FvH4_2g31510

Conserved oligomeric Golgi complex subunit

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
OG0007656
Physical Location & Seq
Forward (+)
24125615 .. 24129617
4003 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g31510.t3

Sequence Viewer

Length: 1434 bp
ATGAACCAGACATTGTTAGCCAATCACAGTACATTGCTCGACTTACTTGAAATTCCTCAGCTTATGGACACATGTGTGAGGAATGGAAATTATGATGAAGCTCTGGACTTGGAAACGTTTGTTTGCAAGCTTTCAACCATGCACCCCAAGTTGCCCGTTATACAAGCTCTGGCTGCAGAAGTCAGGCAGACCACTCAGTCTCTTCTTTCGCAGCTTCTTCAAAAACTACGCTCAAATATTCAGTTACCTGAGTGTCTCCGCATTATTGGATATCTACGAAGGATAGGGGTATTTAGCGAGTATGAAATGCGTTTGCAGTTCTTGAGATGTCGGCTGGCATGGCTTACTGGACTTCTTGAGGATTTGGACCAGAGGAACGCTTATGACTACCTGAAGGGTATGATTAACTACCAGAGACAGCATCTATTTGATGTTGTCAATCAATACAGAGCGATATTTTCAGATGATACATCAGGCAATGAAGAAAATCATGATGGCGGTCTTCTGTTCAGTTGGTCTATGCATCAAATTACCTCACTCCTTAAGACTCTAAAAATTATGCTTCCAAAAATAACTGAAGGTGTATCACTATCGAATATTTTGGAGCAATCCATGTATTGTGCTATGGGGCTTGGTTGGGTTGGGCTAGATTTTCGGGGGCTGCTACCATCACTTTTTGAAGAGGCAGTTCTCAACTTGTTCGCAAAAAATATGGGTACAGCAGTTGAAAATTTTCAGTTGGTCTTGGATTCACATCGTTGGGTCCCACTACCAGCAGTTGGTTTTCCATCAAACCGTGTTAATGATGAAAGCCTGGATGATGTAACTCCGCCATCTTCTCTTATGGAGCATCCACCTCTTGCTGTTTTTGTTAATGGTGTCTCTGCAGCGATGAATGACCTCCGCCCCTGTGCCCCAATAAGTTTGAAGCACGTGCTTGCTCAAGAGTTAATCAAGGGATTACAGACTGTTGCTGACTCTTTACTGAGGTACAATACAACTAGAATACTGAGAGATAACGAGTCTGGACTTTTCCTCTCTCTTTGCCGGGCATTCATTGAGATTACTTATCCTCATTGTGCAAATTGCTTTGGGCGCTGCTACCCCGGCGGAGCTGCTTTAGTAATGGATGCAAAGGGTTTATATGATGGGATTGGTCGCCTGTTGACAAACTCTACATCCAGAGGGCTTCCCAAACCTGTTGGTGATGAAAACAAAGATAAAAGCGAAAATAGCATAACTGAGAACGGCGACATGCCCGTGGTTGAAAATGGTGTCGCACCAGTTGTTGAACATACTAATGAGACCAATGCAGACGAAAAGGAACAGAAGGTCGAGAAAATAGATGAAAGGGAACAGAACGTCGATAAAATAGATGAAAGGGAATCGAAAAGCCCAATTTTTCAAATAGAGGAAAGAAGAAGCGATGTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Dor1

Protein Analysis

478

Amino Acids

53.66

Weight (kDa)

5.08

Isoelectric Point (pI)

