGCAAGCAGCTGAGAATTGGGTTTCCAAGAATGTCTCCTCACATGTCTCCAATGGTGTAGATATTAGGTATGCTGCAGTGGGAAATGAACCATTGTTGTCAACGTACAATGGAACCTTTCTTCCAACAATATTTCCTGCCCTTCAGAATGTCCAGTCAGCTCTCATAAAAGCTGGTGTGAGCAATCAGGTTAAGGTCACTATTCCCCTCAACGCCGATGTCTATGACAGCAGTGGCTCGGATATGCCTTCTAATGGCGACTTCCGACCAGACACCAAGGATCTCATGGTGGAAATCGTCAAGTTCTTGAGTGACAACGGCGCTGCATTCACAGTCAATATCTATCCCTTCATAAGCCTCTACAATGATGCCAACTTCCCTGCTGACTATGCCTTTTTCAATGGATACTCAAGTTCCATTAATGACAACGGAAAAATCTACAACAACGTATTTGATGCAAACCATGACACCCTTGTATGGGCCTTACAGAAAAATGGATTTGGAAACTTGTCCATAATAGTAGGAGAGATCGGTTGGCCTACAGATGGGGACAGAAATGCAAACTTACAGTATGCTCAAAGGTTCAACCAGGGGTTTATGTCCCATATCAAGAACAATGCAGGCACCCCAATGAGACCTGGCCCTGTAGATGCCTACTTATTTAGCCTTGTTGATGAAGATGCCAAGAGCATTCAGCCAGGTAATTTTGAACGCCATTGGGGGCTATTTTTCCTTGATGGAACACCTAAATATCAGCTCAGTCTAGGCACGACAAGCTCGAATGGATTAGTAGCAGCAAGCAGTGTACAATATCTGGACAAGAAATGGTGTGTTATGTCACCATCGGCGAGTCTTGACGATCCACAAGTGGCACTAAGTGTGAGCTATGCTTGTGCAAATGCTGACTGCACCAGTCTTGGATATGGAACTTCATGTGGAAATTTGGATATTCGTGGAAACATTTCCTATGCATTTAACAGTTACTATCAGATAAATAATCAACTGGACACTGCCTGTAAGTTTCCAAACCTTTCGGTCGTCACCACGAGCGATCCATCATCTGGAGACTGCAAGTTTAGGATTATGATCCGATCATCTTCTTCATCTGCTTTGAATGCCGGAGCTGGTTCTGTTGAAAAGCCTAGTTGTTTAATTCTGTTTGTGTTAGTGTCCGTGTTCGTCTTTACAATTCTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001871 GO:0003674 GO:0003824 GO:0004553 GO:0005488 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005886 GO:0005911 GO:0009505 GO:0009506 GO:0016020 GO:0016787 GO:0016798 GO:0030054 GO:0030246 GO:0030247 GO:0030312 GO:0031224 GO:0031225 GO:0031226 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044425 GO:0044444 GO:0044459 GO:0044464 GO:0046658 GO:0055044 GO:0071944

KEGG Pathways

Metabolic & Signaling

ko00500 map00500

Pfam Domains

Protein Families

Glyco_hydro_17 X8

Protein Analysis

491

Amino Acids

52.77

Weight (kDa)

5.26

Isoelectric Point (pI)

