Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr8

Orthogroup ID

OG0012549

Physical Location & Seq

Genomic Coordinates Reverse (-)

9381638 .. 9384344

Gene Structure 2707 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom08g11080.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1362 bp

ATGGGGTTGCTGAAAGGTGTGGGGTTTAGAGGCCTAAGTATTGCCTTCTTGTTCTTAAATCTTGGGGTGGGATTAGTGGTTGGGATTGGAGTGAACTGGGGGACACAGTTAACACACCCTCTCCCACCAGCAACAATTGTGAAGATGTTGAAGGACAACGGGATCCAAAAGGTCAAGCTTTTCGATGCCGATTCGGATATTCTGAATGCTTTGAGCAAGTCTGGGATTCAGGTGATGGTTGGGATTCCAAATGAGATGCTGTATTCTTTGGCTAACAGTAAGCAGGCAGCTGAGAAATGGGTTTCCAAGAATGTCTCCTCACATGTCTCCAATGGTGTGGATATTAGGTATGCGGCAGTGGGGAATGAACCGTTGTTGTCAACATACAATGGAACCTATATTCCAACAATATTTCCTGCCCTTCAGAATATTCAGTCAGCTCTCATAAATGCCGGTGTGAGCAATCAGGTTAAGGTCACGATTCCCCTCAACGCTGACGTCTATGACAGCAGTGGCTCAGACCTACCTTCTAATGGAGACTTCCGATCAGACACCAAGGATCTCGTGGTGGAAATTGTCAAGTTCTTGAGCGACAACGGTGCTGCATTCACCGTCAATATCTATCCCTTCATAAGCCTCTACAATGATCCCAGTTTCCCTGCTGATTACGCCTTCTTCAATGGATACTCAAGTCCCATTAACGACAATGGAAGAATCTACAACAATGTATTTGATGCAAACCACGACACCCTTGTATGGGCGTTGCAGAAGAACGGATTTGGAAACTTGTCCATAATTGTTGGAGAGATCGGTTGGCCTACAGATGGGGACCGCAATGCAAATTTACTGTATGCCCAGCGGTTCAACCAAGGGTTTATGTCCCATATCAAGGACAACGCAGGGACTCCAATGAGAAGCGGCCCTGTGGACGCCTACTTATTTAGCCTCATCGATGAAGATGCCAAGAGCATTCAGCCAGGTAACTTTGAACGCCATTGGGGGCTGTTTTACTATGACGGAACCCCCAAGTATCAGCTCAGTCTAGGAACTACAAGCTCGAATGGATTAATAGCAGCAAGCGGCGTACAATATCTGGAAAAGAAATGGTGTGTCATGTCACCCTCGGCAAGTCTTGATGATCCAGAAGTGGGGCTAAGCGTGAGCTACGCTTGTTCAAATGCTGATTGCACCAGTCTTGGATATGGAACTTCATGTGGAGATTTGGATGCTCGCGGTAACATTTCATACGCATTTAACAGTTACTATCAAATAAATGATCAGCTAGGTACTGCCTGTAAGTTTCCAAACCTTTCGACAACCACCACGAGTGATCCATCTACTGGAAACTGCAAATTCTCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001871 GO:0003674 GO:0003824 GO:0004553 GO:0005488 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005886 GO:0005911 GO:0009505 GO:0009506 GO:0016020 GO:0016787 GO:0016798 GO:0030054 GO:0030246 GO:0030247 GO:0030312 GO:0031224 GO:0031225 GO:0031226 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044425 GO:0044444 GO:0044459 GO:0044464 GO:0046658 GO:0055044 GO:0071944

KEGG Pathways

Metabolic & Signaling

ko00500 map00500

Pfam Domains

Protein Families

Glyco_hydro_17 X8

Protein Analysis

454

Amino Acids

48.9

Weight (kDa)

4.89

Isoelectric Point (pI)