44.21

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Dor1 PF04124 1 - 305 1.5e-118 Dor1-like family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 196
AccB7I CCANNNNNTGG 1 cut(s) 779
AciI CCGC 5 cut(s) 259, 498, 830, 904, 1110
AclI AACGTT 1 cut(s) 116
AcsI RAATTY 2 cut(s) 51, 730
AcuI CTGAAG 2 cut(s) 413, 597
AcvI CACGTG 1 cut(s) 934
AfaI GTAC 3 cut(s) 31, 718, 992
AfiI CCNNNNNNNGG 1 cut(s) 779
AflII CTTAAG 1 cut(s) 542
AflIII ACRYGT 1 cut(s) 71
AgsI TTSAA 9 cut(s) 50, 135, 221, 680, 728, 928, 1268, 1292, 1406
AjnI CCWGG 1 cut(s) 813
AleI CACNNNNGTG 1 cut(s) 74
AluBI AGCT 6 cut(s) 61, 101, 130, 167, 214, 1115
AluI AGCT 6 cut(s) 61, 101, 130, 167, 214, 1115
Alw26I GTCTC 5 cut(s) 204, 260, 409, 886, 1298
ApeKI GCWGC 6 cut(s) 173, 211, 661, 887, 1098, 1115
ApoI RAATTY 2 cut(s) 51, 730
Asp700I GAANNNNTTC 1 cut(s) 732
AspLEI GCGC 1 cut(s) 1098
AspS9I GGNCC 2 cut(s) 367, 763
AsuC2I CCSGG 2 cut(s) 1049, 1107
AsuHPI GGTGA 1 cut(s) 1217
AvaII GGWCC 2 cut(s) 367, 763
BaeGI GKGCMC 1 cut(s) 916
BaeI ACNNNNGTAYC 2 cut(s) 708, 741
BbrPI CACGTG 1 cut(s) 934
BbsI GAAGAC 1 cut(s) 494
BbvCI CCTCAGC 1 cut(s) 57
BbvI GCAGC 6 cut(s) 160, 223, 648, 899, 1085, 1102
BccI CCATC 5 cut(s) 488, 676, 796, 841, 1142
BceAI ACGGC 1 cut(s) 1264
BciT130I CCWGG 1 cut(s) 815
BcnI CCSGG 2 cut(s) 1049, 1107
BcoDI GTCTC 5 cut(s) 204, 260, 409, 886, 1298
BfaI CTAG 2 cut(s) 647, 1002
BfmI CTRYAG 2 cut(s) 174, 885
BfoI RGCGCY 1 cut(s) 1099
BfrI CTTAAG 1 cut(s) 542
BisI GCNGC 6 cut(s) 174, 212, 662, 888, 1099, 1116
BlsI GCNGC 6 cut(s) 175, 213, 663, 889, 1100, 1117
Bme1390I CCNGG 3 cut(s) 815, 1049, 1107
Bme18I GGWCC 2 cut(s) 367, 763
BmgT120I GGNCC 2 cut(s) 367, 763
BmiI GGNNCC 2 cut(s) 764, 765
BmrFI CCNGG 3 cut(s) 815, 1049, 1107
BmsI GCATC 4 cut(s) 430, 532, 859, 1120
BpiI GAAGAC 1 cut(s) 494
Bpu10I CCTNAGC 1 cut(s) 57
BpuEI CTTGAG 3 cut(s) 343, 377, 927
BpuMI CCSGG 2 cut(s) 1049, 1107
BsaAI YACGTR 1 cut(s) 934
BsaBI GATNNNNATC 1 cut(s) 753
BsaI GGTCTC 1 cut(s) 1298
BsaJI CCNNGG 2 cut(s) 1105, 1260
Bsc4I CCNNNNNNNGG 1 cut(s) 779
Bse1I ACTGG 2 cut(s) 352, 1283
Bse3DI GCAATG 2 cut(s) 32, 484
Bse8I GATNNNNATC 1 cut(s) 753
BseBI CCWGG 1 cut(s) 815
BseDI CCNNGG 2 cut(s) 1105, 1260
BseGI GGATG 4 cut(s) 823, 850, 1135, 1178
