Rh6AG513100

Belongs to the glycosyl hydrolase 17 family

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6A
Physical Location & Seq
Forward (+)
68310777 .. 68313804
3028 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6AG513100.1

Sequence Viewer

Length: 1446 bp
ATGGGGTCCTTTAGAGGTTCTGTTGTGGCTTTACTCTGCTTCAATGTTTTGGTGGGTTTTGTGTTTGGGATTGGAGTCAACTGGGGAACTCAAGATACACACGCTCTCCCTCCGGCTTCGGTTGTGAAGATGCTCAAGGATAATGGGATTCAGAAGGTTAAGCTTTTCGACGCAGATTATACCATCTTGAATGCTCTGCGCAAGTCTGGGCTTCAGGTCATGGTGGGAATACCCAATGAGATGCTTTATGGTTTGGCTAATAGTGTGGCTGCAGCTGAGAATTGGGTCTCCAAGAATATCTCCTCACATGTCTCCAATGGAGTAGATATTAGGTATGCTGCAGTGGGCAATGAACCGCTCTTGTCAACATTGAATGGAAGCTTTCTTACAACAATATTTCCTGCTCTGCAGAATATCCAGTCGGCTCTTATAAAAGCTGGTTTGAGCAATCAGGTTAAGGTCACTATTCCCCTCAACGCTGACGTCTATGACAGTGGTACTTCAACTAAACCTTCTGATGGTGACTTCCGGGCAGATACAAAGGACCTCATGGTGAACATTGTCAAGTTCTTGAGCGACAATGGCGCTCCATTCACTGTCAATATCTATCCCTTCATAAGTCTCTACAATGATCCCAGTTTCCCTGCAGAGTATGCCTTCTTTGACGGCTACTCAAGTCCCATTGATGACAATGGGAAAATCTATCAGAATGTGTTTGATGCAAACCATGATACACTAGTGTGGTCATTACAAAAGAATGGATTCAATAACTTGTCCATAATCGTTGGAGAGATTGGTTGGCCTACTGACGGGGACCGGAATGCAAATTTGCAGTATGCACAGCGGTTCAACCAGGGCTTCATGACCCGGATCAAGAACAATGTAGGCACTCCAATGAGACCTGGCCCCGTGGATGCTTACTTATTCAGCCTTGTTGATGAAGATGCCAAGAGCATTCAGCCAGGTAACTTCGAACGCCATTGGGGGTTGTTTTACTTTGATGGAACACCCAAGTATCAGCTCAGTTTGGGCACTGCAAATGCTTTAGTAGGAGTAAGTGGTGTACAATATCTGGCTAAGAAATGGTGCGTTCTGTCACCATCAGCTAATCTTGATGATCCCCAAGTTCCTCTAAGCGTGAGCTACGCTTGTGAACGTGCTGATTGCACAAGTCTTGGATATGAGACCTCGTGTGGAAACCTAGACATCAAAGGAAACATTTCATATGCGTTTAACAGTTACTATCAGGTCCATGATCAGCTGGACACTGCCTGCAAGTTTCCAAATCTATCAGCTGTCACCACCTCCGATCCATCAACTGGAGACTGCAAATTTAGGATCATGATTGAAGGTGACTATAGTTCAAGCAGTGTGAACGGCAGAGCTGGGGCTCTGGGAAAGCCTCTTTGTTCGATTTTGTTTGTGTTGCTGTTTACATTTCTGTAA

Protein Analysis

481

Amino Acids

52.34

Weight (kDa)

5.1

Isoelectric Point (pI)

