Rorug06G0394600

Guanine nucleotide-binding protein subunit gamma

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000006
OG0014669
Physical Location & Seq
Forward (+)
54026478 .. 54028411
1934 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug06G0394600.1

Sequence Viewer

Length: 630 bp
ATGTCGTTTAGCTCGTCTCCGTCATCTGCCAACTCCTCTCCGTTTCTCTTCTCCAAATCCAAGGCTTTCGCCGCTGCTGATAACAGAACTCTGAGTCCTCCAACCGTCTCCTTCAGCTCTCGGTTCAGAGCTTCTTCTTCTGAAGTTCCTGATTTCCTCTCGGCCAATTGGCTGGAATCTCGCAAGAAGAGACCGTTTGGGCCAAGATTAAATTTTAGCGCAGAAGAAGCTGTTCAGCACCAGCTAGATGCGTTGAAGTACAATGACCAACCCCGCCCAGATTATGGCATTGAGGTCATGTACAGGTTTGCCGGGTTTGATCCTTTTGAGAGGTCCACCTACTTTGGGCCATTCTTTGATTTGGGGCAGTTTGAACGGTTCAGGCGAATTTTTCACCATTCGACCTATAGGGTGTTACTAGCTCACAAGGAGAGGGAGATATTGAGCAGTTTATTTGTAGAGGAGAATCGATATAAGCAGCGGATTTGGATACGAGGAAGTCGGCCAGAGGAAGAAGAAACATTCCAGTTCACAATGGTTCAGAGGGTTGGTGGCTCTTGGGATGGTTATTGGTTGACAGAGAGTGTACTTCATGATGGAGATGCTTTTTCTGGCGGTTTAGCATACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0044464 GO:0071944
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
G-gamma

Protein Analysis

209

Amino Acids

24.19

Weight (kDa)

6.99

Isoelectric Point (pI)

59.37

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014669)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g30640 FvH4_2g30640 FvH4_2g30640
malus_domestica MD08G1133500.v1.1 MD15G1110600.v1.1
prunus_persica Prupe.1G462900_v2.0.a1 Prupe.2G330000_v2.0.a1
pyrus_communis pycom15g10100
rosa_chinensis RchiOBHm_Chr6g0312271
rosa_laevigata RLG00000010337
rosa_multiflora Rmu_ssc0000424.1_g000004
rosa_rugosa Rorug06G0394500 Rorug06G0394600
rosa_samantha Rh6BG522800 Rh6CG528500 Rh6DG514000
rosa_wichuraiana Rw6G044510