28.03

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Glyco_hydro_17	PF00332	29 - 347	1e-64	Glycosyl hydrolases family 17
X8	PF07983	368 - 437	6.6e-14	X8 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012549)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G31140
fragaria_vesca	FvH4_2g30580
malus_domestica	MD08G1132400.v1.1 MD15G1113000.v1.1
prunus_persica	Prupe.1G463500_v2.0.a1
pyrus_communis	pycom08g11080 pycom15g10150
rosa_chinensis	RchiOBHm_Chr6g0312431
rosa_laevigata	RLG00000010329
rosa_multiflora	Rmu_sc0008363.1_g000019
rosa_roxburghii	Rroxscaffold_7G00156800
rosa_rugosa	Rorug06G0395600 Rorug06G0395700 Rorug06G0395700
rosa_samantha	Rh6AG513100 Rh6BG523900 Rh6CG529400 Rh6DG515200
rosa_wichuraiana	Rw6G044600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	501
AccB7I	CCANNNNNTGG	1 cut(s)	1340
AccII	CGCG	1 cut(s)	1233
AciI	CCGC	6 cut(s)	353, 832, 859, 918, 1080, 1233
AclWI	GGATC	6 cut(s)	157, 170, 567, 641, 1133, 1325
AcsI	RAATTY	2 cut(s)	841, 1352
AcuI	CTGAAG	1 cut(s)	407
AcyI	GRCGYC	2 cut(s)	498, 930
AfaI	GTAC	2 cut(s)	1086, 1288
AfiI	CCNNNNNNNGG	7 cut(s)	533, 756, 757, 824, 889, 1148, 1340
AflIII	ACRYGT	1 cut(s)	322
AgsI	TTSAA	5 cut(s)	151, 679, 865, 989, 1176
AjnI	CCWGG	1 cut(s)	976
AloI	GAACNNNNNNTCC	2 cut(s)	385, 417
AluBI	AGCT	7 cut(s)	178, 290, 440, 1036, 1056, 1164, 1282
AluI	AGCT	7 cut(s)	178, 290, 440, 1036, 1056, 1164, 1282
Alw26I	GTCTC	3 cut(s)	319, 331, 531
AlwI	GGATC	6 cut(s)	157, 170, 567, 641, 1133, 1325
AoxI	GGCC	3 cut(s)	31, 815, 919
ApeKI	GCWGC	3 cut(s)	287, 602, 1073
ApoI	RAATTY	2 cut(s)	841, 1352
AseI	ATTAAT	1 cut(s)	1067
AspS9I	GGNCC	2 cut(s)	829, 920
AsuHPI	GGTGA	3 cut(s)	244, 601, 1110
AvaII	GGWCC	1 cut(s)	829
BaeI	ACNNNNGTAYC	2 cut(s)	676, 709
BamHI	GGATCC	1 cut(s)	162
BauI	CACGAG	2 cut(s)	563, 1324
BbvI	GCAGC	3 cut(s)	299, 589, 1085
BccI	CCATC	3 cut(s)	229, 818, 1342
BcgI	CGANNNNNNTGC	4 cut(s)	581, 615, 941, 975
BciT130I	CCWGG	1 cut(s)	978
BciVI	GTATCC	1 cut(s)	677
BclI	TGATCA	1 cut(s)	1276
BcoDI	GTCTC	3 cut(s)	319, 331, 531
BfaI	CTAG	2 cut(s)	1043, 1283
BfmI	CTRYAG	1 cut(s)	819
BfuI	GTATCC	1 cut(s)	677