27.04

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glyco_hydro_17 PF00332 24 - 342 3.6e-64 Glycosyl hydrolases family 17
X8 PF07983 361 - 429 1.4e-13 X8 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0012549)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 431
AatII GACGTC 1 cut(s) 486
Acc16I TGCGCA 1 cut(s) 200
AccB7I CCANNNNNTGG 1 cut(s) 1319
AccBSI CCGCTC 1 cut(s) 358
AciI CCGC 2 cut(s) 356, 844
AclWI GGATC 5 cut(s) 626, 878, 1112, 1304, 1346
AcsI RAATTY 2 cut(s) 826, 1331
AcuI CTGAAG 1 cut(s) 197
AcyI GRCGYC 1 cut(s) 483
AfaI GTAC 2 cut(s) 499, 1065
AfiI CCNNNNNNNGG 3 cut(s) 518, 809, 1319
AflIII ACRYGT 1 cut(s) 307
AgsI TTSAA 8 cut(s) 43, 190, 373, 504, 766, 850, 1349, 1365
AhlI ACTAGT 1 cut(s) 736
AjnI CCWGG 3 cut(s) 852, 901, 961
AleI CACNNNNGTG 1 cut(s) 739
Alw26I GTCTC 6 cut(s) 292, 316, 626, 892, 1178, 1317
AlwI GGATC 5 cut(s) 626, 878, 1112, 1304, 1346
AoxI GGCC 2 cut(s) 800, 904
ApeKI GCWGC 3 cut(s) 269, 272, 338
ApoI RAATTY 2 cut(s) 826, 1331
Asp700I GAANNNNTTC 2 cut(s) 761, 1219
AspLEI GCGC 2 cut(s) 201, 587
AspS9I GGNCC 5 cut(s) 6, 544, 814, 905, 1249
AsuC2I CCSGG 2 cut(s) 530, 868
AsuHPI GGTGA 5 cut(s) 533, 565, 1089, 1291, 1364
AsuII TTCGAA 1 cut(s) 972
AvaII GGWCC 4 cut(s) 6, 544, 814, 1249
BaeGI GKGCMC 1 cut(s) 1034
BaeI ACNNNNGTAYC 4 cut(s) 723, 756, 998, 1031
BanII GRGCYC 1 cut(s) 1393
BarI GAAGNNNNNNTAC 2 cut(s) 370, 402
BauI CACGAG 1 cut(s) 1189
BbvI GCAGC 3 cut(s) 256, 284, 325
BccI CCATC 5 cut(s) 191, 512, 995, 1108, 1321
BceAI ACGGC 2 cut(s) 682, 1393
BciT130I CCWGG 3 cut(s) 854, 903, 963
BclI TGATCA 1 cut(s) 1255
BcnI CCSGG 2 cut(s) 530, 868
BcoDI GTCTC 6 cut(s) 292, 316, 626, 892, 1178, 1317
BcuI ACTAGT 1 cut(s) 736
BfaI CTAG 2 cut(s) 737, 1202
BfmI CTRYAG 5 cut(s) 270, 339, 407, 645, 1357
BfoI RGCGCY 1 cut(s) 588
BisI GCNGC 3 cut(s) 270, 273, 339
BlsI GCNGC 3 cut(s) 271, 274, 340
Bme1390I CCNGG 5 cut(s) 530, 854, 868, 903, 963
Bme18I GGWCC 4 cut(s) 6, 544, 814, 1249
BmgT120I GGNCC 5 cut(s) 6, 544, 814, 905, 1249
BmiI GGNNCC 3 cut(s) 7, 815, 907
BmrFI CCNGG 5 cut(s) 530, 854, 868, 903, 963
BmrI ACTGGG 2 cut(s) 91, 630
BmsI GCATC 5 cut(s) 120, 231, 709, 904, 934
BmuI ACTGGG 2 cut(s) 91, 630