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 284
AciI CCGC 4 cut(s) 72, 274, 481, 615
AclWI GGATC 1 cut(s) 314
AcoI YGGCCR 2 cut(s) 162, 503
AcsI RAATTY 2 cut(s) 211, 387
AcuI CTGAAG 2 cut(s) 97, 162
AfaI GTAC 3 cut(s) 260, 302, 588
AfiI CCNNNNNNNGG 2 cut(s) 284, 345
AgsI TTSAA 2 cut(s) 256, 374
AloI GAACNNNNNNTCC 2 cut(s) 79, 111
AluBI AGCT 6 cut(s) 12, 117, 131, 230, 244, 422
AluI AGCT 6 cut(s) 12, 117, 131, 230, 244, 422
Alw26I GTCTC 3 cut(s) 21, 112, 184
AlwI GGATC 1 cut(s) 314
AoxI GGCC 4 cut(s) 162, 200, 347, 503
ApeKI GCWGC 2 cut(s) 74, 478
ApoI RAATTY 2 cut(s) 211, 387
Asp700I GAANNNNTTC 1 cut(s) 231
AspLEI GCGC 1 cut(s) 221
AspS9I GGNCC 3 cut(s) 200, 333, 347
AsuC2I CCSGG 1 cut(s) 313
AsuHPI GGTGA 1 cut(s) 386
AvaII GGWCC 1 cut(s) 333
BbvI GCAGC 2 cut(s) 61, 490
BccI CCATC 2 cut(s) 557, 590
BciVI GTATCC 1 cut(s) 483
BcnI CCSGG 1 cut(s) 313
BcoDI GTCTC 3 cut(s) 21, 112, 184
BfaI CTAG 2 cut(s) 245, 419
BfmI CTRYAG 1 cut(s) 406
BfuI GTATCC 1 cut(s) 483
BisI GCNGC 3 cut(s) 72, 75, 479
BlsI GCNGC 3 cut(s) 73, 76, 480
Bme1390I CCNGG 1 cut(s) 313
Bme18I GGWCC 1 cut(s) 333
BmgT120I GGNCC 3 cut(s) 200, 333, 347
BmrFI CCNGG 1 cut(s) 313
BmsI GCATC 2 cut(s) 238, 592
BpuMI CCSGG 1 cut(s) 313
Bsa29I ATCGAT 1 cut(s) 469
BsaI GGTCTC 1 cut(s) 184
BsaJI CCNNGG 1 cut(s) 60
Bsc4I CCNNNNNNNGG 2 cut(s) 284, 345
Bse1I ACTGG 1 cut(s) 526
BseCI ATCGAT 1 cut(s) 469
BseDI CCNNGG 1 cut(s) 60
BseGI GGATG 1 cut(s) 568
BseLI CCNNNNNNNGG 2 cut(s) 284, 345
BseMII CTCAG 1 cut(s) 83
BseNI ACTGG 1 cut(s) 526
BseRI GAGGAG 2 cut(s) 25, 476
BseXI GCAGC 2 cut(s) 61, 490
BshFI GGCC 4 cut(s) 164, 202, 349, 505
BshVI ATCGAT 1 cut(s) 469
BsiSI CCGG 1 cut(s) 312
BslI CCNNNNNNNGG 2 cut(s) 284, 345
BsmAI GTCTC 3 cut(s) 21, 112, 184
BsmBI CGTCTC 2 cut(s) 21, 112
BsnI GGCC 4 cut(s) 164, 202, 349, 505
Bso31I GGTCTC 1 cut(s) 184
Bsp1407I TGTACA 1 cut(s) 300
Bsp143I GATC 1 cut(s) 319
BspACI CCGC 4 cut(s) 72, 274, 481, 615
BspANI GGCC 4 cut(s) 164, 202, 349, 505
BspCNI CTCAG 1 cut(s) 84
BspDI ATCGAT 1 cut(s) 469
BspHI TCATGA 1 cut(s) 592
BspPI GGATC 1 cut(s) 314
BspTNI GGTCTC 1 cut(s) 184
BsrGI TGTACA 1 cut(s) 300
BsrI ACTGG 1 cut(s) 526
BssECI CCNNGG 1 cut(s) 60
BssMI GATC 1 cut(s) 319
BssT1I CCWWGG 1 cut(s) 60
Bst4CI ACNGT 3 cut(s) 106, 195, 378
Bst6I CTCTTC 2 cut(s) 53, 182
BstAUI TGTACA 1 cut(s) 300
BstDEI CTNAG 1 cut(s) 92
BstF5I GGATG 1 cut(s) 568
BstHHI GCGC 1 cut(s) 221
BstKTI GATC 1 cut(s) 322
BstMAI GTCTC 3 cut(s) 21, 112, 184
BstMBI GATC 1 cut(s) 319
BstMWI GCNNNNNNNGC 2 cut(s) 71, 227
BstSCI CCNGG 1 cut(s) 311
BstSFI CTRYAG 1 cut(s) 406
BstV1I GCAGC 2 cut(s) 61, 490
BstXI CCANNNNNNTGG 1 cut(s) 172
Bsu15I ATCGAT 1 cut(s) 469
BsuI GTATCC 1 cut(s) 483
BsuRI GGCC 4 cut(s) 164, 202, 349, 505
BsuTUI ATCGAT 1 cut(s) 469
BtsCI GGATG 1 cut(s) 568
CciI TCATGA 1 cut(s) 592
CfoI GCGC 1 cut(s) 221
Cfr13I GGNCC 3 cut(s) 200, 333, 347
ClaI ATCGAT 1 cut(s) 469
Csp6I GTAC 3 cut(s) 259, 301, 587
CspCI CAANNNNNGTGG 2 cut(s) 325, 360
CviAII CATG 2 cut(s) 298, 593
CviQI GTAC 3 cut(s) 259, 301, 587
DdeI CTNAG 1 cut(s) 92
DpnI GATC 1 cut(s) 321
DpnII GATC 1 cut(s) 319
EaeI YGGCCR 2 cut(s) 162, 503
