MD15G1113000.v1.1

Belongs to the glycosyl hydrolase 17 family

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr15
Physical Location & Seq
Forward (+)
7942364 .. 7945695
3332 bp
Loading structure...
UTR
Exon/CDS
Intron
MD15G1113000.v1.1.491

Sequence Viewer

Length: 1473 bp
ATGGGGTTGCTGAAAGGTGTGGGCTTTAGAGGCCTAAGTGTTGCCTTATTGTTCTTCAATCTGCTGGTGGGGTTAGTGGTTGGGATTGGAGCGAACTGGGGGACACAGTTAACACACCCTCTCCCACCAGCAACTGTTGTGAAGATGTTGAAGAACAACGGGATCCAAAAGGTCAAGCTTTTCGATGCCGATTCGGGTATTCTGAATGCTCTGAGCAAGTCTGGGATTCAGGTCATGGTTGGAATCCCCAATGAGATGCTGTATTCTTTGGCTAACAGTATGCAGGCAGCTGAGAAATGGGTTTCCAAGAATGTCTCCTCACATGTCTCCAATGGTGTAGATATTAGGTATGCTGCAGTGGGGAATGAACCATTGTTGTCAACATACAATGGAACTTTTCTTCCAACAATATTTCCTGCCCTTCAGAATATCCAGTCAGCTCTCATAAAAGCCGGTGTGAGCAATCAGGTGAAGGTCACGATTCCTATCAATGCTGACGTCTACGACAGTGGTGGCTCAGACCTACCTTCTAATGGAGACTTTCGACCAGACACCAAGGATCTCATGTTGGAAATTGTCAAGTTCCTGAGTGACAACGGTGCTGCATTCACTGTCAATATATATCCCTTCATAAGCCTCTATAATGATGCCAATTTTCCAGCTGATTACGCCTTCTTCAATGGATACTCGGGTGCTATTAACGATAATGGAAGAATCTACAACAATGTGTTTGATGCAAACCATGACACCCTTGTATGGGCGTTACAGAAAAACGGATTTGGAAACTTGTCCATAATTATTGGAGAGATCGGTTGGCCTACAGATGGGAACCTGAATGCAAATATGCAGAATGCTCAACGGTTCAACCAAGGGTTTATGTCCCATATCAAGAATAACGCAGGGACTCCAATGAGAGCCGGCCCTGTGGACGCCTACTTATTTAGCCTCATCGATGAAGATGCCAAGAGCATTCAGCCAGGTAACTTTGAACGCCATTGGGGGCTGTTTTACTGGGACGGAACACCTAAGTATCAGCTCAGTCTAGGCACTACAGGCTCGAATGGATTAGTAGCAGCAAGCGGCGTACAATATCTGGAAAAGAAATGGTGTGTCATGTCGCCCTCAGCGAGTCTTGATGATCCAGAAGTGGCGCTAAGCGTGAGCTATGCATGTTCAAAAGCTGATTGCACCAGTCTCGGATATGGAACTTCGTGTGGAGATTTGGATGCTCGCGGAAACATTTCGTATGCATTTAACAGTTACTATCAAATAAATAATCAGCTGGACACTGCCTGCAAGTTTCCAAACCTTTCGACCGTCGCCACGAGTGATCCATCTACTGGAAACTGCAAATTTAGGATCATGATCCGAGCATCTTCTTCGTCTAGTGAGAACAGCGGAGCTGGCTCTCTTGAAAAGCCTAGTTGTTTAGGAATGGTGTTTGTGTTTATGTTCCTGTATACAATTCTGTGA

Protein Analysis

491

Amino Acids

52.81

Weight (kDa)

5.43

Isoelectric Point (pI)

