Prupe.1G097900_v2.0.a1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
OG0006771
Physical Location & Seq
Reverse (-)
7813684 .. 7820097
6414 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G097900.7

Sequence Viewer

Length: 585 bp
ATGGTGAAGAAAATGTTGCTAGAAGTTCAAAAGAAAAGACCCATTAAGCGTAATAAGAAGAAACTGCTAAAGAAAGTCATAGACTTTCTCATTTCTAACTCTTACATGTTTGCTCCTCTAATTTCTCATCCACCTCACGGCTTTAGCTCACCCATGAAGACAAGGGCTTCTATTACAGGAGTGGAAGGAAGGAAACCCATTAAAGGAAACAACAAGAGGTTGCTGAAGAAGGTTGGGGACTATCTGAAGTCTGACTCTTACATGTATGCTCCCCTGCTTGCTTCACCTCCATCAGCCAGTACTAGTAGCCCTCCTAAAGGGTCTTCAAAGTACCTTAAGAAGGTCGTCACCATGGCCAATTCAGAGAGGAAATTATTTTTAAAATACAACAAATCAAATGAACGGTTTACAAATGTGATAGCAGAGGATCAAGCCTCCAAGGGCTGTCTTCCTGAAAAAGTCCTTTCAGAGCAGCAATCTGTAGTGCACAAGGAAACAGTGAAGCATGTGGTTCACCATAGCTGTCGCTCATCGATGTCAGGGAAAGGACTGCTCAGATCGCACCTAAGGAAGCTTGTTGACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

195

Amino Acids

21.83

Weight (kDa)

10.3

Isoelectric Point (pI)

