Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4B

Orthogroup ID

OG0006771

Physical Location & Seq

Genomic Coordinates Reverse (-)

20149388 .. 20151994

Gene Structure 2607 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4BG120700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 582 bp

ATGGACGGGAGAATGTTTCTGGGCGTCCGAAAGAAAAGACCCATTAAGCGTATTAAGAAGAAGCTGCTCAACAAATTGTTAGACTATCTCACATCTGATTCCTACATGTTTGCTCCTTTAATTTCTCGTCCACCTTCTGCATCTACCTCATCAAGCAAGAAAAAGGCGTCTGTTAGAGGAGTGGAAGTAAAGAAATCCGTTAGAGAAAAGAAGAAGTTGCTTAAGAATGTTAGTGACTATCTGAAGTCAAACTCTTACATGTATGCGCCCTTGCTTGCTCCTCCTCAGTCACTTATTAGCTTTCCTAAAGGGTCTTCACTACACCCTGAGAGGGTCACCACCTTCGAAGTTTCAAAGAGGAAAGTAATTTTGAAAGGCTACAGACCAAATGAAAAGTTGGCAGATGGGATATTAAAGGATCAAGCTTGCGAGGGCTCTCTTCCTGAAGAAATCATCAAGCAGCAATCCTCGGTGCAGAAAGAAACAGTGAAGCAAAAGGAAACCTTCATAGTTCACAATAGCTGTCGCTCATCATCTATGCCAGGGAAAGAAATGCTTGGCTCCCAGATAGACATTACCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

193

Amino Acids

21.73

Weight (kDa)

10.05

Isoelectric Point (pI)

59.15

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006771)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G57790 AT5G57790 AT5G57790 AT5G57790
fragaria_vesca	FvH4_2g31360
malus_domestica	MD16G1262100.v1.1
prunus_persica	Prupe.1G097900_v2.0.a1 Prupe.1G097900_v2.0.a1 Prupe.1G097900_v2.0.a1 Prupe.1G097900_v2.0.a1 Prupe.1G097900_v2.0.a1 Prupe.1G097900_v2.0.a1 Prupe.1G097900_v2.0.a1 Prupe.1G097900_v2.0.a1
pyrus_communis	pycom16g23030
rosa_chinensis	RchiOBHm_Chr4g0404981
rosa_laevigata	RLG00000008890
rosa_multiflora	Rmu_sc0000358.1_g000004
rosa_roxburghii	Rroxscaffold_5G00349130
rosa_rugosa	Rorug04G0050700 Rorug04G0050800
rosa_samantha	Rh4AG126500 Rh4BG120700 Rh4CG134800 Rh4DG120900
rosa_wichuraiana	Rw4G010260

