Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb2

Orthogroup ID

OG0014669

Physical Location & Seq

Genomic Coordinates Forward (+)

23694662 .. 23695764

Gene Structure 1103 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_2g30640.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 378 bp

ATGGATAAGCAGCAACAAGAAAACATACCATCTTCATCACCATCTTCTCCAGGAAGATCAGCAGGAGGAGAAGCAAAGAGAGAAGATGCAGCAGCAGGCTCAGGAATTAGAGCAGGGCCGCCATGTCCGACTTTCGTAGGCAAGCATAGAATGGCTGCTGCTATTTCCCTTCTCCATACTCAAATAAACATTATTCAGGAAGAGCTTAACGAACTCGAAACAGTAGGCGAGTCCTCCATTGTCTGCAAAGAACTCGTTGCAAGCATCGAATCGGTTTCTGATCCCCTGCTTCCATGGAGTAAAGGAGCACCTGAAGTGGGATGGGATAGGTGGTTCAGAGGAGCACACAACACCAGAAGTAACAACCGCTGGATCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0044464 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

G-gamma

Protein Analysis

126

Amino Acids

13.5

Weight (kDa)

5.9

Isoelectric Point (pI)

71.32

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014669)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g30640 FvH4_2g30640 FvH4_2g30640
malus_domestica	MD08G1133500.v1.1 MD15G1110600.v1.1
prunus_persica	Prupe.1G462900_v2.0.a1 Prupe.2G330000_v2.0.a1
pyrus_communis	pycom15g10100
rosa_chinensis	RchiOBHm_Chr6g0312271
rosa_laevigata	RLG00000010337
rosa_multiflora	Rmu_ssc0000424.1_g000004
rosa_rugosa	Rorug06G0394500 Rorug06G0394600
rosa_samantha	Rh6BG522800 Rh6CG528500 Rh6DG514000
rosa_wichuraiana	Rw6G044510

