Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb2

Orthogroup ID

OG0006771

Physical Location & Seq

Genomic Coordinates Forward (+)

24056457 .. 24057804

Gene Structure 1348 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_2g31360.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 570 bp

ATGGAGAGAAGAATATTTGTAGGAGTTCGAAAGAATACACATATTAAGCGTAATAAGAAGAAGCTGCTCATCAGAGTGTTAGATTATTTCACTTCTGATTCTTACATGTTTGCTCCTTTAATTTCTCGTCCACCTTCTGCGTTTACCTCATCCATCAAGAAGTCAGTCACAGGAGTGAAAGTAAAAAAACCTGTTATTAGAGAAAAGAAGAAGTTGCTCAAGAATGTTGGTGACTATCTCAAGTCAAACTGTTATATGTATGCGCCATTGCTTGCTCCACCTCGTTCAATTATTAGGTCTTCACGGTACGTTGAGAGGGTCACCACCACCTTGGAAGTTTCAAAGAGGAAAGTAATTTTGAAAGGCTATAAACCAAATGAAAAAATGGGAGACTTGGAGGATCAAGCTTCCAAGGGCTCTCTTCCTGAAGAAATCGTTAAGCAGCGAGCATCAGTGCAGCAAGGAACAGTCAAGCACAAGGAAACGGTGAAGCTGATGGTTCACAATAGTTGTCGCTCATCTATGCCAGGCAGGACTGTTGGAAAGAATCAAAATGTGGTAGTCAACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

190

Amino Acids

21.52

Weight (kDa)

10.41

Isoelectric Point (pI)

53.09

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0006771)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G57790 AT5G57790 AT5G57790 AT5G57790
fragaria_vesca	FvH4_2g31360
malus_domestica	MD16G1262100.v1.1
prunus_persica	Prupe.1G097900_v2.0.a1 Prupe.1G097900_v2.0.a1 Prupe.1G097900_v2.0.a1 Prupe.1G097900_v2.0.a1 Prupe.1G097900_v2.0.a1 Prupe.1G097900_v2.0.a1 Prupe.1G097900_v2.0.a1 Prupe.1G097900_v2.0.a1
pyrus_communis	pycom16g23030
rosa_chinensis	RchiOBHm_Chr4g0404981
rosa_laevigata	RLG00000008890
rosa_multiflora	Rmu_sc0000358.1_g000004
rosa_roxburghii	Rroxscaffold_5G00349130
rosa_rugosa	Rorug04G0050700 Rorug04G0050800
rosa_samantha	Rh4AG126500 Rh4BG120700 Rh4CG134800 Rh4DG120900
rosa_wichuraiana	Rw4G010260