23.65

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glyco_hydro_17 PF00332 29 - 347 1.1e-65 Glycosyl hydrolases family 17
X8 PF07983 368 - 437 6.5e-14 X8 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0012549)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 501
AccB7I CCANNNNNTGG 1 cut(s) 1340
AccI GTMKAC 2 cut(s) 501, 1460
AccII CGCG 1 cut(s) 1233
AciI CCGC 3 cut(s) 1080, 1233, 1398
AclWI GGATC 7 cut(s) 157, 170, 567, 1133, 1325, 1360, 1367
AcsI RAATTY 1 cut(s) 1352
AcuI CTGAAG 1 cut(s) 407
AcyI GRCGYC 2 cut(s) 498, 930
AfaI GTAC 1 cut(s) 1086
AfiI CCNNNNNNNGG 5 cut(s) 533, 756, 757, 824, 1340
AflIII ACRYGT 1 cut(s) 322
AgsI TTSAA 7 cut(s) 58, 151, 679, 865, 989, 1176, 1415
AjnI CCWGG 1 cut(s) 976
AloI GAACNNNNNNTCC 2 cut(s) 385, 417
AluBI AGCT 9 cut(s) 178, 290, 440, 662, 1036, 1164, 1181, 1282, 1403
AluI AGCT 9 cut(s) 178, 290, 440, 662, 1036, 1164, 1181, 1282, 1403
Alw26I GTCTC 4 cut(s) 319, 331, 531, 1199
AlwI GGATC 7 cut(s) 157, 170, 567, 1133, 1325, 1360, 1367
AlwNI CAGNNNCTG 1 cut(s) 134
Ama87I CYCGRG 1 cut(s) 688
AoxI GGCC 3 cut(s) 31, 815, 919
ApeKI GCWGC 4 cut(s) 287, 353, 602, 1073
ApoI RAATTY 1 cut(s) 1352
Asp700I GAANNNNTTC 1 cut(s) 1240
AspLEI GCGC 1 cut(s) 1153
AspS9I GGNCC 1 cut(s) 920
AsuHPI GGTGA 1 cut(s) 481
AvaI CYCGRG 1 cut(s) 688
BaeI ACNNNNGTAYC 4 cut(s) 676, 709, 1013, 1046
BamHI GGATCC 1 cut(s) 162
BauI CACGAG 1 cut(s) 1324
BbvCI CCTCAGC 1 cut(s) 1123
BbvI GCAGC 4 cut(s) 299, 340, 589, 1085
BccI CCATC 2 cut(s) 818, 1342
BcgI CGANNNNNNTGC 6 cut(s) 941, 975, 1177, 1211, 1362, 1396
BciT130I CCWGG 1 cut(s) 978
BciVI GTATCC 1 cut(s) 677
BcoDI GTCTC 4 cut(s) 319, 331, 531, 1199
BfaI CTAG 3 cut(s) 1043, 1386, 1422
BfmI CTRYAG 3 cut(s) 354, 819, 1050
BfoI RGCGCY 1 cut(s) 1154
BfuI GTATCC 1 cut(s) 677
BisI GCNGC 5 cut(s) 288, 354, 603, 1074, 1081
BlpI GCTNAGC 1 cut(s) 1154
BlsI GCNGC 5 cut(s) 289, 355, 604, 1075, 1082
Bme1390I CCNGG 1 cut(s) 978
BmeT110I CYCGRG 1 cut(s) 688
BmgT120I GGNCC 1 cut(s) 920
BmiI GGNNCC 2 cut(s) 164, 830
BmrFI CCNGG 1 cut(s) 978
BmrI ACTGGG 2 cut(s) 106, 1021
BmsI GCATC 7 cut(s) 175, 246, 637, 724, 949, 1216, 1382
BmuI ACTGGG 2 cut(s) 106, 1021
Bpu10I CCTNAGC 1 cut(s) 1123
Bpu1102I GCTNAGC 1 cut(s) 1154
Bsa29I ATCGAT 1 cut(s) 951