28.25

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012549)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G31140
fragaria_vesca	FvH4_2g30580
malus_domestica	MD08G1132400.v1.1 MD15G1113000.v1.1
prunus_persica	Prupe.1G463500_v2.0.a1
pyrus_communis	pycom08g11080 pycom15g10150
rosa_chinensis	RchiOBHm_Chr6g0312431
rosa_laevigata	RLG00000010329
rosa_multiflora	Rmu_sc0008363.1_g000019
rosa_roxburghii	Rroxscaffold_7G00156800
rosa_rugosa	Rorug06G0395600 Rorug06G0395700 Rorug06G0395700
rosa_samantha	Rh6AG513100 Rh6BG523900 Rh6CG529400 Rh6DG515200
rosa_wichuraiana	Rw6G044600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	899
AccB7I	CCANNNNNTGG	1 cut(s)	1337
AciI	CCGC	1 cut(s)	74
AclWI	GGATC	4 cut(s)	564, 1130, 1322, 1357
AcsI	RAATTY	2 cut(s)	240, 1216
AcuI	CTGAAG	1 cut(s)	404
AdeI	CACNNNGTG	1 cut(s)	1154
AfaI	GTAC	2 cut(s)	383, 1083
AfiI	CCNNNNNNNGG	5 cut(s)	530, 753, 754, 821, 1337
AflIII	ACRYGT	1 cut(s)	319
AjnI	CCWGG	3 cut(s)	864, 913, 973
AloI	GAACNNNNNNTCC	2 cut(s)	382, 414
AluBI	AGCT	9 cut(s)	17, 175, 287, 437, 449, 1033, 1053, 1161, 1400
AluI	AGCT	9 cut(s)	17, 175, 287, 437, 449, 1033, 1053, 1161, 1400
Alw26I	GTCTC	4 cut(s)	316, 328, 904, 1335
AlwI	GGATC	4 cut(s)	564, 1130, 1322, 1357
AoxI	GGCC	4 cut(s)	31, 756, 812, 916
ApeKI	GCWGC	4 cut(s)	284, 350, 599, 1070
ApoI	RAATTY	2 cut(s)	240, 1216
AseI	ATTAAT	1 cut(s)	696
Asp700I	GAANNNNTTC	1 cut(s)	1237
AspLEI	GCGC	1 cut(s)	599
AspS9I	GGNCC	2 cut(s)	756, 917
AsuHPI	GGTGA	3 cut(s)	148, 1107, 1309
BaeI	ACNNNNGTAYC	2 cut(s)	673, 706
BanI	GGYRCC	1 cut(s)	899
BauI	CACGAG	1 cut(s)	1321
BbvI	GCAGC	4 cut(s)	296, 337, 586, 1082
BccI	CCATC	4 cut(s)	815, 1007, 1126, 1339
BceAI	ACGGC	1 cut(s)	610
BciT130I	CCWGG	3 cut(s)	866, 915, 975
BciVI	GTATCC	1 cut(s)	674
BcoDI	GTCTC	4 cut(s)	316, 328, 904, 1335
BfaI	CTAG	2 cut(s)	1040, 1419
BfmI	CTRYAG	3 cut(s)	351, 816, 921
BfoI	RGCGCY	1 cut(s)	600
BfuI	GTATCC	1 cut(s)	674
BisI	GCNGC	4 cut(s)	285, 351, 600, 1071
BlsI	GCNGC	4 cut(s)	286, 352, 601, 1072
Bme1390I	CCNGG	3 cut(s)	866, 915, 975
BmgT120I	GGNCC	2 cut(s)	756, 917
BmiI	GGNNCC	2 cut(s)	391, 901
BmrFI	CCNGG	3 cut(s)	866, 915, 975
BmrI	ACTGGG	1 cut(s)	103
BmsI	GCATC	5 cut(s)	172, 634, 721, 916, 946
BmuI	ACTGGG	1 cut(s)	103
BpmI	CTGGAG	1 cut(s)	1359
BpuEI	CTTGAG	2 cut(s)	604, 670
BsaBI	GATNNNNATC	1 cut(s)	1361
BsaI	GGTCTC	1 cut(s)	904
BsaJI	CCNNGG	2 cut(s)	552, 865
BsaXI	ACNNNNNCTCC	2 cut(s)	102, 132
Bsc4I	CCNNNNNNNGG	5 cut(s)	530, 753, 754, 821, 1337
Bse1I	ACTGG	4 cut(s)	98, 430, 1188, 1284
Bse8I	GATNNNNATC	1 cut(s)	1361