BisI	GCNGC	6 cut(s)	288, 354, 603, 919, 1074, 1081
BlpI	GCTNAGC	1 cut(s)	1154
BlsI	GCNGC	6 cut(s)	289, 355, 604, 920, 1075, 1082
Bme1390I	CCNGG	1 cut(s)	978
Bme18I	GGWCC	1 cut(s)	829
BmgT120I	GGNCC	2 cut(s)	829, 920
BmiI	GGNNCC	4 cut(s)	164, 394, 830, 1021
BmrFI	CCNGG	1 cut(s)	978
BmrI	ACTGGG	2 cut(s)	106, 645
BmsI	GCATC	5 cut(s)	175, 246, 724, 949, 1216
BmuI	ACTGGG	2 cut(s)	106, 645
Bpu1102I	GCTNAGC	1 cut(s)	1154
BpuEI	CTTGAG	2 cut(s)	607, 673
Bsa29I	ATCGAT	1 cut(s)	951
BsaHI	GRCGYC	2 cut(s)	498, 930
BsaJI	CCNNGG	3 cut(s)	555, 868, 1122
BsaXI	ACNNNNNCTCC	2 cut(s)	105, 135
Bsc4I	CCNNNNNNNGG	7 cut(s)	533, 756, 757, 824, 889, 1148, 1340
Bse118I	RCCGGY	1 cut(s)	452
Bse1I	ACTGG	4 cut(s)	101, 651, 1191, 1345
Bse3DI	GCAATG	1 cut(s)	841
BseBI	CCWGG	1 cut(s)	978
BseCI	ATCGAT	1 cut(s)	951
BseDI	CCNNGG	3 cut(s)	555, 868, 1122
BseGI	GGATG	1 cut(s)	1231
BseLI	CCNNNNNNNGG	7 cut(s)	533, 756, 757, 824, 889, 1148, 1340
BseMI	GCAATG	1 cut(s)	841
BseMII	CTCAG	3 cut(s)	282, 531, 1051
BseNI	ACTGG	4 cut(s)	101, 651, 1191, 1345
BseRI	GAGGAG	1 cut(s)	307
BseXI	GCAGC	3 cut(s)	299, 589, 1085
BseYI	CCCAGC	1 cut(s)	855
Bsh1236I	CGCG	1 cut(s)	1233
BshFI	GGCC	3 cut(s)	33, 817, 921
BshVI	ATCGAT	1 cut(s)	951
BsiSI	CCGG	1 cut(s)	453
BslFI	GGGAC	5 cut(s)	115, 678, 842, 865, 916
BslI	CCNNNNNNNGG	7 cut(s)	533, 756, 757, 824, 889, 1148, 1340
BsmAI	GTCTC	3 cut(s)	319, 331, 531
BsmFI	GGGAC	5 cut(s)	115, 678, 842, 865, 916
BsmI	GAATGC	3 cut(s)	211, 605, 969
BsnI	GGCC	3 cut(s)	33, 817, 921
Bsp143I	GATC	8 cut(s)	162, 545, 559, 646, 807, 1138, 1276, 1330
Bsp1720I	GCTNAGC	1 cut(s)	1154
BspACI	CCGC	6 cut(s)	353, 832, 859, 918, 1080, 1233
BspANI	GGCC	3 cut(s)	33, 817, 921
BspCNI	CTCAG	3 cut(s)	283, 530, 1050
BspDI	ATCGAT	1 cut(s)	951
BspFNI	CGCG	1 cut(s)	1233
BspLI	GGNNCC	4 cut(s)	164, 394, 830, 1021
BspPI	GGATC	6 cut(s)	157, 170, 567, 641, 1133, 1325
BsrDI	GCAATG	1 cut(s)	841
BsrFI	RCCGGY	1 cut(s)	452
BsrI	ACTGG	4 cut(s)	101, 651, 1191, 1345
BssAI	RCCGGY	1 cut(s)	452
BssECI	CCNNGG	3 cut(s)	555, 868, 1122
BssMI	GATC	8 cut(s)	162, 545, 559, 646, 807, 1138, 1276, 1330
