Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr3

Orthogroup ID

OG0014669

Physical Location & Seq

Genomic Coordinates Forward (+)

799039 .. 799700

Gene Structure 662 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000010337

Sequence Viewer

CDS Protein Promoter (2k)

Length: 378 bp

ATGGATAAGCAGCAAGAAGAAAACATATCATCTTCTCCAGGAAGATCAGGAGGAGGAGGAGGAGGAGCAAAGAGAGAAGATGCAGCAGCAGCAGCAGGCTCAGGAATCAGAGCAGGGCCGCCATGTCCGACTTTCGTAGGCAAGCATAGAATGGCTGCTGCTATTTCCCATCTCCATACTCAAATCAACATTATTCAGGAAGAGCTTAACGAGCTCGAAACAGTAGGCGAATCCTCCTTTGTCTGCAAAGAACTTGTTGCGAGCATTGAATCTGTTTCTGATCCCCTGCTTCCATGGAGTAAAGGAGCACCTGAAGCGGGCTGGGATAGGTGGTTCAGAGGAGCACACAACACCAGAAATAACAATCGCTGGATCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0044464 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

G-gamma

Protein Analysis

126

Amino Acids

13.36

Weight (kDa)

6.06

Isoelectric Point (pI)

67.18

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014669)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g30640 FvH4_2g30640 FvH4_2g30640
malus_domestica	MD08G1133500.v1.1 MD15G1110600.v1.1
prunus_persica	Prupe.1G462900_v2.0.a1 Prupe.2G330000_v2.0.a1
pyrus_communis	pycom15g10100
rosa_chinensis	RchiOBHm_Chr6g0312271
rosa_laevigata	RLG00000010337
rosa_multiflora	Rmu_ssc0000424.1_g000004
rosa_rugosa	Rorug06G0394500 Rorug06G0394600
rosa_samantha	Rh6BG522800 Rh6CG528500 Rh6DG514000
rosa_wichuraiana	Rw6G044510