BseBI	CCWGG	3 cut(s)	866, 915, 975
BseDI	CCNNGG	2 cut(s)	552, 865
BseJI	GATNNNNATC	1 cut(s)	1361
BseLI	CCNNNNNNNGG	5 cut(s)	530, 753, 754, 821, 1337
BseMII	CTCAG	4 cut(s)	116, 200, 279, 1048
BseNI	ACTGG	4 cut(s)	98, 430, 1188, 1284
BseRI	GAGGAG	1 cut(s)	304
BseXI	GCAGC	4 cut(s)	296, 337, 586, 1082
BsgI	GTGCAG	1 cut(s)	1168
Bsh1285I	CGRYCG	1 cut(s)	1314
BshFI	GGCC	4 cut(s)	33, 758, 814, 918
BshNI	GGYRCC	1 cut(s)	899
BsiEI	CGRYCG	1 cut(s)	1314
BsiSI	CCGG	1 cut(s)	1395
BslFI	GGGAC	2 cut(s)	839, 862
BslI	CCNNNNNNNGG	5 cut(s)	530, 753, 754, 821, 1337
BsmAI	GTCTC	4 cut(s)	316, 328, 904, 1335
BsmFI	GGGAC	2 cut(s)	839, 862
BsmI	GAATGC	4 cut(s)	208, 602, 966, 1396
BsnI	GGCC	4 cut(s)	33, 758, 814, 918
Bso31I	GGTCTC	1 cut(s)	904
Bsp1407I	TGTACA	1 cut(s)	1081
Bsp143I	GATC	6 cut(s)	556, 804, 1135, 1327, 1362, 1367
BspACI	CCGC	1 cut(s)	74
BspANI	GGCC	4 cut(s)	33, 758, 814, 918
BspCNI	CTCAG	4 cut(s)	115, 201, 280, 1047
BspLI	GGNNCC	2 cut(s)	391, 901
BspMAI	CTGCAG	1 cut(s)	355
BspPI	GGATC	4 cut(s)	564, 1130, 1322, 1357
BspT107I	GGYRCC	1 cut(s)	899
BspTNI	GGTCTC	1 cut(s)	904
BsrGI	TGTACA	1 cut(s)	1081
BsrI	ACTGG	4 cut(s)	98, 430, 1188, 1284
BssECI	CCNNGG	2 cut(s)	552, 865
BssMI	GATC	6 cut(s)	556, 804, 1135, 1327, 1362, 1367
BssSI	CACGAG	1 cut(s)	1321
BssT1I	CCWWGG	1 cut(s)	552
Bst2BI	CACGAG	1 cut(s)	1321
Bst2UI	CCWGG	3 cut(s)	866, 915, 975
Bst4CI	ACNGT	5 cut(s)	40, 133, 610, 846, 1256
BstAUI	TGTACA	1 cut(s)	1081
BstC8I	GCNNGC	3 cut(s)	282, 898, 1075
BstDEI	CTNAG	5 cut(s)	102, 209, 288, 1034, 1151
BstH2I	RGCGCY	1 cut(s)	600
BstHHI	GCGC	1 cut(s)	599
BstKTI	GATC	6 cut(s)	559, 807, 1138, 1330, 1365, 1370
BstMAI	GTCTC	4 cut(s)	316, 328, 904, 1335
BstMBI	GATC	6 cut(s)	556, 804, 1135, 1327, 1362, 1367
BstMCI	CGRYCG	1 cut(s)	1314
BstMWI	GCNNNNNNNGC	4 cut(s)	30, 665, 1050, 1391
BstNI	CCWGG	3 cut(s)	866, 915, 975
BstNSI	RCATGY	1 cut(s)	323
BstSCI	CCNGG	3 cut(s)	864, 913, 973
BstSFI	CTRYAG	3 cut(s)	351, 816, 921
BstV1I	GCAGC	4 cut(s)	296, 337, 586, 1082
BstX2I	RGATCY	1 cut(s)	556
BstYI	RGATCY	1 cut(s)	556
BsuI	GTATCC	1 cut(s)	674
BsuRI	GGCC	4 cut(s)	33, 758, 814, 918
BtsI	GCAGTG	4 cut(s)	360, 514, 1084, 1284
BtsIMutI	CAGTG	5 cut(s)	138, 360, 514, 1084, 1284
Cac8I	GCNNGC	3 cut(s)	282, 898, 1075
CfoI	GCGC	1 cut(s)	599
Cfr13I	GGNCC	2 cut(s)	756, 917
Csp6I	GTAC	2 cut(s)	382, 1082
CviAII	CATG	4 cut(s)	320, 562, 740, 1209
CviQI	GTAC	2 cut(s)	382, 1082
DdeI	CTNAG	5 cut(s)	102, 209, 288, 1034, 1151
DpnI	GATC	6 cut(s)	558, 806, 1137, 1329, 1364, 1369
DpnII	GATC	6 cut(s)	556, 804, 1135, 1327, 1362, 1367