BsaBI GATNNNNATC 2 cut(s) 485, 1364
BsaHI GRCGYC 2 cut(s) 498, 930
BsaJI CCNNGG 2 cut(s) 555, 868
BsaXI ACNNNNNCTCC 2 cut(s) 105, 135
Bsc4I CCNNNNNNNGG 5 cut(s) 533, 756, 757, 824, 1340
Bse118I RCCGGY 2 cut(s) 452, 917
Bse1I ACTGG 5 cut(s) 101, 433, 1016, 1191, 1345
Bse8I GATNNNNATC 2 cut(s) 485, 1364
BseBI CCWGG 1 cut(s) 978
BseCI ATCGAT 1 cut(s) 951
BseDI CCNNGG 2 cut(s) 555, 868
BseGI GGATG 1 cut(s) 1231
BseJI GATNNNNATC 2 cut(s) 485, 1364
BseLI CCNNNNNNNGG 5 cut(s) 533, 756, 757, 824, 1340
BseMII CTCAG 6 cut(s) 203, 282, 531, 578, 1051, 1137
BseNI ACTGG 5 cut(s) 101, 433, 1016, 1191, 1345
BseRI GAGGAG 1 cut(s) 307
BseXI GCAGC 4 cut(s) 299, 340, 589, 1085
Bsh1236I CGCG 1 cut(s) 1233
Bsh1285I CGRYCG 1 cut(s) 1317
BshFI GGCC 3 cut(s) 33, 817, 921
BshVI ATCGAT 1 cut(s) 951
BsiEI CGRYCG 1 cut(s) 1317
BsiHKCI CYCGRG 1 cut(s) 688
BsiSI CCGG 2 cut(s) 453, 918
BslFI GGGAC 4 cut(s) 115, 865, 916, 1028
BslI CCNNNNNNNGG 5 cut(s) 533, 756, 757, 824, 1340
BsmAI GTCTC 4 cut(s) 319, 331, 531, 1199
BsmFI GGGAC 4 cut(s) 115, 865, 916, 1028
BsmI GAATGC 5 cut(s) 211, 605, 841, 856, 969
BsnI GGCC 3 cut(s) 33, 817, 921
BsoBI CYCGRG 1 cut(s) 688
Bsp143I GATC 7 cut(s) 162, 559, 807, 1138, 1330, 1359, 1365
Bsp1720I GCTNAGC 1 cut(s) 1154
BspACI CCGC 3 cut(s) 1080, 1233, 1398
BspANI GGCC 3 cut(s) 33, 817, 921
BspCNI CTCAG 6 cut(s) 204, 283, 530, 579, 1050, 1136
BspDI ATCGAT 1 cut(s) 951
BspFNI CGCG 1 cut(s) 1233
BspHI TCATGA 1 cut(s) 1362
BspLI GGNNCC 2 cut(s) 164, 830
BspMAI CTGCAG 1 cut(s) 358
BspPI GGATC 7 cut(s) 157, 170, 567, 1133, 1325, 1360, 1367
BsrFI RCCGGY 2 cut(s) 452, 917
BsrI ACTGG 5 cut(s) 101, 433, 1016, 1191, 1345
BssAI RCCGGY 2 cut(s) 452, 917
BssECI CCNNGG 2 cut(s) 555, 868
BssMI GATC 7 cut(s) 162, 559, 807, 1138, 1330, 1359, 1365
BssNAI GTATAC 1 cut(s) 1461
BssNI GRCGYC 2 cut(s) 498, 930
BssSI CACGAG 1 cut(s) 1324
BssT1I CCWWGG 2 cut(s) 555, 868
Bst1107I GTATAC 1 cut(s) 1461
Bst2BI CACGAG 1 cut(s) 1324
Bst2UI CCWGG 1 cut(s) 978
Bst4CI ACNGT 9 cut(s) 108, 136, 278, 509, 599, 613, 861, 1259, 1318
BstACI GRCGYC 2 cut(s) 498, 930
BstC8I GCNNGC 6 cut(s) 285, 919, 1078, 1231, 1294, 1405
BstDEI CTNAG 9 cut(s) 35, 212, 291, 517, 587, 1026, 1037, 1123, 1154
BstF5I GGATG 1 cut(s) 1231