BssNI	GRCGYC	2 cut(s)	498, 930
BssSI	CACGAG	2 cut(s)	563, 1324
BssT1I	CCWWGG	2 cut(s)	555, 868
Bst2BI	CACGAG	2 cut(s)	563, 1324
Bst2UI	CCWGG	1 cut(s)	978
Bst4CI	ACNGT	7 cut(s)	108, 278, 372, 599, 613, 849, 1259
BstACI	GRCGYC	2 cut(s)	498, 930
BstC8I	GCNNGC	3 cut(s)	285, 1078, 1231
BstDEI	CTNAG	5 cut(s)	35, 291, 517, 1037, 1154
BstF5I	GGATG	1 cut(s)	1231
BstFNI	CGCG	1 cut(s)	1233
BstKTI	GATC	8 cut(s)	165, 548, 562, 649, 810, 1141, 1279, 1333
BstMAI	GTCTC	3 cut(s)	319, 331, 531
BstMBI	GATC	8 cut(s)	162, 545, 559, 646, 807, 1138, 1276, 1330
BstMWI	GCNNNNNNNGC	1 cut(s)	668
BstNI	CCWGG	1 cut(s)	978
BstNSI	RCATGY	1 cut(s)	326
BstSCI	CCNGG	1 cut(s)	976
BstSFI	CTRYAG	1 cut(s)	819
BstUI	CGCG	1 cut(s)	1233
BstV1I	GCAGC	3 cut(s)	299, 589, 1085
BstX2I	RGATCY	2 cut(s)	162, 559
BstXI	CCANNNNNNTGG	1 cut(s)	337
BstYI	RGATCY	2 cut(s)	162, 559
Bsu15I	ATCGAT	1 cut(s)	951
BsuI	GTATCC	1 cut(s)	677
BsuRI	GGCC	3 cut(s)	33, 817, 921
BsuTUI	ATCGAT	1 cut(s)	951
BtsCI	GGATG	1 cut(s)	1231
BtsI	GCAGTG	2 cut(s)	363, 517
BtsIMutI	CAGTG	2 cut(s)	363, 517
Cac8I	GCNNGC	3 cut(s)	285, 1078, 1231
Cfr10I	RCCGGY	1 cut(s)	452
Cfr13I	GGNCC	2 cut(s)	829, 920
ClaI	ATCGAT	1 cut(s)	951
CseI	GACGC	1 cut(s)	938
Csp6I	GTAC	2 cut(s)	1085, 1287
CviAII	CATG	3 cut(s)	323, 1114, 1212
CviQI	GTAC	2 cut(s)	1085, 1287
DdeI	CTNAG	5 cut(s)	35, 291, 517, 1037, 1154
DpnI	GATC	8 cut(s)	164, 547, 561, 648, 809, 1140, 1278, 1332
DpnII	GATC	8 cut(s)	162, 545, 559, 646, 807, 1138, 1276, 1330
Eco130I	CCWWGG	2 cut(s)	555, 868
Eco147I	AGGCCT	1 cut(s)	33
Eco47I	GGWCC	1 cut(s)	829
Eco57I	CTGAAG	1 cut(s)	407
EcoRII	CCWGG	1 cut(s)	976
EcoT14I	CCWWGG	2 cut(s)	555, 868
ErhI	CCWWGG	2 cut(s)	555, 868
FaeI	CATG	3 cut(s)	326, 1117, 1215
FaqI	GGGAC	5 cut(s)	115, 678, 842, 865, 916
FatI	CATG	3 cut(s)	322, 1113, 1211
FbaI	TGATCA	1 cut(s)	1276
Fnu4HI	GCNGC	6 cut(s)	288, 354, 603, 919, 1074, 1081
FokI	GGATG	1 cut(s)	1238
Fsp4HI	GCNGC	6 cut(s)	288, 354, 603, 919, 1074, 1081
FspBI	CTAG	2 cut(s)	1043, 1283
GluI	GCNGC	6 cut(s)	288, 354, 603, 919, 1074, 1081
GsaI	CCCAGC	1 cut(s)	859
HaeIII	GGCC	3 cut(s)	33, 817, 921
HapII	CCGG	1 cut(s)	453