BpmI CTGGAG 1 cut(s) 1341
Bpu14I TTCGAA 1 cut(s) 972
BpuEI CTTGAG 4 cut(s) 75, 119, 592, 658
BpuMI CCSGG 2 cut(s) 530, 868
BsaHI GRCGYC 1 cut(s) 483
BsaI GGTCTC 3 cut(s) 292, 892, 1178
BsaJI CCNNGG 2 cut(s) 853, 909
BsaWI WCCGGW 1 cut(s) 816
BsaXI ACNNNNNCTCC 2 cut(s) 90, 120
Bsc4I CCNNNNNNNGG 3 cut(s) 518, 809, 1319
Bse1I ACTGG 4 cut(s) 86, 418, 636, 1324
Bse3DI GCAATG 1 cut(s) 355
BseBI CCWGG 3 cut(s) 854, 903, 963
BseDI CCNNGG 2 cut(s) 853, 909
BseGI GGATG 1 cut(s) 919
BseLI CCNNNNNNNGG 3 cut(s) 518, 809, 1319
BseMI GCAATG 1 cut(s) 355
BseMII CTCAG 2 cut(s) 267, 1036
BseNI ACTGG 4 cut(s) 86, 418, 636, 1324
BseRI GAGGAG 1 cut(s) 292
BseSI GKGCMC 1 cut(s) 1034
BseXI GCAGC 3 cut(s) 256, 284, 325
BseYI CCCAGC 1 cut(s) 1385
BshFI GGCC 2 cut(s) 802, 906
BsiSI CCGG 4 cut(s) 113, 529, 817, 868
BslFI GGGAC 2 cut(s) 663, 827
BslI CCNNNNNNNGG 3 cut(s) 518, 809, 1319
BsmAI GTCTC 6 cut(s) 292, 316, 626, 892, 1178, 1317
BsmFI GGGAC 2 cut(s) 663, 827
BsmI GAATGC 3 cut(s) 196, 826, 954
BsnI GGCC 2 cut(s) 802, 906
Bso31I GGTCTC 3 cut(s) 292, 892, 1178
Bsp119I TTCGAA 1 cut(s) 972
Bsp1286I GDGCHC 2 cut(s) 1034, 1393
Bsp1407I TGTACA 1 cut(s) 1063
Bsp143I GATC 6 cut(s) 631, 870, 1117, 1255, 1309, 1338
BspACI CCGC 2 cut(s) 356, 844
BspANI GGCC 2 cut(s) 802, 906
BspCNI CTCAG 2 cut(s) 268, 1035
BspHI TCATGA 2 cut(s) 861, 1341
BspLI GGNNCC 3 cut(s) 7, 815, 907
BspMAI CTGCAG 4 cut(s) 274, 343, 411, 649
BspPI GGATC 5 cut(s) 626, 878, 1112, 1304, 1346
BspT104I TTCGAA 1 cut(s) 972
BspTNI GGTCTC 3 cut(s) 292, 892, 1178
BsrBI CCGCTC 1 cut(s) 358
BsrDI GCAATG 1 cut(s) 355
BsrGI TGTACA 1 cut(s) 1063
BsrI ACTGG 4 cut(s) 86, 418, 636, 1324
BssECI CCNNGG 2 cut(s) 853, 909
BssMI GATC 6 cut(s) 631, 870, 1117, 1255, 1309, 1338
BssNI GRCGYC 1 cut(s) 483
BssSI CACGAG 1 cut(s) 1189
Bst2BI CACGAG 1 cut(s) 1189
Bst2UI CCWGG 3 cut(s) 854, 903, 963
Bst4CI ACNGT 3 cut(s) 494, 598, 1238
BstACI GRCGYC 1 cut(s) 483
BstAPI GCANNNNNTGC 1 cut(s) 653
BstAUI TGTACA 1 cut(s) 1063
BstBI TTCGAA 1 cut(s) 972
BstC8I GCNNGC 1 cut(s) 1273
BstDEI CTNAG 4 cut(s) 276, 1022, 1077, 1133
BstDSI CCRYGG 1 cut(s) 909
BstF5I GGATG 1 cut(s) 919
BstH2I RGCGCY 1 cut(s) 588
BstHHI GCGC 2 cut(s) 201, 587