BseJI GATNNNNATC 1 cut(s) 753
BseLI CCNNNNNNNGG 1 cut(s) 779
BseMI GCAATG 2 cut(s) 32, 484
BseMII CTCAG 6 cut(s) 71, 209, 240, 977, 1001, 1233
BseNI ACTGG 2 cut(s) 352, 1283
BseSI GKGCMC 1 cut(s) 916
BseXI GCAGC 6 cut(s) 160, 223, 648, 899, 1085, 1102
BsiSI CCGG 2 cut(s) 1048, 1107
BslFI GGGAC 1 cut(s) 749
BslI CCNNNNNNNGG 1 cut(s) 779
BsmAI GTCTC 5 cut(s) 204, 260, 409, 886, 1298
BsmFI GGGAC 1 cut(s) 749
BsmI GAATGC 1 cut(s) 1052
Bso31I GGTCTC 1 cut(s) 1298
Bsp1286I GDGCHC 1 cut(s) 916
BspACI CCGC 5 cut(s) 259, 498, 830, 904, 1110
BspCNI CTCAG 6 cut(s) 70, 208, 241, 978, 1002, 1234
BspHI TCATGA 1 cut(s) 490
BspLI GGNNCC 2 cut(s) 764, 765
BspMAI CTGCAG 2 cut(s) 178, 889
BspTI CTTAAG 1 cut(s) 542
BspTNI GGTCTC 1 cut(s) 1298
BsrDI GCAATG 2 cut(s) 32, 484
BsrI ACTGG 2 cut(s) 352, 1283
BssECI CCNNGG 2 cut(s) 1105, 1260
Bst2UI CCWGG 1 cut(s) 815
Bst4CI ACNGT 3 cut(s) 29, 797, 970
Bst6I CTCTTC 2 cut(s) 207, 675
BstAFI CTTAAG 1 cut(s) 542
BstBAI YACGTR 1 cut(s) 934
BstC8I GCNNGC 3 cut(s) 128, 336, 939
BstDEI CTNAG 6 cut(s) 57, 195, 249, 986, 1010, 1242
BstDSI CCRYGG 1 cut(s) 1260
BstF5I GGATG 4 cut(s) 823, 850, 1135, 1178
BstH2I RGCGCY 1 cut(s) 1099
BstHHI GCGC 1 cut(s) 1098
BstMAI GTCTC 5 cut(s) 204, 260, 409, 886, 1298
BstMWI GCNNNNNNNGC 5 cut(s) 173, 340, 1095, 1107, 1233
BstNI CCWGG 1 cut(s) 815
BstNSI RCATGY 2 cut(s) 75, 1258
BstSCI CCNGG 3 cut(s) 813, 1047, 1105
BstSFI CTRYAG 2 cut(s) 174, 885
BstSLI GKGCMC 1 cut(s) 916
BstV1I GCAGC 6 cut(s) 160, 223, 648, 899, 1085, 1102
BstV2I GAAGAC 1 cut(s) 494
BtgI CCRYGG 1 cut(s) 1260
BtgZI GCGATG 1 cut(s) 905
BtsCI GGATG 4 cut(s) 823, 850, 1135, 1178
Cac8I GCNNGC 3 cut(s) 128, 336, 939
CciI TCATGA 1 cut(s) 490
CfoI GCGC 1 cut(s) 1098
Cfr13I GGNCC 2 cut(s) 367, 763
Csp6I GTAC 3 cut(s) 30, 717, 991
CviAII CATG 6 cut(s) 72, 139, 339, 491, 613, 1255
CviQI GTAC 3 cut(s) 30, 717, 991
DdeI CTNAG 6 cut(s) 57, 195, 249, 986, 1010, 1242
DrdI GACNNNNNNGTC 1 cut(s) 196
DseDI GACNNNNNNGTC 1 cut(s) 196
Eam1104I CTCTTC 2 cut(s) 207, 675
EarI CTCTTC 2 cut(s) 207, 675
EciI GGCGGA 3 cut(s) 819, 893, 1125
Eco31I GGTCTC 1 cut(s) 1298
Eco32I GATATC 1 cut(s) 272
Eco47I GGWCC 2 cut(s) 367, 763
Eco57I CTGAAG 2 cut(s) 413, 597
Eco72I CACGTG 1 cut(s) 934