HgaI	GACGC	1 cut(s)	938
Hin1I	GRCGYC	2 cut(s)	498, 930
Hin1II	CATG	3 cut(s)	326, 1117, 1215
HincII	GTYRAC	2 cut(s)	111, 381
HindII	GTYRAC	2 cut(s)	111, 381
HindIII	AAGCTT	1 cut(s)	176
HinfI	GANTC	6 cut(s)	191, 226, 244, 481, 714, 904
HpaI	GTTAAC	1 cut(s)	111
HpaII	CCGG	1 cut(s)	453
HphI	GGTGA	3 cut(s)	244, 601, 1110
Hpy166II	GTNNAC	4 cut(s)	94, 111, 381, 928
Hpy188I	TCNGA	6 cut(s)	196, 204, 426, 520, 545, 550
Hpy188III	TCNNGA	5 cut(s)	478, 586, 1094, 1133, 1142
Hpy8I	GTNNAC	4 cut(s)	94, 111, 381, 928
HpyAV	CCTTC	6 cut(s)	55, 145, 431, 537, 637, 682
HpyCH4III	ACNGT	7 cut(s)	108, 278, 372, 599, 613, 849, 1259
HpyCH4IV	ACGT	1 cut(s)	498
HpyCH4V	TGCA	6 cut(s)	605, 737, 766, 839, 1188, 1350
HpyF10VI	GCNNNNNNNGC	1 cut(s)	668
HpyF3I	CTNAG	5 cut(s)	35, 291, 517, 1037, 1154
HpySE526I	ACGT	1 cut(s)	498
Hsp92I	GRCGYC	2 cut(s)	498, 930
Hsp92II	CATG	3 cut(s)	326, 1117, 1215
Ksp22I	TGATCA	1 cut(s)	1276
KspAI	GTTAAC	1 cut(s)	111
Kzo9I	GATC	8 cut(s)	162, 545, 559, 646, 807, 1138, 1276, 1330
Lsp1109I	GCAGC	3 cut(s)	299, 589, 1085
LweI	GCATC	5 cut(s)	175, 246, 724, 949, 1216
MaeI	CTAG	2 cut(s)	1043, 1283
MaeII	ACGT	1 cut(s)	498
MaeIII	GTNAC	5 cut(s)	475, 980, 1116, 1235, 1259
MalI	GATC	8 cut(s)	164, 547, 561, 648, 809, 1140, 1278, 1332
MboI	GATC	8 cut(s)	162, 545, 559, 646, 807, 1138, 1276, 1330
MboII	GAAGA	5 cut(s)	154, 667, 723, 781, 968
MfeI	CAATTG	1 cut(s)	135
MflI	RGATCY	2 cut(s)	162, 559
MluCI	AATT	5 cut(s)	135, 573, 795, 841, 1352
MlyI	GAGTC	1 cut(s)	898
MmeI	TCCRAC	2 cut(s)	428, 781
MnlI	CCTC	7 cut(s)	23, 129, 328, 497, 647, 956, 1132
MseI	TTAA	6 cut(s)	56, 110, 471, 699, 1067, 1254
MspA1I	CMGCKG	2 cut(s)	290, 859
MspI	CCGG	1 cut(s)	453
MspR9I	CCNGG	1 cut(s)	978
MunI	CAATTG	1 cut(s)	135
Mva1269I	GAATGC	3 cut(s)	211, 605, 969
MvaI	CCWGG	1 cut(s)	978
MvnI	CGCG	1 cut(s)	1233
MwoI	GCNNNNNNNGC	1 cut(s)	668
NdeII	GATC	8 cut(s)	162, 545, 559, 646, 807, 1138, 1276, 1330
NlaIII	CATG	3 cut(s)	326, 1117, 1215
NlaIV	GGNNCC	4 cut(s)	164, 394, 830, 1021
NmeAIII	GCCGAG	1 cut(s)	1103
NmuCI	GTSAC	2 cut(s)	475, 1116
NspI	RCATGY	1 cut(s)	326
PceI	AGGCCT	1 cut(s)	33