BstKTI GATC 6 cut(s) 634, 873, 1120, 1258, 1312, 1341
BstMAI GTCTC 6 cut(s) 292, 316, 626, 892, 1178, 1317
BstMBI GATC 6 cut(s) 631, 870, 1117, 1255, 1309, 1338
BstMWI GCNNNNNNNGC 2 cut(s) 582, 653
BstNI CCWGG 3 cut(s) 854, 903, 963
BstNSI RCATGY 1 cut(s) 311
BstSCI CCNGG 5 cut(s) 528, 852, 866, 901, 961
BstSFI CTRYAG 5 cut(s) 270, 339, 407, 645, 1357
BstSLI GKGCMC 1 cut(s) 1034
BstV1I GCAGC 3 cut(s) 256, 284, 325
BsuRI GGCC 2 cut(s) 802, 906
BtgI CCRYGG 1 cut(s) 909
BtsCI GGATG 1 cut(s) 919
BtsI GCAGTG 4 cut(s) 348, 1032, 1266, 1375
BtsIMutI CAGTG 6 cut(s) 348, 499, 594, 1032, 1266, 1375
Cac8I GCNNGC 1 cut(s) 1273
CciI TCATGA 2 cut(s) 861, 1341
CfoI GCGC 2 cut(s) 201, 587
Cfr13I GGNCC 5 cut(s) 6, 544, 814, 905, 1249
CseI GACGC 1 cut(s) 179
Csp6I GTAC 2 cut(s) 498, 1064
CviAII CATG 7 cut(s) 220, 308, 550, 728, 862, 1253, 1342
CviQI GTAC 2 cut(s) 498, 1064
DdeI CTNAG 4 cut(s) 276, 1022, 1077, 1133
DpnI GATC 6 cut(s) 633, 872, 1119, 1257, 1311, 1340
DpnII GATC 6 cut(s) 631, 870, 1117, 1255, 1309, 1338
Eco24I GRGCYC 1 cut(s) 1393
Eco31I GGTCTC 3 cut(s) 292, 892, 1178
Eco47I GGWCC 4 cut(s) 6, 544, 814, 1249
Eco57I CTGAAG 1 cut(s) 197
EcoO109I RGGNCCY 2 cut(s) 6, 544
EcoRII CCWGG 3 cut(s) 852, 901, 961
EcoT38I GRGCYC 1 cut(s) 1393
FaeI CATG 7 cut(s) 223, 311, 553, 731, 865, 1256, 1345
FaqI GGGAC 2 cut(s) 663, 827
FatI CATG 7 cut(s) 219, 307, 549, 727, 861, 1252, 1341
FauNDI CATATG 1 cut(s) 1225
FbaI TGATCA 1 cut(s) 1255
Fnu4HI GCNGC 3 cut(s) 270, 273, 339
FokI GGATG 1 cut(s) 926
FriOI GRGCYC 1 cut(s) 1393
Fsp4HI GCNGC 3 cut(s) 270, 273, 339
FspBI CTAG 2 cut(s) 737, 1202
FspI TGCGCA 1 cut(s) 200
GlaI GCGC 2 cut(s) 200, 586
GluI GCNGC 3 cut(s) 270, 273, 339
GsaI CCCAGC 1 cut(s) 1389
GsuI CTGGAG 1 cut(s) 1341
HaeII RGCGCY 1 cut(s) 588
HaeIII GGCC 2 cut(s) 802, 906
HapII CCGG 4 cut(s) 113, 529, 817, 868
HgaI GACGC 1 cut(s) 179
HhaI GCGC 2 cut(s) 201, 587
Hin1I GRCGYC 1 cut(s) 483
Hin1II CATG 7 cut(s) 223, 311, 553, 731, 865, 1256, 1345
Hin6I GCGC 2 cut(s) 199, 585
HinP1I GCGC 2 cut(s) 199, 585
HincII GTYRAC 2 cut(s) 79, 366
HindII GTYRAC 2 cut(s) 79, 366
HindIII AAGCTT 2 cut(s) 161, 379
HinfI GANTC 3 cut(s) 75, 148, 762
