MD08G1132400.v1.1

Belongs to the glycosyl hydrolase 17 family

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr08
Physical Location & Seq
Reverse (-)
12482945 .. 12486474
3530 bp
Loading structure...
UTR
Exon/CDS
Intron
MD08G1132400.v1.1.491

Sequence Viewer

Length: 1476 bp
ATGGGGTTGCTGAAAGGTATGGGCTTTAGAGGCCTAAGTGTTGCCTTCTTGTTCTTAAATCTTGGGGTGGGATTAGTGGTTGGGATTGGGGTGAACTGGGGGACACAGTTAACACACCCTCTCCCACCAGCAACAATTGTGAAGATGTTGAAGGACAACGGGATCCAAAAGGTCAAGCTTTTCGATGCCGATTCGGATATTCTGAATGCTTTGAGCAAGTCTGGGATTCAGGTGATGGTTGGGATTCCAAATGAGATGCTGTATTCTTTGGCTAACAGTAAGCAGGCAGCTGAGAAATGGGTTTCCAAGAATGTCTCCTCACATGTCTCCAATGGTGTGGATATTAGGTATGCGGCAGTGGGGAATGAACCATTGTTGTCAACATACAATGGAACCTATATTCCAACAATATTTCCTGCCCTTCAGAATATTCAGTCAGCTCTCATAAAAGCTGGTGTGAGCAATCAGGTTAAGGTCACGATTCCCCTCAACGCTGACATCTATGACAGCAGTGGCTCAGACCTACCTTCTAATGGAGACTTCCGACCAGACACCAAGGATCTCGTGGTGGAAATTGTCAAGTTCTTGAGCGACAACGGTGCTGCATTCACCGTCAATATCTATCCCTTCATAAGCCTCTACAATGATCCCAGTTTCCCTGCGGATTACGCCTTCTTCAATGGATACTCAAGTCCCATTAACGACAATGGAAGAATCTACAACAATGTATTTGATGCAAACCACGACACCCTTGTATGGGCATTGCAGAAGAACGGATTTGGAAACTTGTCCATAATTGTTGGAGAGATCGGTTGGCCTACAGATGGGGACCGCAATGCAAATTTACAGTATGCCCAGCGGTTCAACCAAGGGTTTATGTCCCATATCAAGAACAACGCAGGGACTCCAATGAGAAGCGGCCCTGTGGACGCCTACTTATTTAGCCTCATCGATGAAGATGCCAAGAGCATTCAGCCGGGTAACTTTGAACGCCATTGGGGGCTGTTTTACTATGACGGAACCCCCAAGTATCAGCTCAGTCTAGGAACTACGGGCTCGAATGGATTAATAGGAGCAAGCGGCGTACAATATCTGGAAAAGAAATGGTGTGTCATGTCGCCCTCGGCAAGTCTTGATGATCCAGAAGTGGCGCTAAGCGTGAGCTACGCTTGTTCAAATGCTGATTGCACCAGTCTTGGATATGGAACTTCATGTGGAGATTTGGATGCTCGCGGCAACATTTCATACGCATTTAACAGTTACTATCAAATGAATGATCAGCTGGATACTGCCTGCAAGTTTCCAAACCTTTCGACTACCACCACGAGTGATCCATCTACTGGAAACTGCAAATTTAGTATCATGATCCGATCATCTTATTCGTCTAGTGTGAACGGCAGAGCTGGCTCCCTTGAAAAGCCTAGTTATTTAGGATTGGTGGTGTTTGTGTTTATGTTCCTGTATACAGTTCTGTGA

Protein Analysis

492

Amino Acids

53.23

Weight (kDa)

5.18

Isoelectric Point (pI)