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	408
AcuI	CTGAAG	1 cut(s)	447
AfaI	GTAC	1 cut(s)	308
AflIII	ACRYGT	1 cut(s)	105
AgsI	TTSAA	3 cut(s)	288, 342, 361
AjnI	CCWGG	1 cut(s)	526
AleI	CACNNNNGTG	1 cut(s)	173
AluBI	AGCT	3 cut(s)	64, 407, 493
AluI	AGCT	3 cut(s)	64, 407, 493
Alw26I	GTCTC	1 cut(s)	384
AlwI	GGATC	1 cut(s)	408
ApeKI	GCWGC	3 cut(s)	64, 442, 457
AspLEI	GCGC	1 cut(s)	265
AsuHPI	GGTGA	3 cut(s)	242, 313, 499
AsuII	TTCGAA	1 cut(s)	28
BanII	GRGCYC	1 cut(s)	419
BbsI	GAAGAC	1 cut(s)	291
BbvI	GCAGC	3 cut(s)	51, 454, 469
BccI	CCATC	2 cut(s)	161, 490
BciT130I	CCWGG	1 cut(s)	528
BcoDI	GTCTC	1 cut(s)	384
BisI	GCNGC	3 cut(s)	65, 443, 458
BlsI	GCNGC	3 cut(s)	66, 444, 459
Bme1390I	CCNGG	1 cut(s)	528
BmrFI	CCNGG	1 cut(s)	528
BmsI	GCATC	1 cut(s)	458
BpiI	GAAGAC	1 cut(s)	291
Bpu14I	TTCGAA	1 cut(s)	28
BpuEI	CTTGAG	2 cut(s)	203, 224
BsaJI	CCNNGG	2 cut(s)	330, 411
BsaXI	ACNNNNNCTCC	2 cut(s)	165, 195
Bse3DI	GCAATG	1 cut(s)	266
BseBI	CCWGG	1 cut(s)	528
BseDI	CCNNGG	2 cut(s)	330, 411
BseGI	GGATG	1 cut(s)	149
BseMI	GCAATG	1 cut(s)	266
BseXI	GCAGC	3 cut(s)	51, 454, 469
BsgI	GTGCAG	1 cut(s)	476
BsmAI	GTCTC	1 cut(s)	384
Bsp119I	TTCGAA	1 cut(s)	28
Bsp1286I	GDGCHC	1 cut(s)	419
Bsp143I	GATC	1 cut(s)	400
BspPI	GGATC	1 cut(s)	408
BspT104I	TTCGAA	1 cut(s)	28
BsrDI	GCAATG	1 cut(s)	266
BssECI	CCNNGG	2 cut(s)	330, 411
BssMI	GATC	1 cut(s)	400
BssT1I	CCWWGG	2 cut(s)	330, 411
Bst2UI	CCWGG	1 cut(s)	528
Bst4CI	ACNGT	5 cut(s)	251, 306, 469, 487, 538
Bst6I	CTCTTC	1 cut(s)	426
BstBI	TTCGAA	1 cut(s)	28
BstC8I	GCNNGC	2 cut(s)	273, 447
BstEII	GGTNACC	1 cut(s)	319
BstF5I	GGATG	1 cut(s)	149
BstHHI	GCGC	1 cut(s)	265
BstKTI	GATC	1 cut(s)	403
BstMAI	GTCTC	1 cut(s)	384
BstMBI	GATC	1 cut(s)	400
BstNI	CCWGG	1 cut(s)	528
BstNSI	RCATGY	1 cut(s)	109
BstPI	GGTNACC	1 cut(s)	319
BstSCI	CCNGG	1 cut(s)	526
BstV1I	GCAGC	3 cut(s)	51, 454, 469
BstV2I	GAAGAC	1 cut(s)	291
BstXI	CCANNNNNNTGG	1 cut(s)	331
BtsCI	GGATG	1 cut(s)	149
BtsIMutI	CAGTG	1 cut(s)	459
Cac8I	GCNNGC	2 cut(s)	273, 447
CfoI	GCGC	1 cut(s)	265
Csp6I	GTAC	1 cut(s)	307
CviAII	CATG	1 cut(s)	106
CviJI	RGCY	5 cut(s)	64, 366, 407, 417, 493
CviKI_1	RGCY	5 cut(s)	64, 366, 407, 417, 493
CviQI	GTAC	1 cut(s)	307
DpnI	GATC	1 cut(s)	402
DpnII	GATC	1 cut(s)	400
Eam1104I	CTCTTC	1 cut(s)	426
EarI	CTCTTC	1 cut(s)	426
Eco130I	CCWWGG	2 cut(s)	330, 411
Eco24I	GRGCYC	1 cut(s)	419
Eco57I	CTGAAG	1 cut(s)	447
Eco91I	GGTNACC	1 cut(s)	319
EcoO65I	GGTNACC	1 cut(s)	319
EcoRII	CCWGG	1 cut(s)	526
EcoT14I	CCWWGG	2 cut(s)	330, 411
EcoT38I	GRGCYC	1 cut(s)	419
ErhI	CCWWGG	2 cut(s)	330, 411
FaeI	CATG	1 cut(s)	109
FaiI	YATR	7 cut(s)	42, 107, 255, 257, 261, 369, 524
FatI	CATG	1 cut(s)	105