HpaII CCGG 4 cut(s) 113, 529, 817, 868
HphI GGTGA 5 cut(s) 533, 565, 1089, 1291, 1364
Hpy166II GTNNAC 7 cut(s) 79, 366, 556, 1064, 1154, 1375, 1434
Hpy188I TCNGA 4 cut(s) 153, 517, 708, 1309
Hpy188III TCNNGA 7 cut(s) 92, 187, 571, 862, 874, 1112, 1342
Hpy8I GTNNAC 7 cut(s) 79, 366, 556, 1064, 1154, 1375, 1434
Hpy99I CGWCG 1 cut(s) 173
HpyAV CCTTC 5 cut(s) 148, 522, 622, 667, 1343
HpyCH4III ACNGT 3 cut(s) 494, 598, 1238
HpyCH4IV ACGT 2 cut(s) 483, 1156
HpyF10VI GCNNNNNNNGC 2 cut(s) 582, 653
HpyF3I CTNAG 4 cut(s) 276, 1022, 1077, 1133
HpySE526I ACGT 2 cut(s) 483, 1156
Hsp92I GRCGYC 1 cut(s) 483
Hsp92II CATG 7 cut(s) 223, 311, 553, 731, 865, 1256, 1345
HspAI GCGC 2 cut(s) 199, 585
Ksp22I TGATCA 1 cut(s) 1255
Kzo9I GATC 6 cut(s) 631, 870, 1117, 1255, 1309, 1338
LmnI GCTCC 1 cut(s) 592
Lsp1109I GCAGC 3 cut(s) 256, 284, 325
LweI GCATC 5 cut(s) 120, 231, 709, 904, 934
MaeI CTAG 2 cut(s) 737, 1202
MaeII ACGT 2 cut(s) 483, 1156
MaeIII GTNAC 7 cut(s) 460, 521, 965, 1095, 1238, 1297, 1352
MalI GATC 6 cut(s) 633, 872, 1119, 1257, 1311, 1340
MbiI CCGCTC 1 cut(s) 358
MboI GATC 6 cut(s) 631, 870, 1117, 1255, 1309, 1338
MboII GAAGA 2 cut(s) 139, 953
MhlI GDGCHC 2 cut(s) 1034, 1393
MluCI AATT 3 cut(s) 280, 826, 1331
MlyI GAGTC 1 cut(s) 84
MmeI TCCRAC 1 cut(s) 766
MnlI CCTC 9 cut(s) 8, 120, 313, 482, 557, 1140, 1198, 1315, 1413
MroXI GAANNNNTTC 2 cut(s) 761, 1219
MseI TTAA 3 cut(s) 159, 456, 1233
MslI CAYNNNNRTG 2 cut(s) 739, 893
MspA1I CMGCKG 4 cut(s) 275, 844, 1261, 1295
MspI CCGG 4 cut(s) 113, 529, 817, 868
MspR9I CCNGG 5 cut(s) 530, 854, 868, 903, 963
Mva1269I GAATGC 3 cut(s) 196, 826, 954
MvaI CCWGG 3 cut(s) 854, 903, 963
MwoI GCNNNNNNNGC 2 cut(s) 582, 653
NciI CCSGG 2 cut(s) 530, 868
NdeI CATATG 1 cut(s) 1225
NdeII GATC 6 cut(s) 631, 870, 1117, 1255, 1309, 1338
NlaIII CATG 7 cut(s) 223, 311, 553, 731, 865, 1256, 1345
NlaIV GGNNCC 3 cut(s) 7, 815, 907
NmuCI GTSAC 5 cut(s) 460, 521, 1095, 1297, 1352
NsbI TGCGCA 1 cut(s) 200
NspI RCATGY 1 cut(s) 311
NspV TTCGAA 1 cut(s) 972
OliI CACNNNNGTG 1 cut(s) 739
PagI TCATGA 2 cut(s) 861, 1341
PciI ACATGT 1 cut(s) 307
PctI GAATGC 3 cut(s) 196, 826, 954
PdmI GAANNNNTTC 2 cut(s) 761, 1219
PfeI GAWTC 2 cut(s) 148, 762