DraIII	CACNNNGTG	1 cut(s)	1154
Eco130I	CCWWGG	1 cut(s)	552
Eco147I	AGGCCT	1 cut(s)	33
Eco31I	GGTCTC	1 cut(s)	904
Eco57I	CTGAAG	1 cut(s)	404
EcoRI	GAATTC	1 cut(s)	240
EcoRII	CCWGG	3 cut(s)	864, 913, 973
EcoT14I	CCWWGG	1 cut(s)	552
EcoT22I	ATGCAT	1 cut(s)	1249
ErhI	CCWWGG	1 cut(s)	552
FaeI	CATG	4 cut(s)	323, 565, 743, 1212
FaqI	GGGAC	2 cut(s)	839, 862
FatI	CATG	4 cut(s)	319, 561, 739, 1208
Fnu4HI	GCNGC	4 cut(s)	285, 351, 600, 1071
Fsp4HI	GCNGC	4 cut(s)	285, 351, 600, 1071
FspBI	CTAG	2 cut(s)	1040, 1419
GlaI	GCGC	1 cut(s)	598
GluI	GCNGC	4 cut(s)	285, 351, 600, 1071
GsuI	CTGGAG	1 cut(s)	1359
HaeII	RGCGCY	1 cut(s)	600
HaeIII	GGCC	4 cut(s)	33, 758, 814, 918
HapII	CCGG	1 cut(s)	1395
HhaI	GCGC	1 cut(s)	599
Hin1II	CATG	4 cut(s)	323, 565, 743, 1212
Hin6I	GCGC	1 cut(s)	597
HinP1I	GCGC	1 cut(s)	597
HincII	GTYRAC	2 cut(s)	108, 378
HindII	GTYRAC	2 cut(s)	108, 378
HindIII	AAGCTT	1 cut(s)	173
HinfI	GANTC	4 cut(s)	160, 188, 223, 1126
HpaI	GTTAAC	1 cut(s)	108
HpaII	CCGG	1 cut(s)	1395
HphI	GGTGA	3 cut(s)	148, 1107, 1309
Hpy166II	GTNNAC	4 cut(s)	91, 108, 378, 1082
Hpy188I	TCNGA	7 cut(s)	210, 239, 423, 517, 542, 1266, 1367
Hpy188III	TCNNGA	5 cut(s)	583, 886, 1091, 1130, 1338
Hpy8I	GTNNAC	4 cut(s)	91, 108, 378, 1082
HpyAV	CCTTC	4 cut(s)	142, 428, 534, 634
HpyCH4III	ACNGT	5 cut(s)	40, 133, 610, 846, 1256
HpyCH4IV	ACGT	2 cut(s)	380, 723
HpyF10VI	GCNNNNNNNGC	4 cut(s)	30, 665, 1050, 1391
HpyF3I	CTNAG	5 cut(s)	102, 209, 288, 1034, 1151
HpySE526I	ACGT	2 cut(s)	380, 723
Hsp92II	CATG	4 cut(s)	323, 565, 743, 1212
HspAI	GCGC	1 cut(s)	597
KspAI	GTTAAC	1 cut(s)	108
Kzo9I	GATC	6 cut(s)	556, 804, 1135, 1327, 1362, 1367
LmnI	GCTCC	1 cut(s)	1397
Lsp1109I	GCAGC	4 cut(s)	296, 337, 586, 1082
LweI	GCATC	5 cut(s)	172, 634, 721, 916, 946
MaeI	CTAG	2 cut(s)	1040, 1419
MaeII	ACGT	2 cut(s)	380, 723
MaeIII	GTNAC	5 cut(s)	472, 587, 1113, 1256, 1315
MalI	GATC	6 cut(s)	558, 806, 1137, 1329, 1364, 1369
MboI	GATC	6 cut(s)	556, 804, 1135, 1327, 1362, 1367
MboII	GAAGA	7 cut(s)	43, 151, 183, 389, 965, 1365, 1368
MflI	RGATCY	1 cut(s)	556
MluCI	AATT	6 cut(s)	240, 292, 979, 1216, 1428, 1464
MlyI	GAGTC	1 cut(s)	1135
MmeI	TCCRAC	3 cut(s)	217, 425, 565
MnlI	CCTC	5 cut(s)	23, 126, 325, 494, 644
Mph1103I	ATGCAT	1 cut(s)	1249
MroXI	GAANNNNTTC	1 cut(s)	1237
MseI	TTAA	6 cut(s)	107, 171, 468, 696, 1251, 1427
MslI	CAYNNNNRTG	2 cut(s)	86, 905
MspA1I	CMGCKG	1 cut(s)	287
MspI	CCGG	1 cut(s)	1395
MspR9I	CCNGG	3 cut(s)	866, 915, 975
Mva1269I	GAATGC	4 cut(s)	208, 602, 966, 1396
MvaI	CCWGG	3 cut(s)	866, 915, 975