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	119, 317
AclWI	GGATC	1 cut(s)	275
AcuI	CTGAAG	1 cut(s)	333
AfiI	CCNNNNNNNGG	1 cut(s)	317
AgsI	TTSAA	1 cut(s)	269
AjnI	CCWGG	1 cut(s)	37
AloI	GAACNNNNNNTCC	2 cut(s)	317, 349
AluBI	AGCT	2 cut(s)	205, 214
AluI	AGCT	2 cut(s)	205, 214
Alw21I	GWGCWC	3 cut(s)	216, 310, 346
AlwI	GGATC	1 cut(s)	275
AoxI	GGCC	1 cut(s)	116
ApeKI	GCWGC	7 cut(s)	10, 83, 86, 89, 92, 155, 158
AspS9I	GGNCC	1 cut(s)	116
BanII	GRGCYC	1 cut(s)	216
Bbv12I	GWGCWC	3 cut(s)	216, 310, 346
BbvI	GCAGC	7 cut(s)	22, 95, 98, 101, 104, 142, 145
BccI	CCATC	1 cut(s)	177
BciT130I	CCWGG	1 cut(s)	39
BisI	GCNGC	8 cut(s)	11, 84, 87, 90, 93, 119, 156, 159
BlsI	GCNGC	8 cut(s)	12, 85, 88, 91, 94, 120, 157, 160
Bme1390I	CCNGG	1 cut(s)	39
BmgT120I	GGNCC	1 cut(s)	116
BmrFI	CCNGG	1 cut(s)	39
BmsI	GCATC	1 cut(s)	70
BpmI	CTGGAG	1 cut(s)	21
Bpu10I	CCTNAGC	1 cut(s)	100
BsaJI	CCNNGG	1 cut(s)	293
Bsc4I	CCNNNNNNNGG	1 cut(s)	317
BseBI	CCWGG	1 cut(s)	39
BseDI	CCNNGG	1 cut(s)	293
BseLI	CCNNNNNNNGG	1 cut(s)	317
BseMII	CTCAG	1 cut(s)	114
BseRI	GAGGAG	6 cut(s)	66, 69, 72, 75, 78, 354
BseXI	GCAGC	7 cut(s)	22, 95, 98, 101, 104, 142, 145
BseYI	CCCAGC	1 cut(s)	321
BshFI	GGCC	1 cut(s)	118
BsiHKAI	GWGCWC	3 cut(s)	216, 310, 346
BslI	CCNNNNNNNGG	1 cut(s)	317
BsnI	GGCC	1 cut(s)	118
Bsp1286I	GDGCHC	3 cut(s)	216, 310, 346
Bsp143I	GATC	3 cut(s)	44, 280, 372
Bsp19I	CCATGG	1 cut(s)	293
BspACI	CCGC	2 cut(s)	119, 317
BspANI	GGCC	1 cut(s)	118
BspCNI	CTCAG	1 cut(s)	113
BspPI	GGATC	1 cut(s)	275
BspQI	GCTCTTC	1 cut(s)	195
BssECI	CCNNGG	1 cut(s)	293
BssMI	GATC	3 cut(s)	44, 280, 372
BssT1I	CCWWGG	1 cut(s)	293
Bst2UI	CCWGG	1 cut(s)	39
Bst4CI	ACNGT	1 cut(s)	223
Bst6I	CTCTTC	1 cut(s)	195
BstC8I	GCNNGC	4 cut(s)	97, 143, 262, 319
BstDEI	CTNAG	1 cut(s)	100
BstDSI	CCRYGG	1 cut(s)	293
BstKTI	GATC	3 cut(s)	47, 283, 375
BstMBI	GATC	3 cut(s)	44, 280, 372
BstMWI	GCNNNNNNNGC	4 cut(s)	89, 92, 211, 314
BstNI	CCWGG	1 cut(s)	39
BstSCI	CCNGG	1 cut(s)	37
BstV1I	GCAGC	7 cut(s)	22, 95, 98, 101, 104, 142, 145
BstX2I	RGATCY	1 cut(s)	372
BstYI	RGATCY	1 cut(s)	372
BsuRI	GGCC	1 cut(s)	118
BtgI	CCRYGG	1 cut(s)	293
Cac8I	GCNNGC	4 cut(s)	97, 143, 262, 319
Cfr13I	GGNCC	1 cut(s)	116
CviAII	CATG	2 cut(s)	123, 294
CviJI	RGCY	6 cut(s)	99, 118, 155, 205, 214, 321
CviKI_1	RGCY	6 cut(s)	99, 118, 155, 205, 214, 321
DdeI	CTNAG	1 cut(s)	100
DpnI	GATC	3 cut(s)	46, 282, 374
DpnII	GATC	3 cut(s)	44, 280, 372
Eam1104I	CTCTTC	1 cut(s)	195
EarI	CTCTTC	1 cut(s)	195
Ecl136II	GAGCTC	1 cut(s)	214
Eco130I	CCWWGG	1 cut(s)	293
