Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr2

Orthogroup ID

OG0006771

Physical Location & Seq

Genomic Coordinates Forward (+)

41941643 .. 41945828

Gene Structure 4186 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000008890

Sequence Viewer

CDS Protein Promoter (2k)

Length: 522 bp

ATGTTTCTGGGCGTCCGAAAGAAAAGACCCATTAAACGTATTAAGAAGAAGCTGCTCAACAAATTGATAGACTATCTCACGTCTGATTCTTACATGTTTGCTCCCTTAATTTCTCGTCCACCTTCTGCATCTACCTCATCACGCAAGAAAAAGGCGTCTGTTAGAGGAGTGGAAGTAAAGAAACCCGTTAGAGAAAAGAAGAAGTTGCTTAAGAATGTTAGTGACTATCTGAAGTCAAACTCTTACATGTATGCGCCCTTGCTTGCTCCTCCTCAGTCACTTATTAGCTCTCCTAAAGGGTCTTCACTACACCTTGAGAGGGTCACCACCTTCGAAGTTTCGAAGAGGAAAGTAATTTTGAAAGGCTACAAACCAAATGAAAAGTTGGCAGATGGGATATTGAAGGATCAAGCTTGCGAAGGCTCTCTTCCTGAAGAAATCATCAAGCAGCAATCCTCGGTGCAGAAAGAAACATTGGAAGGGGAAAGAAATGCTTGGCTCCCAGATAACGAAGCTTATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

174

Amino Acids

19.61

Weight (kDa)

9.97

Isoelectric Point (pI)

55.71

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006771)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G57790 AT5G57790 AT5G57790 AT5G57790
fragaria_vesca	FvH4_2g31360
malus_domestica	MD16G1262100.v1.1
prunus_persica	Prupe.1G097900_v2.0.a1 Prupe.1G097900_v2.0.a1 Prupe.1G097900_v2.0.a1 Prupe.1G097900_v2.0.a1 Prupe.1G097900_v2.0.a1 Prupe.1G097900_v2.0.a1 Prupe.1G097900_v2.0.a1 Prupe.1G097900_v2.0.a1
pyrus_communis	pycom16g23030
rosa_chinensis	RchiOBHm_Chr4g0404981
rosa_laevigata	RLG00000008890
rosa_multiflora	Rmu_sc0000358.1_g000004
rosa_roxburghii	Rroxscaffold_5G00349130
rosa_rugosa	Rorug04G0050700 Rorug04G0050800
rosa_samantha	Rh4AG126500 Rh4BG120700 Rh4CG134800 Rh4DG120900
rosa_wichuraiana	Rw4G010260