27.78

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glyco_hydro_17 PF00332 29 - 347 1.2e-64 Glycosyl hydrolases family 17
X8 PF07983 368 - 437 4.5e-14 X8 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0012549)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 1340
AccI GTMKAC 1 cut(s) 1463
AccII CGCG 1 cut(s) 1233
AciI CCGC 7 cut(s) 353, 662, 832, 859, 918, 1080, 1233
AclWI GGATC 7 cut(s) 157, 170, 567, 641, 1133, 1325, 1360
AcsI RAATTY 2 cut(s) 841, 1352
AcuI CTGAAG 1 cut(s) 407
AcyI GRCGYC 1 cut(s) 930
AfaI GTAC 1 cut(s) 1086
AfiI CCNNNNNNNGG 5 cut(s) 533, 756, 757, 824, 1340
AflIII ACRYGT 1 cut(s) 322
AgsI TTSAA 6 cut(s) 151, 679, 865, 989, 1176, 1415
AloI GAACNNNNNNTCC 2 cut(s) 385, 417
AluBI AGCT 8 cut(s) 178, 290, 440, 452, 1036, 1164, 1282, 1403
AluI AGCT 8 cut(s) 178, 290, 440, 452, 1036, 1164, 1282, 1403
Alw26I GTCTC 3 cut(s) 319, 331, 531
AlwI GGATC 7 cut(s) 157, 170, 567, 641, 1133, 1325, 1360
AoxI GGCC 3 cut(s) 31, 815, 919
ApeKI GCWGC 2 cut(s) 287, 602
ApoI RAATTY 2 cut(s) 841, 1352
AseI ATTAAT 1 cut(s) 1067
AspLEI GCGC 1 cut(s) 1153
AspS9I GGNCC 2 cut(s) 829, 920
AsuC2I CCSGG 1 cut(s) 978
AsuHPI GGTGA 3 cut(s) 103, 244, 601
AvaII GGWCC 1 cut(s) 829
BaeI ACNNNNGTAYC 2 cut(s) 676, 709
BamHI GGATCC 1 cut(s) 162
BanII GRGCYC 1 cut(s) 1058
BauI CACGAG 2 cut(s) 563, 1324
BbvI GCAGC 2 cut(s) 299, 589
BccI CCATC 3 cut(s) 229, 818, 1342
BceAI ACGGC 1 cut(s) 1411
BcgI CGANNNNNNTGC 4 cut(s) 581, 615, 941, 975
BciVI GTATCC 2 cut(s) 677, 1279
BclI TGATCA 1 cut(s) 1276
BcnI CCSGG 1 cut(s) 978
BcoDI GTCTC 3 cut(s) 319, 331, 531
BfaI CTAG 3 cut(s) 1043, 1386, 1422
BfmI CTRYAG 1 cut(s) 819
BfoI RGCGCY 1 cut(s) 1154
BfuI GTATCC 2 cut(s) 677, 1279
BisI GCNGC 6 cut(s) 288, 354, 603, 919, 1081, 1234
BlpI GCTNAGC 1 cut(s) 1154
BlsI GCNGC 6 cut(s) 289, 355, 604, 920, 1082, 1235
Bme1390I CCNGG 1 cut(s) 978
Bme18I GGWCC 1 cut(s) 829
BmgT120I GGNCC 2 cut(s) 829, 920
BmiI GGNNCC 5 cut(s) 164, 394, 830, 1021, 1408
BmrFI CCNGG 1 cut(s) 978
BmrI ACTGGG 2 cut(s) 106, 645
BmsI GCATC 5 cut(s) 175, 246, 724, 949, 1216
BmuI ACTGGG 2 cut(s) 106, 645