MwoI	GCNNNNNNNGC	4 cut(s)	30, 665, 1050, 1391
NdeII	GATC	6 cut(s)	556, 804, 1135, 1327, 1362, 1367
NlaIII	CATG	4 cut(s)	323, 565, 743, 1212
NlaIV	GGNNCC	2 cut(s)	391, 901
NmuCI	GTSAC	4 cut(s)	472, 587, 1113, 1315
NsiI	ATGCAT	1 cut(s)	1249
NspI	RCATGY	1 cut(s)	323
PceI	AGGCCT	1 cut(s)	33
PciI	ACATGT	1 cut(s)	319
PcsI	WCGNNNNNNNCGW	1 cut(s)	1052
PctI	GAATGC	4 cut(s)	208, 602, 966, 1396
PdmI	GAANNNNTTC	1 cut(s)	1237
PfeI	GAWTC	3 cut(s)	160, 188, 223
PflMI	CCANNNNNTGG	1 cut(s)	1337
PkrI	GCNGC	4 cut(s)	286, 352, 601, 1072
PleI	GAGTC	1 cut(s)	1134
PpsI	GAGTC	1 cut(s)	1134
PscI	ACATGT	1 cut(s)	319
PshBI	ATTAAT	1 cut(s)	696
Psp6I	CCWGG	3 cut(s)	864, 913, 973
PspGI	CCWGG	3 cut(s)	864, 913, 973
PspN4I	GGNNCC	2 cut(s)	391, 901
PspPI	GGNCC	2 cut(s)	756, 917
PstI	CTGCAG	1 cut(s)	355
PsuI	RGATCY	1 cut(s)	556
PvuII	CAGCTG	1 cut(s)	287
RsaI	GTAC	2 cut(s)	383, 1083
RsaNI	GTAC	2 cut(s)	382, 1082
RseI	CAYNNNNRTG	2 cut(s)	86, 905
SaqAI	TTAA	6 cut(s)	107, 171, 468, 696, 1251, 1427
SatI	GCNGC	4 cut(s)	285, 351, 600, 1071
Sau3AI	GATC	6 cut(s)	556, 804, 1135, 1327, 1362, 1367
Sau96I	GGNCC	2 cut(s)	756, 917
SchI	GAGTC	1 cut(s)	1135
ScrFI	CCNGG	3 cut(s)	866, 915, 975
SfaNI	GCATC	5 cut(s)	172, 634, 721, 916, 946
SfcI	CTRYAG	3 cut(s)	351, 816, 921
SmiMI	CAYNNNNRTG	2 cut(s)	86, 905
SmlI	CTYRAG	2 cut(s)	583, 685
SmoI	CTYRAG	2 cut(s)	583, 685
Sse9I	AATT	6 cut(s)	240, 292, 979, 1216, 1428, 1464
SseBI	AGGCCT	1 cut(s)	33
SsiI	CCGC	1 cut(s)	74
SspI	AATATT	1 cut(s)	408
SspMI	CTAG	2 cut(s)	1040, 1419
StuI	AGGCCT	1 cut(s)	33
StyD4I	CCNGG	3 cut(s)	864, 913, 973
StyI	CCWWGG	1 cut(s)	552
TaaI	ACNGT	5 cut(s)	40, 133, 610, 846, 1256
TaiI	ACGT	2 cut(s)	383, 726
TaqI	TCGA	3 cut(s)	180, 194, 1055
TaqII	GACCGA	1 cut(s)	1300
TasI	AATT	6 cut(s)	240, 292, 979, 1216, 1428, 1464
TatI	WGTACW	1 cut(s)	1081
TfiI	GAWTC	3 cut(s)	160, 188, 223
Tru1I	TTAA	6 cut(s)	107, 171, 468, 696, 1251, 1427
Tru9I	TTAA	6 cut(s)	107, 171, 468, 696, 1251, 1427
TscAI	CASTG	5 cut(s)	138, 360, 514, 1084, 1291
TseFI	GTSAC	4 cut(s)	472, 587, 1113, 1315
TseI	GCWGC	4 cut(s)	284, 350, 599, 1070
Tsp45I	GTSAC	4 cut(s)	472, 587, 1113, 1315
TspDTI	ATGAA	6 cut(s)	264, 378, 616, 966, 1197, 1368
TspGWI	ACGGA	2 cut(s)	720, 1438
TspRI	CASTG	5 cut(s)	138, 360, 514, 1084, 1291
Van91I	CCANNNNNTGG	1 cut(s)	1337
VspI	ATTAAT	1 cut(s)	696
XapI	RAATTY	2 cut(s)	240, 1216
XceI	RCATGY	1 cut(s)	323
XcmI	CCANNNNNNNNNTGG	1 cut(s)	559
XmnI	GAANNNNTTC	1 cut(s)	1237
XspI	CTAG	2 cut(s)	1040, 1419
Zsp2I	ATGCAT	1 cut(s)	1249

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.