Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr15

Orthogroup ID

OG0007656

Physical Location & Seq

Genomic Coordinates Forward (+)

3130323 .. 3131910

Gene Structure 1588 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom15g05250.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 732 bp

ATGATGGAGTCCGAAAATGCTGCCGACGACTCCTCCTCGGTGGCCAGCCTCCTCCCGTTGGCCTCCGCCTCCCAGCAACCCTACGTCTCCGAGCTCCTCTCCTTCACCCTCGATCGCCTCCACAAGGAACCGGAGCTTCTCCGGGTCGATGCGGAGCGAATACAGCGGCAAATGCAGGAGGTGGCGGTGGCCAATTACCGAGCTTTCATTGCTGCTTCCGACGCGTTGGTCGCAATTCGAAACGAAGTGTCTTCCATTGACAAACATCTCGAGTCTCTGCTGGAGGAGACGCCGAAGTTGATGAATGGGTGCACTGAGTTTGTTGAATCTGCGGAGCAGATTTTGGAAAAGAGGAAATTGAACCAGACGTTGCTAGCCAATCACAGTACATTGCTCGACTTACTTGAAATCCCTCAGCTTATGGAGACATGTGTGAGGAATGGAAATTACGATGAAGCTCTTGACTTAGAAGCATTTGTTAGCAAGCTTTCAACCATGCACCCCAAATTGCCTGTTATTCAAGCTTTGACTGCAGAAGTCAGGCAGACCACTCAATCTCTTCTTTCTCAACTTCTTCAGAAACTTCGTTCAAATATTCAGTTACCTGAATGTCTCCGTATTATTGGATATTTACGTAGAATAGGAGTTTTTAGTGAGTACGAAATGCGTTTACAGTTTTTGAGATGTCGGGAGGCATGGCTTACTGGAATTCTGGAGGATCTGGACCAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Dor1

Protein Analysis

244

Amino Acids

27.59

Weight (kDa)

4.88

Isoelectric Point (pI)

52.03

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007656)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G11980 AT5G11980
fragaria_vesca	FvH4_2g31510 FvH4_2g31510 FvH4_2g31510
malus_domestica	MD08G1065800.v1.1 MD15G1055600.v1.1
prunus_persica	Prupe.1G408800_v2.0.a1
pyrus_communis	pycom08g05440 pycom15g05250 pycom15g05260
rosa_chinensis	RchiOBHm_Chr6g0311281
rosa_laevigata	RLG00000010422
rosa_multiflora	Rmu_sc0008536.1_g000003 Rmu_sc0013795.1_g000003
rosa_roxburghii	Rroxscaffold_7G00157800
rosa_rugosa	Rorug02G0372000 Rorug06G0387000
rosa_samantha	Rh6AG501700 Rh6BG512400 Rh6CG518100 Rh6DG504400 Rh7BG256700
rosa_wichuraiana	Rw6G043690