Bpu1102I GCTNAGC 1 cut(s) 1154
BpuEI CTTGAG 2 cut(s) 607, 673
BpuMI CCSGG 1 cut(s) 978
Bsa29I ATCGAT 1 cut(s) 951
BsaHI GRCGYC 1 cut(s) 930
BsaJI CCNNGG 3 cut(s) 555, 868, 1122
BsaXI ACNNNNNCTCC 2 cut(s) 105, 135
Bsc4I CCNNNNNNNGG 5 cut(s) 533, 756, 757, 824, 1340
Bse1I ACTGG 4 cut(s) 101, 651, 1191, 1345
Bse3DI GCAATG 2 cut(s) 761, 841
BseCI ATCGAT 1 cut(s) 951
BseDI CCNNGG 3 cut(s) 555, 868, 1122
BseGI GGATG 1 cut(s) 1231
BseLI CCNNNNNNNGG 5 cut(s) 533, 756, 757, 824, 1340
BseMI GCAATG 2 cut(s) 761, 841
BseMII CTCAG 3 cut(s) 282, 531, 1051
BseNI ACTGG 4 cut(s) 101, 651, 1191, 1345
BseRI GAGGAG 1 cut(s) 307
BseXI GCAGC 2 cut(s) 299, 589
BseYI CCCAGC 1 cut(s) 855
Bsh1236I CGCG 1 cut(s) 1233
BshFI GGCC 3 cut(s) 33, 817, 921
BshVI ATCGAT 1 cut(s) 951
BsiSI CCGG 1 cut(s) 977
BslFI GGGAC 5 cut(s) 115, 678, 842, 865, 916
BslI CCNNNNNNNGG 5 cut(s) 533, 756, 757, 824, 1340
BsmAI GTCTC 3 cut(s) 319, 331, 531
BsmFI GGGAC 5 cut(s) 115, 678, 842, 865, 916
BsmI GAATGC 3 cut(s) 211, 605, 969
BsnI GGCC 3 cut(s) 33, 817, 921
Bsp1286I GDGCHC 1 cut(s) 1058
Bsp143I GATC 9 cut(s) 162, 559, 646, 807, 1138, 1276, 1330, 1365, 1370
Bsp1720I GCTNAGC 1 cut(s) 1154
BspACI CCGC 7 cut(s) 353, 662, 832, 859, 918, 1080, 1233
BspANI GGCC 3 cut(s) 33, 817, 921
BspCNI CTCAG 3 cut(s) 283, 530, 1050
BspDI ATCGAT 1 cut(s) 951
BspFNI CGCG 1 cut(s) 1233
BspHI TCATGA 1 cut(s) 1362
BspLI GGNNCC 5 cut(s) 164, 394, 830, 1021, 1408
BspPI GGATC 7 cut(s) 157, 170, 567, 641, 1133, 1325, 1360
BsrDI GCAATG 2 cut(s) 761, 841
BsrI ACTGG 4 cut(s) 101, 651, 1191, 1345
BssECI CCNNGG 3 cut(s) 555, 868, 1122
BssMI GATC 9 cut(s) 162, 559, 646, 807, 1138, 1276, 1330, 1365, 1370
BssNAI GTATAC 1 cut(s) 1464
BssNI GRCGYC 1 cut(s) 930
BssSI CACGAG 2 cut(s) 563, 1324
BssT1I CCWWGG 2 cut(s) 555, 868
Bst1107I GTATAC 1 cut(s) 1464
Bst2BI CACGAG 2 cut(s) 563, 1324
Bst4CI ACNGT 7 cut(s) 108, 278, 599, 613, 849, 1259, 1468
BstACI GRCGYC 1 cut(s) 930
BstC8I GCNNGC 5 cut(s) 285, 1078, 1231, 1294, 1405
BstDEI CTNAG 5 cut(s) 35, 291, 517, 1037, 1154
BstF5I GGATG 1 cut(s) 1231
BstFNI CGCG 1 cut(s) 1233
BstH2I RGCGCY 1 cut(s) 1154