BstFNI CGCG 1 cut(s) 1233
BstH2I RGCGCY 1 cut(s) 1154
BstHHI GCGC 1 cut(s) 1153
BstKTI GATC 7 cut(s) 165, 562, 810, 1141, 1333, 1362, 1368
BstMAI GTCTC 4 cut(s) 319, 331, 531, 1199
BstMBI GATC 7 cut(s) 162, 559, 807, 1138, 1330, 1359, 1365
BstMCI CGRYCG 1 cut(s) 1317
BstMWI GCNNNNNNNGC 4 cut(s) 30, 668, 1053, 1404
BstNI CCWGG 1 cut(s) 978
BstNSI RCATGY 2 cut(s) 326, 1173
BstSCI CCNGG 1 cut(s) 976
BstSFI CTRYAG 3 cut(s) 354, 819, 1050
BstUI CGCG 1 cut(s) 1233
BstV1I GCAGC 4 cut(s) 299, 340, 589, 1085
BstX2I RGATCY 2 cut(s) 162, 559
BstYI RGATCY 2 cut(s) 162, 559
BstZ17I GTATAC 1 cut(s) 1461
Bsu15I ATCGAT 1 cut(s) 951
BsuI GTATCC 1 cut(s) 677
BsuRI GGCC 3 cut(s) 33, 817, 921
BsuTUI ATCGAT 1 cut(s) 951
BtsCI GGATG 1 cut(s) 1231
BtsI GCAGTG 2 cut(s) 363, 1287
BtsIMutI CAGTG 4 cut(s) 363, 514, 609, 1287
Cac8I GCNNGC 6 cut(s) 285, 919, 1078, 1231, 1294, 1405
CaiI CAGNNNCTG 1 cut(s) 134
CciI TCATGA 1 cut(s) 1362
CfoI GCGC 1 cut(s) 1153
Cfr10I RCCGGY 2 cut(s) 452, 917
Cfr13I GGNCC 1 cut(s) 920
ClaI ATCGAT 1 cut(s) 951
CseI GACGC 1 cut(s) 938
Csp6I GTAC 1 cut(s) 1085
CviAII CATG 7 cut(s) 235, 323, 565, 743, 1114, 1170, 1363
CviQI GTAC 1 cut(s) 1085
DdeI CTNAG 9 cut(s) 35, 212, 291, 517, 587, 1026, 1037, 1123, 1154
DpnI GATC 7 cut(s) 164, 561, 809, 1140, 1332, 1361, 1367
DpnII GATC 7 cut(s) 162, 559, 807, 1138, 1330, 1359, 1365
Eco130I CCWWGG 2 cut(s) 555, 868
Eco147I AGGCCT 1 cut(s) 33
Eco57I CTGAAG 1 cut(s) 407
Eco88I CYCGRG 1 cut(s) 688
EcoRII CCWGG 1 cut(s) 976
EcoT14I CCWWGG 2 cut(s) 555, 868
EcoT22I ATGCAT 2 cut(s) 1171, 1252
ErhI CCWWGG 2 cut(s) 555, 868
FaeI CATG 7 cut(s) 238, 326, 568, 746, 1117, 1173, 1366
FaqI GGGAC 4 cut(s) 115, 865, 916, 1028
FatI CATG 7 cut(s) 234, 322, 564, 742, 1113, 1169, 1362
FblI GTMKAC 2 cut(s) 501, 1460
Fnu4HI GCNGC 5 cut(s) 288, 354, 603, 1074, 1081
FokI GGATG 1 cut(s) 1238
Fsp4HI GCNGC 5 cut(s) 288, 354, 603, 1074, 1081
FspBI CTAG 3 cut(s) 1043, 1386, 1422
GlaI GCGC 1 cut(s) 1152
GluI GCNGC 5 cut(s) 288, 354, 603, 1074, 1081
HaeII RGCGCY 1 cut(s) 1154
HaeIII GGCC 3 cut(s) 33, 817, 921
HapII CCGG 2 cut(s) 453, 918
HgaI GACGC 1 cut(s) 938
HhaI GCGC 1 cut(s) 1153
Hin1I GRCGYC 2 cut(s) 498, 930
Hin1II CATG 7 cut(s) 238, 326, 568, 746, 1117, 1173, 1366