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	414
AcuI	CTGAAG	2 cut(s)	251, 453
AcyI	GRCGYC	2 cut(s)	12, 155
AfiI	CCNNNNNNNGG	1 cut(s)	319
AflII	CTTAAG	1 cut(s)	209
AflIII	ACRYGT	2 cut(s)	93, 246
AgsI	TTSAA	2 cut(s)	361, 403
AjiI	CACGTC	1 cut(s)	81
AjuI	GAANNNNNNNTTGG	2 cut(s)	458, 490
AluBI	AGCT	4 cut(s)	52, 288, 413, 515
AluI	AGCT	4 cut(s)	52, 288, 413, 515
AlwI	GGATC	1 cut(s)	414
ApeKI	GCWGC	2 cut(s)	52, 448
AspLEI	GCGC	1 cut(s)	256
AsuHPI	GGTGA	1 cut(s)	316
AsuII	TTCGAA	2 cut(s)	333, 341
BbsI	GAAGAC	1 cut(s)	294
BbvI	GCAGC	2 cut(s)	39, 460
BccI	CCATC	1 cut(s)	386
BfrI	CTTAAG	1 cut(s)	209
BisI	GCNGC	2 cut(s)	53, 449
BlsI	GCNGC	2 cut(s)	54, 450
BmgBI	CACGTC	1 cut(s)	81
BmiI	GGNNCC	1 cut(s)	500
BmsI	GCATC	1 cut(s)	137
BpiI	GAAGAC	1 cut(s)	294
Bpu14I	TTCGAA	2 cut(s)	333, 341
BpuEI	CTTGAG	1 cut(s)	335
BsaHI	GRCGYC	2 cut(s)	12, 155
BsaJI	CCNNGG	1 cut(s)	456
BsaXI	ACNNNNNCTCC	2 cut(s)	159, 189
Bsc4I	CCNNNNNNNGG	1 cut(s)	319
BseDI	CCNNGG	1 cut(s)	456
BseLI	CCNNNNNNNGG	1 cut(s)	319
BseMII	CTCAG	1 cut(s)	287
BseRI	GAGGAG	3 cut(s)	180, 258, 261
BseXI	GCAGC	2 cut(s)	39, 460
BsgI	GTGCAG	1 cut(s)	482
BslI	CCNNNNNNNGG	1 cut(s)	319
Bsp119I	TTCGAA	2 cut(s)	333, 341
Bsp143I	GATC	1 cut(s)	406
BspCNI	CTCAG	1 cut(s)	286
BspLI	GGNNCC	1 cut(s)	500
BspPI	GGATC	1 cut(s)	414
BspT104I	TTCGAA	2 cut(s)	333, 341
BspTI	CTTAAG	1 cut(s)	209
BssECI	CCNNGG	1 cut(s)	456
BssMI	GATC	1 cut(s)	406
BssNI	GRCGYC	2 cut(s)	12, 155
Bst6I	CTCTTC	2 cut(s)	338, 432
BstACI	GRCGYC	2 cut(s)	12, 155
BstAFI	CTTAAG	1 cut(s)	209
BstBI	TTCGAA	2 cut(s)	333, 341
BstC8I	GCNNGC	2 cut(s)	264, 415
BstDEI	CTNAG	1 cut(s)	273
BstEII	GGTNACC	1 cut(s)	322
BstHHI	GCGC	1 cut(s)	256
BstKTI	GATC	1 cut(s)	409
BstMBI	GATC	1 cut(s)	406
BstNSI	RCATGY	2 cut(s)	97, 250
BstPI	GGTNACC	1 cut(s)	322
BstV1I	GCAGC	2 cut(s)	39, 460
BstV2I	GAAGAC	1 cut(s)	294
BtrI	CACGTC	1 cut(s)	81
Cac8I	GCNNGC	2 cut(s)	264, 415
CfoI	GCGC	1 cut(s)	256
CseI	GACGC	1 cut(s)	144
CviAII	CATG	2 cut(s)	94, 247
CviJI	RGCY	7 cut(s)	52, 288, 366, 413, 423, 499, 515
CviKI_1	RGCY	7 cut(s)	52, 288, 366, 413, 423, 499, 515
DdeI	CTNAG	1 cut(s)	273
DpnI	GATC	1 cut(s)	408
DpnII	GATC	1 cut(s)	406
Eam1104I	CTCTTC	2 cut(s)	338, 432
EarI	CTCTTC	2 cut(s)	338, 432
Eco57I	CTGAAG	2 cut(s)	251, 453
Eco91I	GGTNACC	1 cut(s)	322
EcoO65I	GGTNACC	1 cut(s)	322