PciI	ACATGT	1 cut(s)	322
PctI	GAATGC	3 cut(s)	211, 605, 969
PfeI	GAWTC	5 cut(s)	191, 226, 244, 481, 714
PflMI	CCANNNNNTGG	1 cut(s)	1340
PkrI	GCNGC	6 cut(s)	289, 355, 604, 920, 1075, 1082
PleI	GAGTC	1 cut(s)	898
PpsI	GAGTC	1 cut(s)	898
PscI	ACATGT	1 cut(s)	322
PshBI	ATTAAT	1 cut(s)	1067
Psp6I	CCWGG	1 cut(s)	976
PspFI	CCCAGC	1 cut(s)	855
PspGI	CCWGG	1 cut(s)	976
PspN4I	GGNNCC	4 cut(s)	164, 394, 830, 1021
PspPI	GGNCC	2 cut(s)	829, 920
PsuI	RGATCY	2 cut(s)	162, 559
PvuII	CAGCTG	1 cut(s)	290
RsaI	GTAC	2 cut(s)	1086, 1288
RsaNI	GTAC	2 cut(s)	1085, 1287
SaqAI	TTAA	6 cut(s)	56, 110, 471, 699, 1067, 1254
SatI	GCNGC	6 cut(s)	288, 354, 603, 919, 1074, 1081
Sau3AI	GATC	8 cut(s)	162, 545, 559, 646, 807, 1138, 1276, 1330
Sau96I	GGNCC	2 cut(s)	829, 920
SchI	GAGTC	1 cut(s)	898
ScrFI	CCNGG	1 cut(s)	978
SfaNI	GCATC	5 cut(s)	175, 246, 724, 949, 1216
SfcI	CTRYAG	1 cut(s)	819
SinI	GGWCC	1 cut(s)	829
SmlI	CTYRAG	2 cut(s)	586, 688
SmoI	CTYRAG	2 cut(s)	586, 688
Sse9I	AATT	5 cut(s)	135, 573, 795, 841, 1352
SseBI	AGGCCT	1 cut(s)	33
SsiI	CCGC	6 cut(s)	353, 832, 859, 918, 1080, 1233
SspI	AATATT	2 cut(s)	411, 430
SspMI	CTAG	2 cut(s)	1043, 1283
StuI	AGGCCT	1 cut(s)	33
StyD4I	CCNGG	1 cut(s)	976
StyI	CCWWGG	2 cut(s)	555, 868
TaaI	ACNGT	7 cut(s)	108, 278, 372, 599, 613, 849, 1259
TaiI	ACGT	1 cut(s)	501
TaqI	TCGA	4 cut(s)	183, 951, 1058, 1313
TasI	AATT	5 cut(s)	135, 573, 795, 841, 1352
TauI	GCSGC	3 cut(s)	356, 921, 1083
TfiI	GAWTC	5 cut(s)	191, 226, 244, 481, 714
Tru1I	TTAA	6 cut(s)	56, 110, 471, 699, 1067, 1254
Tru9I	TTAA	6 cut(s)	56, 110, 471, 699, 1067, 1254
TscAI	CASTG	2 cut(s)	363, 517
TseFI	GTSAC	2 cut(s)	475, 1116
TseI	GCWGC	3 cut(s)	287, 602, 1073
Tsp45I	GTSAC	2 cut(s)	475, 1116
TspDTI	ATGAA	5 cut(s)	381, 619, 969, 1200, 1233
TspGWI	ACGGA	2 cut(s)	789, 1032
TspRI	CASTG	2 cut(s)	363, 517
Van91I	CCANNNNNTGG	1 cut(s)	1340
VpaK11BI	GGWCC	1 cut(s)	829
VspI	ATTAAT	1 cut(s)	1067
XapI	RAATTY	2 cut(s)	841, 1352
XceI	RCATGY	1 cut(s)	326
XcmI	CCANNNNNNNNNTGG	1 cut(s)	562
XspI	CTAG	2 cut(s)	1043, 1283
ZraI	GACGTC	1 cut(s)	499

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.