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	426
AcuI	CTGAAG	2 cut(s)	263, 465
AcyI	GRCGYC	2 cut(s)	24, 167
AfiI	CCNNNNNNNGG	1 cut(s)	331
AflII	CTTAAG	1 cut(s)	221
AflIII	ACRYGT	2 cut(s)	105, 258
AgsI	TTSAA	2 cut(s)	354, 373
AjnI	CCWGG	1 cut(s)	541
AluBI	AGCT	4 cut(s)	64, 300, 425, 522
AluI	AGCT	4 cut(s)	64, 300, 425, 522
AlwI	GGATC	1 cut(s)	426
ApeKI	GCWGC	2 cut(s)	64, 460
AspLEI	GCGC	1 cut(s)	268
AsuHPI	GGTGA	1 cut(s)	328
AsuII	TTCGAA	1 cut(s)	345
BanII	GRGCYC	1 cut(s)	437
BbsI	GAAGAC	1 cut(s)	306
BbvI	GCAGC	2 cut(s)	51, 472
BccI	CCATC	1 cut(s)	398
BciT130I	CCWGG	1 cut(s)	543
BfaI	CTAG	1 cut(s)	580
BfmI	CTRYAG	1 cut(s)	379
BfrI	CTTAAG	1 cut(s)	221
BisI	GCNGC	2 cut(s)	65, 461
BlsI	GCNGC	2 cut(s)	66, 462
Bme1390I	CCNGG	1 cut(s)	543
BmiI	GGNNCC	1 cut(s)	562
BmrFI	CCNGG	1 cut(s)	543
BmsI	GCATC	1 cut(s)	149
BpiI	GAAGAC	1 cut(s)	306
Bpu14I	TTCGAA	1 cut(s)	345
BsaHI	GRCGYC	2 cut(s)	24, 167
BsaJI	CCNNGG	2 cut(s)	468, 542
BsaXI	ACNNNNNCTCC	2 cut(s)	171, 201
Bsc4I	CCNNNNNNNGG	1 cut(s)	331
BseBI	CCWGG	1 cut(s)	543
BseDI	CCNNGG	2 cut(s)	468, 542
BseLI	CCNNNNNNNGG	1 cut(s)	331
BseMII	CTCAG	2 cut(s)	299, 318
BseRI	GAGGAG	3 cut(s)	192, 270, 273
BseXI	GCAGC	2 cut(s)	51, 472
BsgI	GTGCAG	1 cut(s)	494
BslI	CCNNNNNNNGG	1 cut(s)	331
Bsp119I	TTCGAA	1 cut(s)	345
Bsp1286I	GDGCHC	1 cut(s)	437
Bsp143I	GATC	1 cut(s)	418
BspCNI	CTCAG	2 cut(s)	298, 319
BspLI	GGNNCC	1 cut(s)	562
BspPI	GGATC	1 cut(s)	426
BspT104I	TTCGAA	1 cut(s)	345
BspTI	CTTAAG	1 cut(s)	221
BssECI	CCNNGG	2 cut(s)	468, 542
BssMI	GATC	1 cut(s)	418
BssNI	GRCGYC	2 cut(s)	24, 167
Bst2UI	CCWGG	1 cut(s)	543
Bst4CI	ACNGT	1 cut(s)	487
Bst6I	CTCTTC	1 cut(s)	444
BstACI	GRCGYC	2 cut(s)	24, 167
BstAFI	CTTAAG	1 cut(s)	221
BstBI	TTCGAA	1 cut(s)	345
BstC8I	GCNNGC	2 cut(s)	276, 427
BstDEI	CTNAG	2 cut(s)	285, 327
BstEII	GGTNACC	1 cut(s)	334
BstHHI	GCGC	1 cut(s)	268
BstKTI	GATC	1 cut(s)	421
BstMBI	GATC	1 cut(s)	418
BstNI	CCWGG	1 cut(s)	543
BstNSI	RCATGY	2 cut(s)	109, 262
BstPI	GGTNACC	1 cut(s)	334
BstSCI	CCNGG	1 cut(s)	541
BstSFI	CTRYAG	1 cut(s)	379
BstV1I	GCAGC	2 cut(s)	51, 472
BstV2I	GAAGAC	1 cut(s)	306
BtsIMutI	CAGTG	1 cut(s)	492
Cac8I	GCNNGC	2 cut(s)	276, 427
CfoI	GCGC	1 cut(s)	268
CseI	GACGC	2 cut(s)	13, 156
CviAII	CATG	2 cut(s)	106, 259
CviJI	RGCY	7 cut(s)	64, 300, 378, 425, 435, 522, 561
CviKI_1	RGCY	7 cut(s)	64, 300, 378, 425, 435, 522, 561
DdeI	CTNAG	2 cut(s)	285, 327
DpnI	GATC	1 cut(s)	420
DpnII	GATC	1 cut(s)	418
Eam1104I	CTCTTC	1 cut(s)	444
EarI	CTCTTC	1 cut(s)	444
Eco24I	GRGCYC	1 cut(s)	437
Eco57I	CTGAAG	2 cut(s)	263, 465
Eco91I	GGTNACC	1 cut(s)	334
EcoO65I	GGTNACC	1 cut(s)	334
EcoRII	CCWGG	1 cut(s)	541
EcoT38I	GRGCYC	1 cut(s)	437
FaeI	CATG	2 cut(s)	109, 262
FaiI	YATR	5 cut(s)	107, 260, 264, 509, 539