Eco24I	GRGCYC	1 cut(s)	216
Eco53kI	GAGCTC	1 cut(s)	214
Eco57I	CTGAAG	1 cut(s)	333
EcoICRI	GAGCTC	1 cut(s)	214
EcoRII	CCWGG	1 cut(s)	37
EcoT14I	CCWWGG	1 cut(s)	293
EcoT38I	GRGCYC	1 cut(s)	216
ErhI	CCWWGG	1 cut(s)	293
FaeI	CATG	2 cut(s)	126, 297
FaiI	YATR	5 cut(s)	26, 124, 147, 177, 295
FatI	CATG	2 cut(s)	122, 293
FauI	CCCGC	1 cut(s)	310
Fnu4HI	GCNGC	8 cut(s)	11, 84, 87, 90, 93, 119, 156, 159
FriOI	GRGCYC	1 cut(s)	216
Fsp4HI	GCNGC	8 cut(s)	11, 84, 87, 90, 93, 119, 156, 159
GluI	GCNGC	8 cut(s)	11, 84, 87, 90, 93, 119, 156, 159
GsaI	CCCAGC	1 cut(s)	325
GsuI	CTGGAG	1 cut(s)	21
HaeIII	GGCC	1 cut(s)	118
Hin1II	CATG	2 cut(s)	126, 297
HinfI	GANTC	3 cut(s)	105, 230, 269
Hpy188I	TCNGA	4 cut(s)	110, 129, 280, 338
Hpy188III	TCNNGA	3 cut(s)	48, 102, 197
HpyCH4III	ACNGT	1 cut(s)	223
HpyCH4V	TGCA	2 cut(s)	83, 246
HpyF10VI	GCNNNNNNNGC	4 cut(s)	89, 92, 211, 314
HpyF3I	CTNAG	1 cut(s)	100
Hsp92II	CATG	2 cut(s)	126, 297
Kzo9I	GATC	3 cut(s)	44, 280, 372
LguI	GCTCTTC	1 cut(s)	195
LmnI	GCTCC	3 cut(s)	65, 305, 341
Lsp1109I	GCAGC	7 cut(s)	22, 95, 98, 101, 104, 142, 145
LweI	GCATC	1 cut(s)	70
MalI	GATC	3 cut(s)	46, 282, 374
MboI	GATC	3 cut(s)	44, 280, 372
MboII	GAAGA	5 cut(s)	24, 29, 54, 89, 212
MflI	RGATCY	1 cut(s)	372
MhlI	GDGCHC	3 cut(s)	216, 310, 346
MmeI	TCCRAC	1 cut(s)	152
MnlI	CCTC	7 cut(s)	44, 47, 50, 53, 56, 244, 332
MseI	TTAA	1 cut(s)	207
MspR9I	CCNGG	1 cut(s)	39
MvaI	CCWGG	1 cut(s)	39
MwoI	GCNNNNNNNGC	4 cut(s)	89, 92, 211, 314
NcoI	CCATGG	1 cut(s)	293
NdeII	GATC	3 cut(s)	44, 280, 372
NlaIII	CATG	2 cut(s)	126, 297
PciSI	GCTCTTC	1 cut(s)	195
PfeI	GAWTC	3 cut(s)	105, 230, 269
PfoI	TCCNGGA	1 cut(s)	37
PkrI	GCNGC	8 cut(s)	12, 85, 88, 91, 94, 120, 157, 160
Psp124BI	GAGCTC	1 cut(s)	216
Psp6I	CCWGG	1 cut(s)	37
PspFI	CCCAGC	1 cut(s)	321
PspGI	CCWGG	1 cut(s)	37
PspPI	GGNCC	1 cut(s)	116
PsuI	RGATCY	1 cut(s)	372
SacI	GAGCTC	1 cut(s)	216
SapI	GCTCTTC	1 cut(s)	195
SaqAI	TTAA	1 cut(s)	207
SatI	GCNGC	8 cut(s)	11, 84, 87, 90, 93, 119, 156, 159
Sau3AI	GATC	3 cut(s)	44, 280, 372
Sau96I	GGNCC	1 cut(s)	116
ScrFI	CCNGG	1 cut(s)	39
SduI	GDGCHC	3 cut(s)	216, 310, 346
SetI	ASST	4 cut(s)	207, 216, 313, 332
SfaNI	GCATC	1 cut(s)	70
SsiI	CCGC	2 cut(s)	119, 317
SstI	GAGCTC	1 cut(s)	216
StyD4I	CCNGG	1 cut(s)	37
StyI	CCWWGG	1 cut(s)	293
TaaI	ACNGT	1 cut(s)	223
TaqI	TCGA	1 cut(s)	216
TauI	GCSGC	1 cut(s)	121
TfiI	GAWTC	3 cut(s)	105, 230, 269
Tru1I	TTAA	1 cut(s)	207
Tru9I	TTAA	1 cut(s)	207
TseI	GCWGC	7 cut(s)	10, 83, 86, 89, 92, 155, 158

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.