Fnu4HI	GCNGC	3 cut(s)	65, 443, 458
FokI	GGATG	1 cut(s)	136
FriOI	GRGCYC	1 cut(s)	419
Fsp4HI	GCNGC	3 cut(s)	65, 443, 458
GlaI	GCGC	1 cut(s)	264
GluI	GCNGC	3 cut(s)	65, 443, 458
HhaI	GCGC	1 cut(s)	265
Hin1II	CATG	1 cut(s)	109
Hin6I	GCGC	1 cut(s)	263
HinP1I	GCGC	1 cut(s)	263
HincII	GTYRAC	1 cut(s)	565
HindII	GTYRAC	1 cut(s)	565
HindIII	AAGCTT	1 cut(s)	405
HinfI	GANTC	2 cut(s)	98, 547
HphI	GGTGA	3 cut(s)	242, 313, 499
Hpy166II	GTNNAC	4 cut(s)	131, 144, 502, 565
Hpy188I	TCNGA	2 cut(s)	74, 97
Hpy188III	TCNNGA	3 cut(s)	157, 220, 425
Hpy8I	GTNNAC	4 cut(s)	131, 144, 502, 565
HpyAV	CCTTC	1 cut(s)	144
HpyCH4III	ACNGT	5 cut(s)	251, 306, 469, 487, 538
HpyCH4IV	ACGT	1 cut(s)	309
HpyCH4V	TGCA	1 cut(s)	457
HpySE526I	ACGT	1 cut(s)	309
Hsp92II	CATG	1 cut(s)	109
HspAI	GCGC	1 cut(s)	263
Kzo9I	GATC	1 cut(s)	400
LmnI	GCTCC	2 cut(s)	118, 280
LpnPI	CCDG	6 cut(s)	156, 204, 438, 513, 517, 540
Lsp1109I	GCAGC	3 cut(s)	51, 454, 469
LweI	GCATC	1 cut(s)	458
MaeII	ACGT	1 cut(s)	309
MaeIII	GTNAC	3 cut(s)	166, 230, 319
MalI	GATC	1 cut(s)	402
MboI	GATC	1 cut(s)	400
MboII	GAAGA	6 cut(s)	21, 70, 220, 291, 413, 440
MhlI	GDGCHC	1 cut(s)	419
MluCI	AATT	3 cut(s)	120, 288, 354
MmeI	TCCRAC	1 cut(s)	520
MnlI	CCTC	5 cut(s)	157, 291, 309, 339, 391
MseI	TTAA	3 cut(s)	45, 119, 438
MslI	CAYNNNNRTG	2 cut(s)	74, 173
MspR9I	CCNGG	1 cut(s)	528
MvaI	CCWGG	1 cut(s)	528
NdeII	GATC	1 cut(s)	400
NlaIII	CATG	1 cut(s)	109
NmuCI	GTSAC	3 cut(s)	166, 230, 319
NspI	RCATGY	1 cut(s)	109
NspV	TTCGAA	1 cut(s)	28
OliI	CACNNNNGTG	1 cut(s)	173
PciI	ACATGT	1 cut(s)	105
PfeI	GAWTC	2 cut(s)	98, 547
PkrI	GCNGC	3 cut(s)	66, 444, 459
PscI	ACATGT	1 cut(s)	105
Psp6I	CCWGG	1 cut(s)	526
PspEI	GGTNACC	1 cut(s)	319
PspGI	CCWGG	1 cut(s)	526
RsaI	GTAC	1 cut(s)	308
RsaNI	GTAC	1 cut(s)	307
RseI	CAYNNNNRTG	2 cut(s)	74, 173
SaqAI	TTAA	3 cut(s)	45, 119, 438
SatI	GCNGC	3 cut(s)	65, 443, 458
Sau3AI	GATC	1 cut(s)	400
ScrFI	CCNGG	1 cut(s)	528
SduI	GDGCHC	1 cut(s)	419
SfaNI	GCATC	1 cut(s)	458
SfuI	TTCGAA	1 cut(s)	28
SmiMI	CAYNNNNRTG	2 cut(s)	74, 173
SmlI	CTYRAG	2 cut(s)	218, 239
SmoI	CTYRAG	2 cut(s)	218, 239
Sse9I	AATT	3 cut(s)	120, 288, 354
SspI	AATATT	1 cut(s)	15
StyD4I	CCNGG	1 cut(s)	526
StyI	CCWWGG	2 cut(s)	330, 411
TaaI	ACNGT	5 cut(s)	251, 306, 469, 487, 538
TaiI	ACGT	1 cut(s)	312
TaqI	TCGA	1 cut(s)	28
TasI	AATT	3 cut(s)	120, 288, 354
TfiI	GAWTC	2 cut(s)	98, 547
Tru1I	TTAA	3 cut(s)	45, 119, 438
Tru9I	TTAA	3 cut(s)	45, 119, 438
TscAI	CASTG	1 cut(s)	459
TseFI	GTSAC	3 cut(s)	166, 230, 319
TseI	GCWGC	3 cut(s)	64, 442, 457
Tsp45I	GTSAC	3 cut(s)	166, 230, 319
TspDTI	ATGAA	1 cut(s)	393
TspRI	CASTG	1 cut(s)	459
XceI	RCATGY	1 cut(s)	109

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.