Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr6

Orthogroup ID

OG0014669

Physical Location & Seq

Genomic Coordinates Reverse (-)

67622038 .. 67622674

Gene Structure 637 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw6G044510.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 369 bp

ATGGATAAGCAGCAAGAAGAAAACATATCATCTTCTCCAGGAAGATCAGGAGGAGGAGGAGCAAAGAGAGAAGATGCAGCAGCAACAGGCTCAGGAATCAGAGCAGGGCCGCCATGTCCGACTTTCGTAGGCAAGCATAGGATGGCTGCTGCTATTTCCCATCTCCATACTCAGATCAACATTATTCAGGAAGAGCTTAACGAGCTCGAAACAGTAGGCGAATCCTCCTTTGTCTGCAAAGAACTTGTTGCGAGCATTGAATCTGTTTCTGATCCCCTACTTCCATGGAGTAAAGGAGCACCTGAAGCAGGCTGGGATAGGTGGTTCAGAGGAGCACACAACACCAGAAATAACAATCGCTGGATCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0044464 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

G-gamma

Protein Analysis

122

Amino Acids

13.21

Weight (kDa)

6.06

Isoelectric Point (pI)

65.87

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014669)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g30640 FvH4_2g30640 FvH4_2g30640
malus_domestica	MD08G1133500.v1.1 MD15G1110600.v1.1
prunus_persica	Prupe.1G462900_v2.0.a1 Prupe.2G330000_v2.0.a1
pyrus_communis	pycom15g10100
rosa_chinensis	RchiOBHm_Chr6g0312271
rosa_laevigata	RLG00000010337
rosa_multiflora	Rmu_ssc0000424.1_g000004
rosa_rugosa	Rorug06G0394500 Rorug06G0394600
rosa_samantha	Rh6BG522800 Rh6CG528500 Rh6DG514000
rosa_wichuraiana	Rw6G044510