55.31

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 435
AcoI YGGCCR 1 cut(s) 354
AcuI CTGAAG 2 cut(s) 245, 266
AfaI GTAC 2 cut(s) 301, 332
AfiI CCNNNNNNNGG 4 cut(s) 137, 203, 317, 340
AflII CTTAAG 1 cut(s) 335
AflIII ACRYGT 2 cut(s) 105, 261
AgsI TTSAA 2 cut(s) 29, 327
AhlI ACTAGT 1 cut(s) 302
AluBI AGCT 3 cut(s) 147, 522, 574
AluI AGCT 3 cut(s) 147, 522, 574
Alw21I GWGCWC 1 cut(s) 489
Alw44I GTGCAC 1 cut(s) 485
AlwI GGATC 1 cut(s) 435
AoxI GGCC 1 cut(s) 354
ApaLI GTGCAC 1 cut(s) 485
ApeKI GCWGC 1 cut(s) 472
AsuHPI GGTGA 5 cut(s) 16, 141, 276, 340, 506
AxyI CCTNAGG 1 cut(s) 566
BaeGI GKGCMC 1 cut(s) 489
BalI TGGCCA 1 cut(s) 356
BbsI GAAGAC 3 cut(s) 164, 315, 440
Bbv12I GWGCWC 1 cut(s) 489
BbvI GCAGC 1 cut(s) 484
BccI CCATC 1 cut(s) 298
BceAI ACGGC 1 cut(s) 154
BcuI ACTAGT 1 cut(s) 302
BfaI CTAG 2 cut(s) 20, 303
BfmI CTRYAG 1 cut(s) 480
BfrI CTTAAG 1 cut(s) 335
BisI GCNGC 1 cut(s) 473
BlsI GCNGC 1 cut(s) 474
BmcAI AGTACT 1 cut(s) 301
BpiI GAAGAC 3 cut(s) 164, 315, 440
Bsa29I ATCGAT 1 cut(s) 533
BsaJI CCNNGG 2 cut(s) 351, 438
Bsc4I CCNNNNNNNGG 4 cut(s) 137, 203, 317, 340
Bse1I ACTGG 1 cut(s) 297
Bse21I CCTNAGG 1 cut(s) 566
BseCI ATCGAT 1 cut(s) 533
BseDI CCNNGG 2 cut(s) 351, 438
BseGI GGATG 1 cut(s) 127
BseLI CCNNNNNNNGG 4 cut(s) 137, 203, 317, 340
BseMII CTCAG 1 cut(s) 568
BseNI ACTGG 1 cut(s) 297
BseRI GAGGAG 1 cut(s) 105
BseSI GKGCMC 1 cut(s) 489
BseXI GCAGC 1 cut(s) 484
BshFI GGCC 1 cut(s) 356
BshVI ATCGAT 1 cut(s) 533
BsiHKAI GWGCWC 1 cut(s) 489
BslFI GGGAC 1 cut(s) 251
BslI CCNNNNNNNGG 4 cut(s) 137, 203, 317, 340
BsmFI GGGAC 1 cut(s) 251
BsnI GGCC 1 cut(s) 356
Bsp1286I GDGCHC 1 cut(s) 489
Bsp143I GATC 2 cut(s) 427, 557
Bsp19I CCATGG 1 cut(s) 351
BspANI GGCC 1 cut(s) 356
BspCNI CTCAG 1 cut(s) 567
BspDI ATCGAT 1 cut(s) 533
BspPI GGATC 1 cut(s) 435
BspTI CTTAAG 1 cut(s) 335
BsrI ACTGG 1 cut(s) 297
BssECI CCNNGG 2 cut(s) 351, 438
BssMI GATC 2 cut(s) 427, 557
BssT1I CCWWGG 2 cut(s) 351, 438
Bst4CI ACNGT 2 cut(s) 405, 499
BstAFI CTTAAG 1 cut(s) 335
BstC8I GCNNGC 1 cut(s) 279
BstDEI CTNAG 2 cut(s) 554, 566
BstDSI CCRYGG 1 cut(s) 351
BstENI CCTNNNNNAGG 2 cut(s) 315, 338
BstF5I GGATG 1 cut(s) 127
BstKTI GATC 2 cut(s) 430, 560
BstMBI GATC 2 cut(s) 427, 557
BstMWI GCNNNNNNNGC 1 cut(s) 559
BstNSI RCATGY 3 cut(s) 109, 265, 509
BstSFI CTRYAG 1 cut(s) 480
BstSLI GKGCMC 1 cut(s) 489
BstV1I GCAGC 1 cut(s) 484
BstV2I GAAGAC 3 cut(s) 164, 315, 440
Bsu15I ATCGAT 1 cut(s) 533
Bsu36I CCTNAGG 1 cut(s) 566
BsuRI GGCC 1 cut(s) 356
BsuTUI ATCGAT 1 cut(s) 533
BtgI CCRYGG 1 cut(s) 351
BtsCI GGATG 1 cut(s) 127
BtsIMutI CAGTG 1 cut(s) 504
Cac8I GCNNGC 1 cut(s) 279
ClaI ATCGAT 1 cut(s) 533
Csp6I GTAC 2 cut(s) 300, 331
CviAII CATG 5 cut(s) 106, 154, 262, 352, 506
CviQI GTAC 2 cut(s) 300, 331
DdeI CTNAG 2 cut(s) 554, 566
DpnI GATC 2 cut(s) 429, 559
DpnII GATC 2 cut(s) 427, 557
DraI TTTAAA 1 cut(s) 381
EaeI YGGCCR 1 cut(s) 354
Eco130I CCWWGG 2 cut(s) 351, 438
Eco57I CTGAAG 2 cut(s) 245, 266