PflMI CCANNNNNTGG 1 cut(s) 1319
PkrI GCNGC 3 cut(s) 271, 274, 340
PleI GAGTC 1 cut(s) 83
PpsI GAGTC 1 cut(s) 83
PpuMI RGGWCCY 2 cut(s) 6, 544
PscI ACATGT 1 cut(s) 307
PsiI TTATAA 1 cut(s) 431
Psp5II RGGWCCY 2 cut(s) 6, 544
Psp6I CCWGG 3 cut(s) 852, 901, 961
PspFI CCCAGC 1 cut(s) 1385
PspGI CCWGG 3 cut(s) 852, 901, 961
PspN4I GGNNCC 3 cut(s) 7, 815, 907
PspPI GGNCC 5 cut(s) 6, 544, 814, 905, 1249
PspPPI RGGWCCY 2 cut(s) 6, 544
PsrI GAACNNNNNNTAC 2 cut(s) 79, 111
PstI CTGCAG 4 cut(s) 274, 343, 411, 649
PvuII CAGCTG 3 cut(s) 275, 1261, 1295
RsaI GTAC 2 cut(s) 499, 1065
RsaNI GTAC 2 cut(s) 498, 1064
RseI CAYNNNNRTG 2 cut(s) 739, 893
SaqAI TTAA 3 cut(s) 159, 456, 1233
SatI GCNGC 3 cut(s) 270, 273, 339
Sau3AI GATC 6 cut(s) 631, 870, 1117, 1255, 1309, 1338
Sau96I GGNCC 5 cut(s) 6, 544, 814, 905, 1249
SchI GAGTC 1 cut(s) 84
ScrFI CCNGG 5 cut(s) 530, 854, 868, 903, 963
SduI GDGCHC 2 cut(s) 1034, 1393
SfaNI GCATC 5 cut(s) 120, 231, 709, 904, 934
SfcI CTRYAG 5 cut(s) 270, 339, 407, 645, 1357
SfuI TTCGAA 1 cut(s) 972
SinI GGWCC 4 cut(s) 6, 544, 814, 1249
SmiMI CAYNNNNRTG 2 cut(s) 739, 893
SmlI CTYRAG 4 cut(s) 90, 134, 571, 673
SmoI CTYRAG 4 cut(s) 90, 134, 571, 673
SpeI ACTAGT 1 cut(s) 736
Sse9I AATT 3 cut(s) 280, 826, 1331
SsiI CCGC 2 cut(s) 356, 844
SspI AATATT 1 cut(s) 396
SspMI CTAG 2 cut(s) 737, 1202
StyD4I CCNGG 5 cut(s) 528, 852, 866, 901, 961
TaaI ACNGT 3 cut(s) 494, 598, 1238
TaiI ACGT 2 cut(s) 486, 1159
TaqI TCGA 3 cut(s) 168, 972, 1412
TasI AATT 3 cut(s) 280, 826, 1331
TatI WGTACW 1 cut(s) 1063
TfiI GAWTC 2 cut(s) 148, 762
Tru1I TTAA 3 cut(s) 159, 456, 1233
Tru9I TTAA 3 cut(s) 159, 456, 1233
TscAI CASTG 6 cut(s) 348, 499, 601, 1039, 1273, 1375
TseFI GTSAC 5 cut(s) 460, 521, 1095, 1297, 1352
TseI GCWGC 3 cut(s) 269, 272, 338
Tsp45I GTSAC 5 cut(s) 460, 521, 1095, 1297, 1352
TspDTI ATGAA 5 cut(s) 366, 604, 850, 954, 1212
TspRI CASTG 6 cut(s) 348, 499, 601, 1039, 1273, 1375
Van91I CCANNNNNTGG 1 cut(s) 1319
VpaK11BI GGWCC 4 cut(s) 6, 544, 814, 1249
XapI RAATTY 2 cut(s) 826, 1331
XceI RCATGY 1 cut(s) 311
XmnI GAANNNNTTC 2 cut(s) 761, 1219
XspI CTAG 2 cut(s) 737, 1202
ZraI GACGTC 1 cut(s) 484
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.