FaeI	CATG	2 cut(s)	97, 250
FaiI	YATR	3 cut(s)	95, 248, 252
FalI	AAGNNNNNCTT	4 cut(s)	411, 443, 478, 510
FatI	CATG	2 cut(s)	93, 246
Fnu4HI	GCNGC	2 cut(s)	53, 449
Fsp4HI	GCNGC	2 cut(s)	53, 449
GlaI	GCGC	1 cut(s)	255
GluI	GCNGC	2 cut(s)	53, 449
HgaI	GACGC	1 cut(s)	144
HhaI	GCGC	1 cut(s)	256
Hin1I	GRCGYC	2 cut(s)	12, 155
Hin1II	CATG	2 cut(s)	97, 250
Hin6I	GCGC	1 cut(s)	254
HinP1I	GCGC	1 cut(s)	254
HindIII	AAGCTT	2 cut(s)	411, 513
HinfI	GANTC	1 cut(s)	86
HphI	GGTGA	1 cut(s)	316
Hpy166II	GTNNAC	1 cut(s)	119
Hpy188I	TCNGA	3 cut(s)	17, 85, 231
Hpy188III	TCNNGA	1 cut(s)	431
Hpy8I	GTNNAC	1 cut(s)	119
HpyAV	CCTTC	5 cut(s)	132, 340, 397, 413, 473
HpyCH4IV	ACGT	2 cut(s)	37, 80
HpyCH4V	TGCA	2 cut(s)	128, 463
HpyF3I	CTNAG	1 cut(s)	273
HpySE526I	ACGT	2 cut(s)	37, 80
Hsp92I	GRCGYC	2 cut(s)	12, 155
Hsp92II	CATG	2 cut(s)	97, 250
HspAI	GCGC	1 cut(s)	254
Kzo9I	GATC	1 cut(s)	406
LmnI	GCTCC	3 cut(s)	106, 271, 504
LpnPI	CCDG	2 cut(s)	444, 516
Lsp1109I	GCAGC	2 cut(s)	39, 460
LweI	GCATC	1 cut(s)	137
MaeII	ACGT	2 cut(s)	37, 80
MaeIII	GTNAC	3 cut(s)	221, 276, 322
MalI	GATC	1 cut(s)	408
MboI	GATC	1 cut(s)	406
MboII	GAAGA	6 cut(s)	58, 211, 294, 355, 419, 446
MluCI	AATT	3 cut(s)	62, 108, 354
MnlI	CCTC	7 cut(s)	145, 158, 279, 282, 312, 339, 466
MseI	TTAA	4 cut(s)	33, 42, 107, 210
MspCI	CTTAAG	1 cut(s)	209
NdeII	GATC	1 cut(s)	406
NlaIII	CATG	2 cut(s)	97, 250
NlaIV	GGNNCC	1 cut(s)	500
NmuCI	GTSAC	3 cut(s)	221, 276, 322
NspI	RCATGY	2 cut(s)	97, 250
NspV	TTCGAA	2 cut(s)	333, 341
PciI	ACATGT	2 cut(s)	93, 246
PfeI	GAWTC	1 cut(s)	86
PkrI	GCNGC	2 cut(s)	54, 450
PscI	ACATGT	2 cut(s)	93, 246
PspEI	GGTNACC	1 cut(s)	322
PspN4I	GGNNCC	1 cut(s)	500
SaqAI	TTAA	4 cut(s)	33, 42, 107, 210
SatI	GCNGC	2 cut(s)	53, 449
Sau3AI	GATC	1 cut(s)	406
SfaNI	GCATC	1 cut(s)	137
SfuI	TTCGAA	2 cut(s)	333, 341
SmlI	CTYRAG	2 cut(s)	209, 314
SmoI	CTYRAG	2 cut(s)	209, 314
Sse9I	AATT	3 cut(s)	62, 108, 354
TaiI	ACGT	2 cut(s)	40, 83
TaqI	TCGA	2 cut(s)	333, 341
TasI	AATT	3 cut(s)	62, 108, 354
TfiI	GAWTC	1 cut(s)	86
Tru1I	TTAA	4 cut(s)	33, 42, 107, 210
Tru9I	TTAA	4 cut(s)	33, 42, 107, 210
TseFI	GTSAC	3 cut(s)	221, 276, 322
TseI	GCWGC	2 cut(s)	52, 448
Tsp45I	GTSAC	3 cut(s)	221, 276, 322
TspDTI	ATGAA	1 cut(s)	393
Vha464I	CTTAAG	1 cut(s)	209
XceI	RCATGY	2 cut(s)	97, 250

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.