BstHHI GCGC 1 cut(s) 1153
BstKTI GATC 9 cut(s) 165, 562, 649, 810, 1141, 1279, 1333, 1368, 1373
BstMAI GTCTC 3 cut(s) 319, 331, 531
BstMBI GATC 9 cut(s) 162, 559, 646, 807, 1138, 1276, 1330, 1365, 1370
BstMWI GCNNNNNNNGC 3 cut(s) 30, 668, 1404
BstNSI RCATGY 1 cut(s) 326
BstSCI CCNGG 1 cut(s) 976
BstSFI CTRYAG 1 cut(s) 819
BstUI CGCG 1 cut(s) 1233
BstV1I GCAGC 2 cut(s) 299, 589
BstX2I RGATCY 2 cut(s) 162, 559
BstXI CCANNNNNNTGG 1 cut(s) 337
BstYI RGATCY 2 cut(s) 162, 559
BstZ17I GTATAC 1 cut(s) 1464
Bsu15I ATCGAT 1 cut(s) 951
BsuI GTATCC 2 cut(s) 677, 1279
BsuRI GGCC 3 cut(s) 33, 817, 921
BsuTUI ATCGAT 1 cut(s) 951
BtsCI GGATG 1 cut(s) 1231
BtsI GCAGTG 2 cut(s) 363, 517
BtsIMutI CAGTG 2 cut(s) 363, 517
Cac8I GCNNGC 5 cut(s) 285, 1078, 1231, 1294, 1405
CciI TCATGA 1 cut(s) 1362
CfoI GCGC 1 cut(s) 1153
Cfr13I GGNCC 2 cut(s) 829, 920
ClaI ATCGAT 1 cut(s) 951
CseI GACGC 1 cut(s) 938
Csp6I GTAC 1 cut(s) 1085
CviAII CATG 4 cut(s) 323, 1114, 1212, 1363
CviQI GTAC 1 cut(s) 1085
DdeI CTNAG 5 cut(s) 35, 291, 517, 1037, 1154
DpnI GATC 9 cut(s) 164, 561, 648, 809, 1140, 1278, 1332, 1367, 1372
DpnII GATC 9 cut(s) 162, 559, 646, 807, 1138, 1276, 1330, 1365, 1370
Eco130I CCWWGG 2 cut(s) 555, 868
Eco147I AGGCCT 1 cut(s) 33
Eco24I GRGCYC 1 cut(s) 1058
Eco47I GGWCC 1 cut(s) 829
Eco57I CTGAAG 1 cut(s) 407
EcoT14I CCWWGG 2 cut(s) 555, 868
EcoT38I GRGCYC 1 cut(s) 1058
ErhI CCWWGG 2 cut(s) 555, 868
FaeI CATG 4 cut(s) 326, 1117, 1215, 1366
FaqI GGGAC 5 cut(s) 115, 678, 842, 865, 916
FatI CATG 4 cut(s) 322, 1113, 1211, 1362
FbaI TGATCA 1 cut(s) 1276
FblI GTMKAC 1 cut(s) 1463
Fnu4HI GCNGC 6 cut(s) 288, 354, 603, 919, 1081, 1234
FokI GGATG 1 cut(s) 1238
FriOI GRGCYC 1 cut(s) 1058
Fsp4HI GCNGC 6 cut(s) 288, 354, 603, 919, 1081, 1234
FspBI CTAG 3 cut(s) 1043, 1386, 1422
GlaI GCGC 1 cut(s) 1152
GluI GCNGC 6 cut(s) 288, 354, 603, 919, 1081, 1234
GsaI CCCAGC 1 cut(s) 859
HaeII RGCGCY 1 cut(s) 1154
HaeIII GGCC 3 cut(s) 33, 817, 921
HapII CCGG 1 cut(s) 977
HgaI GACGC 1 cut(s) 938
HhaI GCGC 1 cut(s) 1153
Hin1I GRCGYC 1 cut(s) 930
Hin1II CATG 4 cut(s) 326, 1117, 1215, 1366
Hin6I GCGC 1 cut(s) 1151