Eco81I CCTNAGG 1 cut(s) 566
EcoNI CCTNNNNNAGG 2 cut(s) 315, 338
EcoT14I CCWWGG 2 cut(s) 351, 438
ErhI CCWWGG 2 cut(s) 351, 438
FaeI CATG 5 cut(s) 109, 157, 265, 355, 509
FaiI YATR 8 cut(s) 80, 107, 155, 263, 267, 353, 507, 519
FaqI GGGAC 1 cut(s) 251
FatI CATG 5 cut(s) 105, 153, 261, 351, 505
Fnu4HI GCNGC 1 cut(s) 473
FokI GGATG 1 cut(s) 114
Fsp4HI GCNGC 1 cut(s) 473
FspBI CTAG 2 cut(s) 20, 303
GluI GCNGC 1 cut(s) 473
HaeIII GGCC 1 cut(s) 356
Hin1II CATG 5 cut(s) 109, 157, 265, 355, 509
HincII GTYRAC 1 cut(s) 580
HindII GTYRAC 1 cut(s) 580
HindIII AAGCTT 1 cut(s) 572
HinfI GANTC 1 cut(s) 254
HphI GGTGA 5 cut(s) 16, 141, 276, 340, 506
Hpy166II GTNNAC 4 cut(s) 408, 487, 514, 580
Hpy188I TCNGA 5 cut(s) 246, 253, 364, 469, 557
Hpy188III TCNNGA 1 cut(s) 452
Hpy8I GTNNAC 4 cut(s) 408, 487, 514, 580
HpyAV CCTTC 4 cut(s) 179, 183, 223, 334
HpyCH4III ACNGT 2 cut(s) 405, 499
HpyCH4V TGCA 1 cut(s) 487
HpyF10VI GCNNNNNNNGC 1 cut(s) 559
HpyF3I CTNAG 2 cut(s) 554, 566
Hsp92II CATG 5 cut(s) 109, 157, 265, 355, 509
Kzo9I GATC 2 cut(s) 427, 557
LmnI GCTCC 2 cut(s) 118, 274
LpnPI CCDG 5 cut(s) 162, 287, 310, 465, 525
Lsp1109I GCAGC 1 cut(s) 484
MaeI CTAG 2 cut(s) 20, 303
MaeIII GTNAC 1 cut(s) 346
MalI GATC 2 cut(s) 429, 559
MboI GATC 2 cut(s) 427, 557
MboII GAAGA 6 cut(s) 19, 70, 169, 238, 315, 440
MhlI GDGCHC 1 cut(s) 489
MlsI TGGCCA 1 cut(s) 356
MluCI AATT 3 cut(s) 120, 358, 371
MluNI TGGCCA 1 cut(s) 356
MlyI GAGTC 1 cut(s) 248
MnlI CCTC 8 cut(s) 126, 144, 210, 297, 321, 360, 418, 445
Mox20I TGGCCA 1 cut(s) 356
MscI TGGCCA 1 cut(s) 356
MseI TTAA 4 cut(s) 45, 201, 336, 380
Msp20I TGGCCA 1 cut(s) 356
MspCI CTTAAG 1 cut(s) 335
MwoI GCNNNNNNNGC 1 cut(s) 559
NcoI CCATGG 1 cut(s) 351
NdeII GATC 2 cut(s) 427, 557
NlaIII CATG 5 cut(s) 109, 157, 265, 355, 509
NmuCI GTSAC 1 cut(s) 346
NspI RCATGY 3 cut(s) 109, 265, 509
PciI ACATGT 2 cut(s) 105, 261
PkrI GCNGC 1 cut(s) 474
PleI GAGTC 1 cut(s) 248
PpsI GAGTC 1 cut(s) 248
PscI ACATGT 2 cut(s) 105, 261
RsaI GTAC 2 cut(s) 301, 332
RsaNI GTAC 2 cut(s) 300, 331
SaqAI TTAA 4 cut(s) 45, 201, 336, 380
SatI GCNGC 1 cut(s) 473
Sau3AI GATC 2 cut(s) 427, 557
ScaI AGTACT 1 cut(s) 301
SchI GAGTC 1 cut(s) 248
SduI GDGCHC 1 cut(s) 489
SfcI CTRYAG 1 cut(s) 480
SmlI CTYRAG 1 cut(s) 335
SmoI CTYRAG 1 cut(s) 335
SpeI ACTAGT 1 cut(s) 302
Sse9I AATT 3 cut(s) 120, 358, 371
SspMI CTAG 2 cut(s) 20, 303
StyI CCWWGG 2 cut(s) 351, 438
TaaI ACNGT 2 cut(s) 405, 499
TaqI TCGA 1 cut(s) 533
TasI AATT 3 cut(s) 120, 358, 371
TatI WGTACW 1 cut(s) 299
Tru1I TTAA 4 cut(s) 45, 201, 336, 380
Tru9I TTAA 4 cut(s) 45, 201, 336, 380
TscAI CASTG 1 cut(s) 504
TseFI GTSAC 1 cut(s) 346
TseI GCWGC 1 cut(s) 472
Tsp45I GTSAC 1 cut(s) 346
TspDTI ATGAA 2 cut(s) 170, 414
TspRI CASTG 1 cut(s) 504
Vha464I CTTAAG 1 cut(s) 335
VneI GTGCAC 1 cut(s) 485
XagI CCTNNNNNAGG 2 cut(s) 315, 338
XceI RCATGY 3 cut(s) 109, 265, 509
XspI CTAG 2 cut(s) 20, 303
ZrmI AGTACT 1 cut(s) 301
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.