EcoO109I RGGNCCY 1 cut(s) 763
EcoRII CCWGG 1 cut(s) 813
EcoRV GATATC 1 cut(s) 272
EcoT22I ATGCAT 1 cut(s) 525
FaeI CATG 6 cut(s) 75, 142, 342, 494, 616, 1258
FaqI GGGAC 1 cut(s) 749
FatI CATG 6 cut(s) 71, 138, 338, 490, 612, 1254
Fnu4HI GCNGC 6 cut(s) 174, 212, 662, 888, 1099, 1116
FokI GGATG 4 cut(s) 830, 837, 1142, 1165
Fsp4HI GCNGC 6 cut(s) 174, 212, 662, 888, 1099, 1116
FspBI CTAG 2 cut(s) 647, 1002
GlaI GCGC 1 cut(s) 1097
GluI GCNGC 6 cut(s) 174, 212, 662, 888, 1099, 1116
HaeII RGCGCY 1 cut(s) 1099
HapII CCGG 2 cut(s) 1048, 1107
HhaI GCGC 1 cut(s) 1098
Hin1II CATG 6 cut(s) 75, 142, 342, 494, 616, 1258
Hin6I GCGC 1 cut(s) 1096
HinP1I GCGC 1 cut(s) 1096
HincII GTYRAC 1 cut(s) 1167
HindII GTYRAC 1 cut(s) 1167
HindIII AAGCTT 1 cut(s) 128
HinfI GANTC 5 cut(s) 547, 749, 977, 1022, 1385
HpaII CCGG 2 cut(s) 1048, 1107
HphI GGTGA 1 cut(s) 1217
Hpy166II GTNNAC 1 cut(s) 1167
Hpy188I TCNGA 1 cut(s) 463
Hpy188III TCNNGA 8 cut(s) 104, 322, 356, 491, 944, 1026, 1182, 1336
Hpy8I GTNNAC 1 cut(s) 1167
Hpy99I CGWCG 1 cut(s) 1367
HpyAV CCTTC 4 cut(s) 273, 388, 572, 1324
HpyCH4III ACNGT 3 cut(s) 29, 797, 970
HpyCH4IV ACGT 3 cut(s) 116, 933, 1362
HpyCH4V TGCA 9 cut(s) 126, 142, 176, 316, 523, 887, 1082, 1133, 1313
HpyF10VI GCNNNNNNNGC 5 cut(s) 173, 340, 1095, 1107, 1233
HpyF3I CTNAG 6 cut(s) 57, 195, 249, 986, 1010, 1242
HpySE526I ACGT 3 cut(s) 116, 933, 1362
Hsp92II CATG 6 cut(s) 75, 142, 342, 494, 616, 1258
HspAI GCGC 1 cut(s) 1096
KflI GGGWCCC 1 cut(s) 763
LmnI GCTCC 3 cut(s) 604, 847, 1112
Lsp1109I GCAGC 6 cut(s) 160, 223, 648, 899, 1085, 1102
LweI GCATC 4 cut(s) 430, 532, 859, 1120
MaeI CTAG 2 cut(s) 647, 1002
MaeII ACGT 3 cut(s) 116, 933, 1362
MaeIII GTNAC 2 cut(s) 243, 823
MboII GAAGA 7 cut(s) 194, 209, 494, 494, 692, 828, 1431
MhlI GDGCHC 1 cut(s) 916
MluCI AATT 7 cut(s) 51, 88, 528, 555, 730, 1084, 1398
MlyI GAGTC 3 cut(s) 541, 971, 1031
Mph1103I ATGCAT 1 cut(s) 525
MroXI GAANNNNTTC 1 cut(s) 732
MseI TTAA 5 cut(s) 405, 543, 801, 873, 950
MslI CAYNNNNRTG 3 cut(s) 74, 1259, 1299
MspCI CTTAAG 1 cut(s) 542
MspI CCGG 2 cut(s) 1048, 1107
MspR9I CCNGG 3 cut(s) 815, 1049, 1107
Mva1269I GAATGC 1 cut(s) 1052
MvaI CCWGG 1 cut(s) 815
MwoI GCNNNNNNNGC 5 cut(s) 173, 340, 1095, 1107, 1233
NciI CCSGG 2 cut(s) 1049, 1107