HinP1I GCGC 1 cut(s) 1151
HincII GTYRAC 2 cut(s) 111, 381
HindII GTYRAC 2 cut(s) 111, 381
HindIII AAGCTT 1 cut(s) 176
HinfI GANTC 6 cut(s) 191, 226, 244, 481, 714, 904
HpaI GTTAAC 1 cut(s) 111
HpaII CCGG 1 cut(s) 977
HphI GGTGA 3 cut(s) 103, 244, 601
Hpy166II GTNNAC 6 cut(s) 94, 111, 381, 928, 1393, 1464
Hpy188I TCNGA 6 cut(s) 196, 204, 426, 520, 545, 1370
Hpy188III TCNNGA 7 cut(s) 478, 586, 889, 1094, 1133, 1142, 1363
Hpy8I GTNNAC 6 cut(s) 94, 111, 381, 928, 1393, 1464
HpyAV CCTTC 6 cut(s) 55, 145, 431, 537, 637, 682
HpyCH4III ACNGT 7 cut(s) 108, 278, 599, 613, 849, 1259, 1468
HpyCH4V TGCA 7 cut(s) 605, 737, 766, 839, 1188, 1296, 1350
HpyF10VI GCNNNNNNNGC 3 cut(s) 30, 668, 1404
HpyF3I CTNAG 5 cut(s) 35, 291, 517, 1037, 1154
Hsp92I GRCGYC 1 cut(s) 930
Hsp92II CATG 4 cut(s) 326, 1117, 1215, 1366
HspAI GCGC 1 cut(s) 1151
Ksp22I TGATCA 1 cut(s) 1276
KspAI GTTAAC 1 cut(s) 111
Kzo9I GATC 9 cut(s) 162, 559, 646, 807, 1138, 1276, 1330, 1365, 1370
LmnI GCTCC 2 cut(s) 1073, 1412
Lsp1109I GCAGC 2 cut(s) 299, 589
LweI GCATC 5 cut(s) 175, 246, 724, 949, 1216
MaeI CTAG 3 cut(s) 1043, 1386, 1422
MaeIII GTNAC 3 cut(s) 475, 980, 1259
MalI GATC 9 cut(s) 164, 561, 648, 809, 1140, 1278, 1332, 1367, 1372
MboI GATC 9 cut(s) 162, 559, 646, 807, 1138, 1276, 1330, 1365, 1370
MboII GAAGA 5 cut(s) 154, 667, 723, 781, 968
MfeI CAATTG 1 cut(s) 135
MflI RGATCY 2 cut(s) 162, 559
MhlI GDGCHC 1 cut(s) 1058
MluCI AATT 5 cut(s) 135, 573, 795, 841, 1352
MlyI GAGTC 1 cut(s) 898
MmeI TCCRAC 3 cut(s) 428, 568, 781
MnlI CCTC 7 cut(s) 23, 129, 328, 497, 647, 956, 1132
MseI TTAA 6 cut(s) 56, 110, 471, 699, 1067, 1254
MspA1I CMGCKG 3 cut(s) 290, 859, 1282
MspI CCGG 1 cut(s) 977
MspR9I CCNGG 1 cut(s) 978
MunI CAATTG 1 cut(s) 135
Mva1269I GAATGC 3 cut(s) 211, 605, 969
MvnI CGCG 1 cut(s) 1233
MwoI GCNNNNNNNGC 3 cut(s) 30, 668, 1404
NciI CCSGG 1 cut(s) 978
NdeII GATC 9 cut(s) 162, 559, 646, 807, 1138, 1276, 1330, 1365, 1370
NlaIII CATG 4 cut(s) 326, 1117, 1215, 1366
NlaIV GGNNCC 5 cut(s) 164, 394, 830, 1021, 1408
NmeAIII GCCGAG 1 cut(s) 1103
NmuCI GTSAC 1 cut(s) 475
NspI RCATGY 1 cut(s) 326