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	119, 367
AclWI	GGATC	1 cut(s)	275
AcuI	CTGAAG	1 cut(s)	333
AfiI	CCNNNNNNNGG	1 cut(s)	317
AjnI	CCWGG	1 cut(s)	49
AloI	GAACNNNNNNTCC	2 cut(s)	317, 349
AluBI	AGCT	1 cut(s)	205
AluI	AGCT	1 cut(s)	205
Alw21I	GWGCWC	2 cut(s)	310, 346
AlwI	GGATC	1 cut(s)	275
AoxI	GGCC	1 cut(s)	116
ApeKI	GCWGC	5 cut(s)	10, 89, 92, 155, 158
AspS9I	GGNCC	1 cut(s)	116
AsuHPI	GGTGA	1 cut(s)	30
Bbv12I	GWGCWC	2 cut(s)	310, 346
BbvI	GCAGC	5 cut(s)	22, 101, 104, 142, 145
BccI	CCATC	3 cut(s)	37, 49, 315
BcgI	CGANNNNNNTGC	2 cut(s)	235, 269
BciT130I	CCWGG	1 cut(s)	51
BisI	GCNGC	6 cut(s)	11, 90, 93, 119, 156, 159
BlsI	GCNGC	6 cut(s)	12, 91, 94, 120, 157, 160
Bme1390I	CCNGG	1 cut(s)	51
BmgT120I	GGNCC	1 cut(s)	116
BmrFI	CCNGG	1 cut(s)	51
BmsI	GCATC	2 cut(s)	76, 273
BpmI	CTGGAG	1 cut(s)	33
Bpu10I	CCTNAGC	1 cut(s)	100
BsaJI	CCNNGG	1 cut(s)	293
Bsc4I	CCNNNNNNNGG	1 cut(s)	317
BseBI	CCWGG	1 cut(s)	51
BseDI	CCNNGG	1 cut(s)	293
BseGI	GGATG	1 cut(s)	326
BseLI	CCNNNNNNNGG	1 cut(s)	317
BseMII	CTCAG	1 cut(s)	114
BseRI	GAGGAG	2 cut(s)	81, 354
BseXI	GCAGC	5 cut(s)	22, 101, 104, 142, 145
BshFI	GGCC	1 cut(s)	118
BsiHKAI	GWGCWC	2 cut(s)	310, 346
BslI	CCNNNNNNNGG	1 cut(s)	317
BsnI	GGCC	1 cut(s)	118
Bsp1286I	GDGCHC	2 cut(s)	310, 346
Bsp143I	GATC	3 cut(s)	56, 280, 372
Bsp19I	CCATGG	1 cut(s)	293
BspACI	CCGC	2 cut(s)	119, 367
BspANI	GGCC	1 cut(s)	118
BspCNI	CTCAG	1 cut(s)	113
BspPI	GGATC	1 cut(s)	275
BspQI	GCTCTTC	1 cut(s)	195
BssECI	CCNNGG	1 cut(s)	293
BssMI	GATC	3 cut(s)	56, 280, 372
BssT1I	CCWWGG	1 cut(s)	293
Bst2UI	CCWGG	1 cut(s)	51
Bst4CI	ACNGT	1 cut(s)	223
Bst6I	CTCTTC	1 cut(s)	195
BstC8I	GCNNGC	3 cut(s)	97, 143, 262
BstDEI	CTNAG	1 cut(s)	100
BstDSI	CCRYGG	1 cut(s)	293
BstF5I	GGATG	1 cut(s)	326
BstKTI	GATC	3 cut(s)	59, 283, 375
BstMBI	GATC	3 cut(s)	56, 280, 372
BstNI	CCWGG	1 cut(s)	51
BstSCI	CCNGG	1 cut(s)	49
BstV1I	GCAGC	5 cut(s)	22, 101, 104, 142, 145
BstX2I	RGATCY	1 cut(s)	372
BstYI	RGATCY	1 cut(s)	372
BsuRI	GGCC	1 cut(s)	118
BtgI	CCRYGG	1 cut(s)	293
BtsCI	GGATG	1 cut(s)	326
Cac8I	GCNNGC	3 cut(s)	97, 143, 262
Cfr13I	GGNCC	1 cut(s)	116
CviAII	CATG	2 cut(s)	123, 294
CviJI	RGCY	4 cut(s)	99, 118, 155, 205
CviKI_1	RGCY	4 cut(s)	99, 118, 155, 205
DdeI	CTNAG	1 cut(s)	100
DpnI	GATC	3 cut(s)	58, 282, 374
DpnII	GATC	3 cut(s)	56, 280, 372
Eam1104I	CTCTTC	1 cut(s)	195
EarI	CTCTTC	1 cut(s)	195
Eco130I	CCWWGG	1 cut(s)	293
Eco57I	CTGAAG	1 cut(s)	333
EcoRII	CCWGG	1 cut(s)	49
EcoT14I	CCWWGG	1 cut(s)	293
ErhI	CCWWGG	1 cut(s)	293
FaeI	CATG	2 cut(s)	126, 297
FaiI	YATR	5 cut(s)	26, 124, 147, 177, 295
FatI	CATG	2 cut(s)	122, 293
Fnu4HI	GCNGC	6 cut(s)	11, 90, 93, 119, 156, 159
FokI	GGATG	1 cut(s)	333
Fsp4HI	GCNGC	6 cut(s)	11, 90, 93, 119, 156, 159
GluI	GCNGC	6 cut(s)	11, 90, 93, 119, 156, 159
GsuI	CTGGAG	1 cut(s)	33
HaeIII	GGCC	1 cut(s)	118
Hin1II	CATG	2 cut(s)	126, 297
HinfI	GANTC	2 cut(s)	230, 269
HphI	GGTGA	1 cut(s)	30
Hpy188I	TCNGA	3 cut(s)	129, 280, 338
Hpy188III	TCNNGA	2 cut(s)	102, 197
HpyAV	CCTTC	1 cut(s)	179
HpyCH4III	ACNGT	1 cut(s)	223
HpyCH4V	TGCA	3 cut(s)	89, 246, 260
HpyF3I	CTNAG	1 cut(s)	100
Hsp92II	CATG	2 cut(s)	126, 297
Kzo9I	GATC	3 cut(s)	56, 280, 372
LguI	GCTCTTC	1 cut(s)	195
LmnI	GCTCC	2 cut(s)	305, 341
Lsp1109I	GCAGC	5 cut(s)	22, 101, 104, 142, 145
LweI	GCATC	2 cut(s)	76, 273
MaeIII	GTNAC	1 cut(s)	359
MalI	GATC	3 cut(s)	58, 282, 374
MboI	GATC	3 cut(s)	56, 280, 372
MboII	GAAGA	5 cut(s)	24, 36, 66, 95, 212
MflI	RGATCY	1 cut(s)	372
MhlI	GDGCHC	2 cut(s)	310, 346
MluCI	AATT	1 cut(s)	105
MlyI	GAGTC	1 cut(s)	239
MmeI	TCCRAC	1 cut(s)	152
MnlI	CCTC	3 cut(s)	59, 244, 332
MseI	TTAA	1 cut(s)	207
MspA1I	CMGCKG	1 cut(s)	369
MspR9I	CCNGG	1 cut(s)	51
MvaI	CCWGG	1 cut(s)	51
NcoI	CCATGG	1 cut(s)	293
NdeII	GATC	3 cut(s)	56, 280, 372
NlaIII	CATG	2 cut(s)	126, 297
PciSI	GCTCTTC	1 cut(s)	195
PfeI	GAWTC	1 cut(s)	269
PfoI	TCCNGGA	1 cut(s)	49
PkrI	GCNGC	6 cut(s)	12, 91, 94, 120, 157, 160
PleI	GAGTC	1 cut(s)	238
PpsI	GAGTC	1 cut(s)	238
Psp6I	CCWGG	1 cut(s)	49
PspGI	CCWGG	1 cut(s)	49
PspPI	GGNCC	1 cut(s)	116
PsuI	RGATCY	1 cut(s)	372
SapI	GCTCTTC	1 cut(s)	195
SaqAI	TTAA	1 cut(s)	207
SatI	GCNGC	6 cut(s)	11, 90, 93, 119, 156, 159
Sau3AI	GATC	3 cut(s)	56, 280, 372
Sau96I	GGNCC	1 cut(s)	116
SchI	GAGTC	1 cut(s)	239
ScrFI	CCNGG	1 cut(s)	51
SduI	GDGCHC	2 cut(s)	310, 346
SetI	ASST	3 cut(s)	207, 313, 332
SfaNI	GCATC	2 cut(s)	76, 273
Sse9I	AATT	1 cut(s)	105
SsiI	CCGC	2 cut(s)	119, 367
StyD4I	CCNGG	1 cut(s)	49
StyI	CCWWGG	1 cut(s)	293
TaaI	ACNGT	1 cut(s)	223
TaqI	TCGA	2 cut(s)	216, 267
TasI	AATT	1 cut(s)	105
TauI	GCSGC	1 cut(s)	121
TfiI	GAWTC	1 cut(s)	269
Tru1I	TTAA	1 cut(s)	207
Tru9I	TTAA	1 cut(s)	207
TseI	GCWGC	5 cut(s)	10, 89, 92, 155, 158
TspDTI	ATGAA	1 cut(s)	24

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.