Hin6I GCGC 1 cut(s) 1151
HinP1I GCGC 1 cut(s) 1151
HincII GTYRAC 2 cut(s) 111, 381
HindII GTYRAC 2 cut(s) 111, 381
HindIII AAGCTT 1 cut(s) 176
HinfI GANTC 7 cut(s) 191, 226, 243, 481, 714, 904, 1129
HpaI GTTAAC 1 cut(s) 111
HpaII CCGG 2 cut(s) 453, 918
HphI GGTGA 1 cut(s) 481
Hpy166II GTNNAC 5 cut(s) 111, 381, 502, 928, 1461
Hpy188I TCNGA 6 cut(s) 204, 213, 426, 520, 1199, 1370
Hpy188III TCNNGA 8 cut(s) 478, 586, 889, 1094, 1133, 1142, 1363, 1412
Hpy8I GTNNAC 5 cut(s) 111, 381, 502, 928, 1461
Hpy99I CGWCG 1 cut(s) 1322
HpyAV CCTTC 5 cut(s) 431, 466, 537, 637, 682
HpyCH4III ACNGT 9 cut(s) 108, 136, 278, 509, 599, 613, 861, 1259, 1318
HpyCH4IV ACGT 1 cut(s) 498
HpyF10VI GCNNNNNNNGC 4 cut(s) 30, 668, 1053, 1404
HpyF3I CTNAG 9 cut(s) 35, 212, 291, 517, 587, 1026, 1037, 1123, 1154
HpySE526I ACGT 1 cut(s) 498
Hsp92I GRCGYC 2 cut(s) 498, 930
Hsp92II CATG 7 cut(s) 238, 326, 568, 746, 1117, 1173, 1366
HspAI GCGC 1 cut(s) 1151
KroI GCCGGC 1 cut(s) 917
KroNI GCCGGC 1 cut(s) 919
KspAI GTTAAC 1 cut(s) 111
Kzo9I GATC 7 cut(s) 162, 559, 807, 1138, 1330, 1359, 1365
LmnI GCTCC 2 cut(s) 89, 1400
Lsp1109I GCAGC 4 cut(s) 299, 340, 589, 1085
LweI GCATC 7 cut(s) 175, 246, 637, 724, 949, 1216, 1382
MaeI CTAG 3 cut(s) 1043, 1386, 1422
MaeII ACGT 1 cut(s) 498
MaeIII GTNAC 5 cut(s) 475, 590, 762, 980, 1259
MalI GATC 7 cut(s) 164, 561, 809, 1140, 1332, 1361, 1367
MboI GATC 7 cut(s) 162, 559, 807, 1138, 1330, 1359, 1365
MboII GAAGA 9 cut(s) 46, 154, 163, 392, 667, 723, 968, 1368, 1371
MflI RGATCY 2 cut(s) 162, 559
MluCI AATT 5 cut(s) 573, 652, 795, 1352, 1464
MlyI GAGTC 2 cut(s) 898, 1138
MmeI TCCRAC 3 cut(s) 220, 428, 549
MnlI CCTC 6 cut(s) 23, 129, 328, 647, 956, 1132
Mph1103I ATGCAT 2 cut(s) 1171, 1252
MroNI GCCGGC 1 cut(s) 917
MroXI GAANNNNTTC 1 cut(s) 1240
MseI TTAA 3 cut(s) 110, 699, 1254
MspA1I CMGCKG 4 cut(s) 290, 662, 1282, 1398
MspI CCGG 2 cut(s) 453, 918
MspR9I CCNGG 1 cut(s) 978
Mva1269I GAATGC 5 cut(s) 211, 605, 841, 856, 969
MvaI CCWGG 1 cut(s) 978
MvnI CGCG 1 cut(s) 1233
MwoI GCNNNNNNNGC 4 cut(s) 30, 668, 1053, 1404
NaeI GCCGGC 1 cut(s) 919
NdeII GATC 7 cut(s) 162, 559, 807, 1138, 1330, 1359, 1365
NgoMIV GCCGGC 1 cut(s) 917
NlaIII CATG 7 cut(s) 238, 326, 568, 746, 1117, 1173, 1366
NlaIV GGNNCC 2 cut(s) 164, 830