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	110
AclWI	GGATC	1 cut(s)	266
AcuI	CTGAAG	1 cut(s)	324
AfiI	CCNNNNNNNGG	1 cut(s)	308
AgsI	TTSAA	1 cut(s)	260
AjnI	CCWGG	1 cut(s)	37
AloI	GAACNNNNNNTCC	2 cut(s)	308, 340
AluBI	AGCT	2 cut(s)	196, 205
AluI	AGCT	2 cut(s)	196, 205
Alw21I	GWGCWC	3 cut(s)	207, 301, 337
AlwI	GGATC	1 cut(s)	266
AoxI	GGCC	1 cut(s)	107
ApeKI	GCWGC	5 cut(s)	10, 77, 80, 146, 149
AspS9I	GGNCC	1 cut(s)	107
BanII	GRGCYC	1 cut(s)	207
Bbv12I	GWGCWC	3 cut(s)	207, 301, 337
BbvI	GCAGC	5 cut(s)	22, 89, 92, 133, 136
BccI	CCATC	2 cut(s)	136, 168
BciT130I	CCWGG	1 cut(s)	39
BisI	GCNGC	6 cut(s)	11, 78, 81, 110, 147, 150
BlsI	GCNGC	6 cut(s)	12, 79, 82, 111, 148, 151
Bme1390I	CCNGG	1 cut(s)	39
BmgT120I	GGNCC	1 cut(s)	107
BmrFI	CCNGG	1 cut(s)	39
BmsI	GCATC	1 cut(s)	64
BpmI	CTGGAG	1 cut(s)	21
Bpu10I	CCTNAGC	1 cut(s)	91
BsaJI	CCNNGG	1 cut(s)	284
Bsc4I	CCNNNNNNNGG	1 cut(s)	308
BseBI	CCWGG	1 cut(s)	39
BseDI	CCNNGG	1 cut(s)	284
BseGI	GGATG	1 cut(s)	147
BseLI	CCNNNNNNNGG	1 cut(s)	308
BseMII	CTCAG	2 cut(s)	105, 185
BseRI	GAGGAG	4 cut(s)	66, 69, 72, 345
BseXI	GCAGC	5 cut(s)	22, 89, 92, 133, 136
BseYI	CCCAGC	1 cut(s)	312
BshFI	GGCC	1 cut(s)	109
BsiHKAI	GWGCWC	3 cut(s)	207, 301, 337
BslI	CCNNNNNNNGG	1 cut(s)	308
BsnI	GGCC	1 cut(s)	109
Bsp1286I	GDGCHC	3 cut(s)	207, 301, 337
Bsp143I	GATC	4 cut(s)	44, 174, 271, 363
Bsp19I	CCATGG	1 cut(s)	284
BspACI	CCGC	1 cut(s)	110
BspANI	GGCC	1 cut(s)	109
BspCNI	CTCAG	2 cut(s)	104, 184
BspPI	GGATC	1 cut(s)	266
BspQI	GCTCTTC	1 cut(s)	186
BssECI	CCNNGG	1 cut(s)	284
BssMI	GATC	4 cut(s)	44, 174, 271, 363
BssT1I	CCWWGG	1 cut(s)	284
Bst2UI	CCWGG	1 cut(s)	39
Bst4CI	ACNGT	1 cut(s)	214
Bst6I	CTCTTC	1 cut(s)	186
BstC8I	GCNNGC	3 cut(s)	134, 253, 310
BstDEI	CTNAG	2 cut(s)	91, 171
BstDSI	CCRYGG	1 cut(s)	284
BstENI	CCTNNNNNAGG	1 cut(s)	306
BstF5I	GGATG	1 cut(s)	147
BstKTI	GATC	4 cut(s)	47, 177, 274, 366
BstMBI	GATC	4 cut(s)	44, 174, 271, 363
BstMWI	GCNNNNNNNGC	2 cut(s)	202, 305
BstNI	CCWGG	1 cut(s)	39
BstSCI	CCNGG	1 cut(s)	37
BstV1I	GCAGC	5 cut(s)	22, 89, 92, 133, 136
BstX2I	RGATCY	1 cut(s)	363
BstYI	RGATCY	1 cut(s)	363
BsuRI	GGCC	1 cut(s)	109
BtgI	CCRYGG	1 cut(s)	284
BtsCI	GGATG	1 cut(s)	147
Cac8I	GCNNGC	3 cut(s)	134, 253, 310
Cfr13I	GGNCC	1 cut(s)	107
CviAII	CATG	2 cut(s)	114, 285
CviJI	RGCY	6 cut(s)	90, 109, 146, 196, 205, 312
CviKI_1	RGCY	6 cut(s)	90, 109, 146, 196, 205, 312
DdeI	CTNAG	2 cut(s)	91, 171
DpnI	GATC	4 cut(s)	46, 176, 273, 365
DpnII	GATC	4 cut(s)	44, 174, 271, 363
Eam1104I	CTCTTC	1 cut(s)	186
EarI	CTCTTC	1 cut(s)	186
Ecl136II	GAGCTC	1 cut(s)	205