Eam1104I CTCTTC 2 cut(s) 53, 182
EarI CTCTTC 2 cut(s) 53, 182
Eco130I CCWWGG 1 cut(s) 60
Eco31I GGTCTC 1 cut(s) 184
Eco47I GGWCC 1 cut(s) 333
Eco57I CTGAAG 2 cut(s) 97, 162
EcoT14I CCWWGG 1 cut(s) 60
ErhI CCWWGG 1 cut(s) 60
Esp3I CGTCTC 2 cut(s) 21, 112
FaeI CATG 2 cut(s) 301, 596
FaiI YATR 6 cut(s) 285, 299, 408, 474, 594, 625
FatI CATG 2 cut(s) 297, 592
FauI CCCGC 1 cut(s) 281
Fnu4HI GCNGC 3 cut(s) 72, 75, 479
FokI GGATG 1 cut(s) 575
Fsp4HI GCNGC 3 cut(s) 72, 75, 479
FspBI CTAG 2 cut(s) 245, 419
GlaI GCGC 1 cut(s) 220
GluI GCNGC 3 cut(s) 72, 75, 479
HaeIII GGCC 4 cut(s) 164, 202, 349, 505
HapII CCGG 1 cut(s) 312
HhaI GCGC 1 cut(s) 221
Hin1II CATG 2 cut(s) 301, 596
Hin6I GCGC 1 cut(s) 219
HinP1I GCGC 1 cut(s) 219
HincII GTYRAC 1 cut(s) 576
HindII GTYRAC 1 cut(s) 576
HinfI GANTC 3 cut(s) 94, 176, 466
HpaII CCGG 1 cut(s) 312
HphI GGTGA 1 cut(s) 386
Hpy166II GTNNAC 4 cut(s) 336, 531, 576, 587
Hpy188I TCNGA 4 cut(s) 93, 128, 142, 543
Hpy188III TCNNGA 2 cut(s) 149, 593
Hpy8I GTNNAC 4 cut(s) 336, 531, 576, 587
HpyAV CCTTC 1 cut(s) 121
HpyCH4III ACNGT 3 cut(s) 106, 195, 378
HpyF10VI GCNNNNNNNGC 2 cut(s) 71, 227
HpyF3I CTNAG 1 cut(s) 92
Hsp92II CATG 2 cut(s) 301, 596
HspAI GCGC 1 cut(s) 219
Kzo9I GATC 1 cut(s) 319
Lsp1109I GCAGC 2 cut(s) 61, 490
LweI GCATC 2 cut(s) 238, 592
MaeI CTAG 2 cut(s) 245, 419
MaeIII GTNAC 1 cut(s) 414
MalI GATC 1 cut(s) 321
MboI GATC 1 cut(s) 319
MboII GAAGA 7 cut(s) 40, 126, 129, 199, 236, 524, 527
MfeI CAATTG 1 cut(s) 166
MluCI AATT 3 cut(s) 166, 211, 387
MlyI GAGTC 1 cut(s) 103
MmeI TCCRAC 1 cut(s) 125
MroXI GAANNNNTTC 1 cut(s) 231
MseI TTAA 1 cut(s) 209
MspA1I CMGCKG 2 cut(s) 74, 481
MspI CCGG 1 cut(s) 312
MspR9I CCNGG 1 cut(s) 313
MunI CAATTG 1 cut(s) 166
MwoI GCNNNNNNNGC 2 cut(s) 71, 227
NciI CCSGG 1 cut(s) 313
NdeII GATC 1 cut(s) 319
NlaIII CATG 2 cut(s) 301, 596
NmeAIII GCCGAG 1 cut(s) 140
PagI TCATGA 1 cut(s) 592
PcsI WCGNNNNNNNCGW 2 cut(s) 11, 382
PdmI GAANNNNTTC 1 cut(s) 231
PfeI GAWTC 2 cut(s) 176, 466
PflMI CCANNNNNTGG 1 cut(s) 284
PkrI GCNGC 3 cut(s) 73, 76, 480
PleI GAGTC 1 cut(s) 102
PpsI GAGTC 1 cut(s) 102
PspPI GGNCC 3 cut(s) 200, 333, 347
RsaI GTAC 3 cut(s) 260, 302, 588
RsaNI GTAC 3 cut(s) 259, 301, 587
SaqAI TTAA 1 cut(s) 209
SatI GCNGC 3 cut(s) 72, 75, 479
Sau3AI GATC 1 cut(s) 319
Sau96I GGNCC 3 cut(s) 200, 333, 347
SchI GAGTC 1 cut(s) 103
ScrFI CCNGG 1 cut(s) 313
SfaNI GCATC 2 cut(s) 238, 592
SfcI CTRYAG 1 cut(s) 406
SinI GGWCC 1 cut(s) 333
Sse9I AATT 3 cut(s) 166, 211, 387
SsiI CCGC 4 cut(s) 72, 274, 481, 615
SspMI CTAG 2 cut(s) 245, 419
StyD4I CCNGG 1 cut(s) 311
StyI CCWWGG 1 cut(s) 60
TaaI ACNGT 3 cut(s) 106, 195, 378
TaqI TCGA 2 cut(s) 401, 469
TasI AATT 3 cut(s) 166, 211, 387
TatI WGTACW 3 cut(s) 258, 300, 586
TauI GCSGC 1 cut(s) 74
TfiI GAWTC 2 cut(s) 176, 466
Tru1I TTAA 1 cut(s) 209
Tru9I TTAA 1 cut(s) 209
TseI GCWGC 2 cut(s) 74, 478
TspDTI ATGAA 1 cut(s) 581
TspGWI ACGGA 2 cut(s) 9, 30
Van91I CCANNNNNTGG 1 cut(s) 284
VpaK11BI GGWCC 1 cut(s) 333
XapI RAATTY 2 cut(s) 211, 387
XmnI GAANNNNTTC 1 cut(s) 231
XspI CTAG 2 cut(s) 245, 419
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.