FalI	AAGNNNNNCTT	4 cut(s)	488, 520, 540, 572
FatI	CATG	2 cut(s)	105, 258
Fnu4HI	GCNGC	2 cut(s)	65, 461
FriOI	GRGCYC	1 cut(s)	437
Fsp4HI	GCNGC	2 cut(s)	65, 461
FspBI	CTAG	1 cut(s)	580
GlaI	GCGC	1 cut(s)	267
GluI	GCNGC	2 cut(s)	65, 461
HgaI	GACGC	2 cut(s)	13, 156
HhaI	GCGC	1 cut(s)	268
Hin1I	GRCGYC	2 cut(s)	24, 167
Hin1II	CATG	2 cut(s)	109, 262
Hin6I	GCGC	1 cut(s)	266
HinP1I	GCGC	1 cut(s)	266
HindIII	AAGCTT	1 cut(s)	423
HinfI	GANTC	1 cut(s)	98
HphI	GGTGA	1 cut(s)	328
Hpy166II	GTNNAC	2 cut(s)	131, 514
Hpy188I	TCNGA	3 cut(s)	29, 97, 243
Hpy188III	TCNNGA	1 cut(s)	443
Hpy8I	GTNNAC	2 cut(s)	131, 514
HpyAV	CCTTC	3 cut(s)	144, 352, 514
HpyCH4III	ACNGT	1 cut(s)	487
HpyCH4V	TGCA	2 cut(s)	140, 475
HpyF3I	CTNAG	2 cut(s)	285, 327
Hsp92I	GRCGYC	2 cut(s)	24, 167
Hsp92II	CATG	2 cut(s)	109, 262
HspAI	GCGC	1 cut(s)	266
Kzo9I	GATC	1 cut(s)	418
LmnI	GCTCC	3 cut(s)	118, 283, 566
LpnPI	CCDG	6 cut(s)	5, 339, 456, 528, 555, 578
Lsp1109I	GCAGC	2 cut(s)	51, 472
LweI	GCATC	1 cut(s)	149
MaeI	CTAG	1 cut(s)	580
MaeIII	GTNAC	3 cut(s)	233, 288, 334
MalI	GATC	1 cut(s)	420
MboI	GATC	1 cut(s)	418
MboII	GAAGA	5 cut(s)	70, 223, 306, 431, 458
MhlI	GDGCHC	1 cut(s)	437
MluCI	AATT	3 cut(s)	74, 120, 366
MnlI	CCTC	8 cut(s)	157, 170, 291, 294, 324, 351, 424, 478
MseI	TTAA	5 cut(s)	45, 54, 119, 222, 413
MspCI	CTTAAG	1 cut(s)	221
MspR9I	CCNGG	1 cut(s)	543
MvaI	CCWGG	1 cut(s)	543
NdeII	GATC	1 cut(s)	418
NlaIII	CATG	2 cut(s)	109, 262
NlaIV	GGNNCC	1 cut(s)	562
NmuCI	GTSAC	3 cut(s)	233, 288, 334
NspI	RCATGY	2 cut(s)	109, 262
NspV	TTCGAA	1 cut(s)	345
PciI	ACATGT	2 cut(s)	105, 258
PfeI	GAWTC	1 cut(s)	98
PkrI	GCNGC	2 cut(s)	66, 462
PscI	ACATGT	2 cut(s)	105, 258
Psp6I	CCWGG	1 cut(s)	541
PspEI	GGTNACC	1 cut(s)	334
PspGI	CCWGG	1 cut(s)	541
PspN4I	GGNNCC	1 cut(s)	562
SaqAI	TTAA	5 cut(s)	45, 54, 119, 222, 413
SatI	GCNGC	2 cut(s)	65, 461
Sau3AI	GATC	1 cut(s)	418
ScrFI	CCNGG	1 cut(s)	543
SduI	GDGCHC	1 cut(s)	437
SetI	ASST	9 cut(s)	66, 136, 149, 302, 344, 427, 506, 524, 581
SfaNI	GCATC	1 cut(s)	149
SfcI	CTRYAG	1 cut(s)	379
SfuI	TTCGAA	1 cut(s)	345
SmlI	CTYRAG	1 cut(s)	221
SmoI	CTYRAG	1 cut(s)	221
Sse9I	AATT	3 cut(s)	74, 120, 366
SspMI	CTAG	1 cut(s)	580
StyD4I	CCNGG	1 cut(s)	541
TaaI	ACNGT	1 cut(s)	487
TaqI	TCGA	1 cut(s)	345
TasI	AATT	3 cut(s)	74, 120, 366
TfiI	GAWTC	1 cut(s)	98
Tru1I	TTAA	5 cut(s)	45, 54, 119, 222, 413
Tru9I	TTAA	5 cut(s)	45, 54, 119, 222, 413
TscAI	CASTG	1 cut(s)	492
TseFI	GTSAC	3 cut(s)	233, 288, 334
TseI	GCWGC	2 cut(s)	64, 460
Tsp45I	GTSAC	3 cut(s)	233, 288, 334
TspDTI	ATGAA	2 cut(s)	405, 496
TspGWI	ACGGA	1 cut(s)	187
TspRI	CASTG	1 cut(s)	492
Vha464I	CTTAAG	1 cut(s)	221
XceI	RCATGY	2 cut(s)	109, 262
XspI	CTAG	1 cut(s)	580

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.