NmuCI GTSAC 2 cut(s) 475, 590
NsiI ATGCAT 2 cut(s) 1171, 1252
NspI RCATGY 2 cut(s) 326, 1173
PagI TCATGA 1 cut(s) 1362
PceI AGGCCT 1 cut(s) 33
PciI ACATGT 1 cut(s) 322
PcsI WCGNNNNNNNCGW 1 cut(s) 1124
PctI GAATGC 5 cut(s) 211, 605, 841, 856, 969
PdiI GCCGGC 1 cut(s) 919
PdmI GAANNNNTTC 1 cut(s) 1240
PfeI GAWTC 5 cut(s) 191, 226, 243, 481, 714
PflMI CCANNNNNTGG 1 cut(s) 1340
PkrI GCNGC 5 cut(s) 289, 355, 604, 1075, 1082
PleI GAGTC 2 cut(s) 898, 1137
PpsI GAGTC 2 cut(s) 898, 1137
PscI ACATGT 1 cut(s) 322
Psp6I CCWGG 1 cut(s) 976
PspGI CCWGG 1 cut(s) 976
PspN4I GGNNCC 2 cut(s) 164, 830
PspPI GGNCC 1 cut(s) 920
PstI CTGCAG 1 cut(s) 358
PstNI CAGNNNCTG 1 cut(s) 134
PsuI RGATCY 2 cut(s) 162, 559
PvuII CAGCTG 3 cut(s) 290, 662, 1282
RsaI GTAC 1 cut(s) 1086
RsaNI GTAC 1 cut(s) 1085
SaqAI TTAA 3 cut(s) 110, 699, 1254
SatI GCNGC 5 cut(s) 288, 354, 603, 1074, 1081
Sau3AI GATC 7 cut(s) 162, 559, 807, 1138, 1330, 1359, 1365
Sau96I GGNCC 1 cut(s) 920
SchI GAGTC 2 cut(s) 898, 1138
ScrFI CCNGG 1 cut(s) 978
SfaNI GCATC 7 cut(s) 175, 246, 637, 724, 949, 1216, 1382
SfcI CTRYAG 3 cut(s) 354, 819, 1050
Sse9I AATT 5 cut(s) 573, 652, 795, 1352, 1464
SseBI AGGCCT 1 cut(s) 33
SsiI CCGC 3 cut(s) 1080, 1233, 1398
SspI AATATT 1 cut(s) 411
SspMI CTAG 3 cut(s) 1043, 1386, 1422
StuI AGGCCT 1 cut(s) 33
StyD4I CCNGG 1 cut(s) 976
StyI CCWWGG 2 cut(s) 555, 868
TaaI ACNGT 9 cut(s) 108, 136, 278, 509, 599, 613, 861, 1259, 1318
TaiI ACGT 1 cut(s) 501
TaqI TCGA 5 cut(s) 183, 544, 951, 1058, 1313
TasI AATT 5 cut(s) 573, 652, 795, 1352, 1464
TauI GCSGC 1 cut(s) 1083
TfiI GAWTC 5 cut(s) 191, 226, 243, 481, 714
Tru1I TTAA 3 cut(s) 110, 699, 1254
Tru9I TTAA 3 cut(s) 110, 699, 1254
TscAI CASTG 4 cut(s) 363, 514, 616, 1294
TseFI GTSAC 2 cut(s) 475, 590
TseI GCWGC 4 cut(s) 287, 353, 602, 1073
Tsp45I GTSAC 2 cut(s) 475, 590
TspDTI ATGAA 3 cut(s) 381, 619, 969
TspGWI ACGGA 2 cut(s) 789, 1032
TspRI CASTG 4 cut(s) 363, 514, 616, 1294
Van91I CCANNNNNTGG 1 cut(s) 1340
XapI RAATTY 1 cut(s) 1352
XceI RCATGY 2 cut(s) 326, 1173
XmiI GTMKAC 2 cut(s) 501, 1460
XmnI GAANNNNTTC 1 cut(s) 1240
XspI CTAG 3 cut(s) 1043, 1386, 1422
ZraI GACGTC 1 cut(s) 499
Zsp2I ATGCAT 2 cut(s) 1171, 1252
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.