Eco130I	CCWWGG	1 cut(s)	284
Eco24I	GRGCYC	1 cut(s)	207
Eco53kI	GAGCTC	1 cut(s)	205
Eco57I	CTGAAG	1 cut(s)	324
EcoICRI	GAGCTC	1 cut(s)	205
EcoNI	CCTNNNNNAGG	1 cut(s)	306
EcoRII	CCWGG	1 cut(s)	37
EcoT14I	CCWWGG	1 cut(s)	284
EcoT38I	GRGCYC	1 cut(s)	207
ErhI	CCWWGG	1 cut(s)	284
FaeI	CATG	2 cut(s)	117, 288
FaiI	YATR	5 cut(s)	26, 115, 138, 168, 286
FatI	CATG	2 cut(s)	113, 284
Fnu4HI	GCNGC	6 cut(s)	11, 78, 81, 110, 147, 150
FokI	GGATG	1 cut(s)	154
FriOI	GRGCYC	1 cut(s)	207
Fsp4HI	GCNGC	6 cut(s)	11, 78, 81, 110, 147, 150
GluI	GCNGC	6 cut(s)	11, 78, 81, 110, 147, 150
GsaI	CCCAGC	1 cut(s)	316
GsuI	CTGGAG	1 cut(s)	21
HaeIII	GGCC	1 cut(s)	109
Hin1II	CATG	2 cut(s)	117, 288
HinfI	GANTC	3 cut(s)	96, 221, 260
Hpy188I	TCNGA	5 cut(s)	101, 120, 174, 271, 329
Hpy188III	TCNNGA	3 cut(s)	48, 93, 188
HpyCH4III	ACNGT	1 cut(s)	214
HpyCH4V	TGCA	2 cut(s)	77, 237
HpyF10VI	GCNNNNNNNGC	2 cut(s)	202, 305
HpyF3I	CTNAG	2 cut(s)	91, 171
Hsp92II	CATG	2 cut(s)	117, 288
Kzo9I	GATC	4 cut(s)	44, 174, 271, 363
LguI	GCTCTTC	1 cut(s)	186
LmnI	GCTCC	3 cut(s)	59, 296, 332
Lsp1109I	GCAGC	5 cut(s)	22, 89, 92, 133, 136
LweI	GCATC	1 cut(s)	64
MalI	GATC	4 cut(s)	46, 176, 273, 365
MboI	GATC	4 cut(s)	44, 174, 271, 363
MboII	GAAGA	5 cut(s)	24, 29, 54, 83, 203
MflI	RGATCY	1 cut(s)	363
MhlI	GDGCHC	3 cut(s)	207, 301, 337
MmeI	TCCRAC	1 cut(s)	143
MnlI	CCTC	5 cut(s)	44, 47, 50, 235, 323
MseI	TTAA	1 cut(s)	198
MspR9I	CCNGG	1 cut(s)	39
MvaI	CCWGG	1 cut(s)	39
MwoI	GCNNNNNNNGC	2 cut(s)	202, 305
NcoI	CCATGG	1 cut(s)	284
NdeII	GATC	4 cut(s)	44, 174, 271, 363
NlaIII	CATG	2 cut(s)	117, 288
PciSI	GCTCTTC	1 cut(s)	186
PfeI	GAWTC	3 cut(s)	96, 221, 260
PfoI	TCCNGGA	1 cut(s)	37
PkrI	GCNGC	6 cut(s)	12, 79, 82, 111, 148, 151
Psp124BI	GAGCTC	1 cut(s)	207
Psp6I	CCWGG	1 cut(s)	37
PspFI	CCCAGC	1 cut(s)	312
PspGI	CCWGG	1 cut(s)	37
PspPI	GGNCC	1 cut(s)	107
PsuI	RGATCY	1 cut(s)	363
SacI	GAGCTC	1 cut(s)	207
SapI	GCTCTTC	1 cut(s)	186
SaqAI	TTAA	1 cut(s)	198
SatI	GCNGC	6 cut(s)	11, 78, 81, 110, 147, 150
Sau3AI	GATC	4 cut(s)	44, 174, 271, 363
Sau96I	GGNCC	1 cut(s)	107
ScrFI	CCNGG	1 cut(s)	39
SduI	GDGCHC	3 cut(s)	207, 301, 337
SetI	ASST	4 cut(s)	198, 207, 304, 323
SfaNI	GCATC	1 cut(s)	64
SsiI	CCGC	1 cut(s)	110
SstI	GAGCTC	1 cut(s)	207
StyD4I	CCNGG	1 cut(s)	37
StyI	CCWWGG	1 cut(s)	284
TaaI	ACNGT	1 cut(s)	214
TaqI	TCGA	1 cut(s)	207
TauI	GCSGC	1 cut(s)	112
TfiI	GAWTC	3 cut(s)	96, 221, 260
Tru1I	TTAA	1 cut(s)	198
Tru9I	TTAA	1 cut(s)	198
TseI	GCWGC	5 cut(s)	10, 77, 80, 146, 149
XagI	CCTNNNNNAGG	1 cut(s)	306

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.