NlaIII CATG 6 cut(s) 75, 142, 342, 494, 616, 1258
NlaIV GGNNCC 2 cut(s) 764, 765
NsiI ATGCAT 1 cut(s) 525
NspI RCATGY 2 cut(s) 75, 1258
OliI CACNNNNGTG 1 cut(s) 74
PagI TCATGA 1 cut(s) 490
PciI ACATGT 1 cut(s) 71
PctI GAATGC 1 cut(s) 1052
PdmI GAANNNNTTC 1 cut(s) 732
PfeI GAWTC 2 cut(s) 749, 1385
PflMI CCANNNNNTGG 1 cut(s) 779
PkrI GCNGC 6 cut(s) 175, 213, 663, 889, 1100, 1117
PleI GAGTC 3 cut(s) 541, 971, 1030
PmaCI CACGTG 1 cut(s) 934
PmlI CACGTG 1 cut(s) 934
PpsI GAGTC 3 cut(s) 541, 971, 1030
Ppu21I YACGTR 1 cut(s) 934
PpuMI RGGWCCY 1 cut(s) 763
PscI ACATGT 1 cut(s) 71
Psp1406I AACGTT 1 cut(s) 116
Psp5II RGGWCCY 1 cut(s) 763
Psp6I CCWGG 1 cut(s) 813
PspCI CACGTG 1 cut(s) 934
PspGI CCWGG 1 cut(s) 813
PspN4I GGNNCC 2 cut(s) 764, 765
PspPI GGNCC 2 cut(s) 367, 763
PspPPI RGGWCCY 1 cut(s) 763
PstI CTGCAG 2 cut(s) 178, 889
RsaI GTAC 3 cut(s) 31, 718, 992
RsaNI GTAC 3 cut(s) 30, 717, 991
RseI CAYNNNNRTG 3 cut(s) 74, 1259, 1299
SaqAI TTAA 5 cut(s) 405, 543, 801, 873, 950
SatI GCNGC 6 cut(s) 174, 212, 662, 888, 1099, 1116
Sau96I GGNCC 2 cut(s) 367, 763
SchI GAGTC 3 cut(s) 541, 971, 1031
ScrFI CCNGG 3 cut(s) 815, 1049, 1107
SduI GDGCHC 1 cut(s) 916
SfaNI GCATC 4 cut(s) 430, 532, 859, 1120
SfcI CTRYAG 2 cut(s) 174, 885
SinI GGWCC 2 cut(s) 367, 763
SmiMI CAYNNNNRTG 3 cut(s) 74, 1259, 1299
SmlI CTYRAG 4 cut(s) 322, 356, 542, 942
SmoI CTYRAG 4 cut(s) 322, 356, 542, 942
Sse9I AATT 7 cut(s) 51, 88, 528, 555, 730, 1084, 1398
SsiI CCGC 5 cut(s) 259, 498, 830, 904, 1110
SspI AATATT 2 cut(s) 238, 598
SspMI CTAG 2 cut(s) 647, 1002
StyD4I CCNGG 3 cut(s) 813, 1047, 1105
TaaI ACNGT 3 cut(s) 29, 797, 970
TaiI ACGT 3 cut(s) 119, 936, 1365
TaqI TCGA 5 cut(s) 39, 593, 1335, 1365, 1388
TasI AATT 7 cut(s) 51, 88, 528, 555, 730, 1084, 1398
TatI WGTACW 1 cut(s) 29
TfiI GAWTC 2 cut(s) 749, 1385
Tru1I TTAA 5 cut(s) 405, 543, 801, 873, 950
Tru9I TTAA 5 cut(s) 405, 543, 801, 873, 950
TseI GCWGC 6 cut(s) 173, 211, 661, 887, 1098, 1115
Van91I CCANNNNNTGG 1 cut(s) 779
Vha464I CTTAAG 1 cut(s) 542
VpaK11BI GGWCC 2 cut(s) 367, 763
XapI RAATTY 2 cut(s) 51, 730
XceI RCATGY 2 cut(s) 75, 1258
XmnI GAANNNNTTC 1 cut(s) 732
XspI CTAG 2 cut(s) 647, 1002
Zsp2I ATGCAT 1 cut(s) 525
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.