PagI TCATGA 1 cut(s) 1362
PceI AGGCCT 1 cut(s) 33
PciI ACATGT 1 cut(s) 322
PctI GAATGC 3 cut(s) 211, 605, 969
PfeI GAWTC 5 cut(s) 191, 226, 244, 481, 714
PflMI CCANNNNNTGG 1 cut(s) 1340
PkrI GCNGC 6 cut(s) 289, 355, 604, 920, 1082, 1235
PleI GAGTC 1 cut(s) 898
PpsI GAGTC 1 cut(s) 898
PscI ACATGT 1 cut(s) 322
PshBI ATTAAT 1 cut(s) 1067
PspFI CCCAGC 1 cut(s) 855
PspN4I GGNNCC 5 cut(s) 164, 394, 830, 1021, 1408
PspPI GGNCC 2 cut(s) 829, 920
PsuI RGATCY 2 cut(s) 162, 559
PvuII CAGCTG 2 cut(s) 290, 1282
RsaI GTAC 1 cut(s) 1086
RsaNI GTAC 1 cut(s) 1085
SaqAI TTAA 6 cut(s) 56, 110, 471, 699, 1067, 1254
SatI GCNGC 6 cut(s) 288, 354, 603, 919, 1081, 1234
Sau3AI GATC 9 cut(s) 162, 559, 646, 807, 1138, 1276, 1330, 1365, 1370
Sau96I GGNCC 2 cut(s) 829, 920
SchI GAGTC 1 cut(s) 898
ScrFI CCNGG 1 cut(s) 978
SduI GDGCHC 1 cut(s) 1058
SfaNI GCATC 5 cut(s) 175, 246, 724, 949, 1216
SfcI CTRYAG 1 cut(s) 819
SinI GGWCC 1 cut(s) 829
SmlI CTYRAG 2 cut(s) 586, 688
SmoI CTYRAG 2 cut(s) 586, 688
Sse9I AATT 5 cut(s) 135, 573, 795, 841, 1352
SseBI AGGCCT 1 cut(s) 33
SsiI CCGC 7 cut(s) 353, 662, 832, 859, 918, 1080, 1233
SspI AATATT 2 cut(s) 411, 430
SspMI CTAG 3 cut(s) 1043, 1386, 1422
StuI AGGCCT 1 cut(s) 33
StyD4I CCNGG 1 cut(s) 976
StyI CCWWGG 2 cut(s) 555, 868
TaaI ACNGT 7 cut(s) 108, 278, 599, 613, 849, 1259, 1468
TaqI TCGA 4 cut(s) 183, 951, 1058, 1313
TasI AATT 5 cut(s) 135, 573, 795, 841, 1352
TauI GCSGC 4 cut(s) 356, 921, 1083, 1236
TfiI GAWTC 5 cut(s) 191, 226, 244, 481, 714
Tru1I TTAA 6 cut(s) 56, 110, 471, 699, 1067, 1254
Tru9I TTAA 6 cut(s) 56, 110, 471, 699, 1067, 1254
TscAI CASTG 2 cut(s) 363, 517
TseFI GTSAC 1 cut(s) 475
TseI GCWGC 2 cut(s) 287, 602
Tsp45I GTSAC 1 cut(s) 475
TspDTI ATGAA 6 cut(s) 381, 619, 969, 1200, 1233, 1286
TspGWI ACGGA 2 cut(s) 789, 1032
TspRI CASTG 2 cut(s) 363, 517
Van91I CCANNNNNTGG 1 cut(s) 1340
VpaK11BI GGWCC 1 cut(s) 829
VspI ATTAAT 1 cut(s) 1067
XapI RAATTY 2 cut(s) 841, 1352
XceI RCATGY 1 cut(s) 326
XcmI CCANNNNNNNNNTGG 1 cut(s) 562
XmiI GTMKAC 1 cut(s) 1463
XspI CTAG 3 cut(s) 1043, 1386, 1422
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.