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	227
AccII	CGCG	1 cut(s)	224
AciI	CCGC	5 cut(s)	66, 152, 166, 185, 332
AclWI	GGATC	1 cut(s)	726
AcoI	YGGCCR	2 cut(s)	42, 189
AcsI	RAATTY	1 cut(s)	708
AcuI	CTGAAG	1 cut(s)	560
AcyI	GRCGYC	1 cut(s)	290
AfaI	GTAC	2 cut(s)	388, 659
AfiI	CCNNNNNNNGG	2 cut(s)	58, 124
AflIII	ACRYGT	2 cut(s)	222, 428
AgsI	TTSAA	6 cut(s)	326, 361, 407, 492, 521, 591
AluBI	AGCT	7 cut(s)	94, 136, 203, 418, 458, 487, 524
AluI	AGCT	7 cut(s)	94, 136, 203, 418, 458, 487, 524
Alw21I	GWGCWC	2 cut(s)	96, 314
Alw26I	GTCTC	5 cut(s)	91, 279, 281, 419, 617
Alw44I	GTGCAC	1 cut(s)	310
AlwI	GGATC	1 cut(s)	726
Ama87I	CYCGRG	1 cut(s)	269
AoxI	GGCC	3 cut(s)	42, 60, 189
ApaLI	GTGCAC	1 cut(s)	310
ApeKI	GCWGC	2 cut(s)	20, 212
ApoI	RAATTY	1 cut(s)	708
AspS9I	GGNCC	1 cut(s)	724
AsuC2I	CCSGG	1 cut(s)	143
AsuHPI	GGTGA	1 cut(s)	97
AsuII	TTCGAA	1 cut(s)	238
AsuNHI	GCTAGC	1 cut(s)	373
AvaI	CYCGRG	1 cut(s)	269
AvaII	GGWCC	1 cut(s)	724
BaeGI	GKGCMC	1 cut(s)	314
BalI	TGGCCA	2 cut(s)	44, 191
BanII	GRGCYC	1 cut(s)	96
BbsI	GAAGAC	1 cut(s)	243
Bbv12I	GWGCWC	2 cut(s)	96, 314
BbvCI	CCTCAGC	1 cut(s)	414
BbvI	GCAGC	2 cut(s)	7, 199
BcgI	CGANNNNNNTGC	1 cut(s)	36
BcnI	CCSGG	1 cut(s)	143
BcoDI	GTCTC	5 cut(s)	91, 279, 281, 419, 617
BfaI	CTAG	1 cut(s)	374
BfmI	CTRYAG	1 cut(s)	531
BisI	GCNGC	3 cut(s)	21, 167, 213
BlsI	GCNGC	3 cut(s)	22, 168, 214
Bme1390I	CCNGG	1 cut(s)	143
Bme18I	GGWCC	1 cut(s)	724
BmeT110I	CYCGRG	1 cut(s)	269
BmgT120I	GGNCC	1 cut(s)	724
BmiI	GGNNCC	1 cut(s)	129
BmrFI	CCNGG	1 cut(s)	143
BmsI	GCATC	1 cut(s)	139
BmtI	GCTAGC	1 cut(s)	377
BpiI	GAAGAC	1 cut(s)	243
BplI	GAGNNNNNCTC	2 cut(s)	83, 115
BpmI	CTGGAG	1 cut(s)	302
Bpu10I	CCTNAGC	1 cut(s)	414
Bpu14I	TTCGAA	1 cut(s)	238
BpuMI	CCSGG	1 cut(s)	143
BsaAI	YACGTR	1 cut(s)	635
BsaHI	GRCGYC	1 cut(s)	290
BsaJI	CCNNGG	1 cut(s)	36
BsaWI	WCCGGW	1 cut(s)	130
BsaXI	ACNNNNNCTCC	2 cut(s)	17, 47
Bsc4I	CCNNNNNNNGG	2 cut(s)	58, 124
Bse1I	ACTGG	2 cut(s)	709, 727
Bse3DI	GCAATG	2 cut(s)	207, 389
BseDI	CCNNGG	1 cut(s)	36
BseLI	CCNNNNNNNGG	2 cut(s)	58, 124
BseMI	GCAATG	2 cut(s)	207, 389
BseMII	CTCAG	2 cut(s)	306, 428
BseNI	ACTGG	2 cut(s)	709, 727
BseRI	GAGGAG	5 cut(s)	22, 25, 41, 86, 299
BseSI	GKGCMC	1 cut(s)	314
BseXI	GCAGC	2 cut(s)	7, 199
BseYI	CCCAGC	1 cut(s)	72
Bsh1236I	CGCG	1 cut(s)	224
Bsh1285I	CGRYCG	1 cut(s)	115
BshFI	GGCC	3 cut(s)	44, 62, 191
BsiEI	CGRYCG	1 cut(s)	115
BsiHKAI	GWGCWC	2 cut(s)	96, 314
BsiHKCI	CYCGRG	1 cut(s)	269
BsiSI	CCGG	2 cut(s)	131, 142
BslI	CCNNNNNNNGG	2 cut(s)	58, 124
BsmAI	GTCTC	5 cut(s)	91, 279, 281, 419, 617
BsmBI	CGTCTC	2 cut(s)	91, 281
BsnI	GGCC	3 cut(s)	44, 62, 191
BsoBI	CYCGRG	1 cut(s)	269
Bsp119I	TTCGAA	1 cut(s)	238
Bsp1286I	GDGCHC	2 cut(s)	96, 314
Bsp143I	GATC	2 cut(s)	112, 718
BspACI	CCGC	5 cut(s)	66, 152, 166, 185, 332
BspANI	GGCC	3 cut(s)	44, 62, 191
BspCNI	CTCAG	2 cut(s)	307, 427
BspFNI	CGCG	1 cut(s)	224
BspLI	GGNNCC	1 cut(s)	129
BspMAI	CTGCAG	1 cut(s)	535
BspOI	GCTAGC	1 cut(s)	377
BspPI	GGATC	1 cut(s)	726
BspT104I	TTCGAA	1 cut(s)	238
BsrDI	GCAATG	2 cut(s)	207, 389
BsrI	ACTGG	2 cut(s)	709, 727
BssECI	CCNNGG	1 cut(s)	36
BssMI	GATC	2 cut(s)	112, 718
BssNI	GRCGYC	1 cut(s)	290
Bst4CI	ACNGT	2 cut(s)	386, 675
Bst6I	CTCTTC	1 cut(s)	564
BstACI	GRCGYC	1 cut(s)	290
BstBAI	YACGTR	1 cut(s)	635
BstBI	TTCGAA	1 cut(s)	238
BstC8I	GCNNGC	3 cut(s)	46, 375, 485
BstDEI	CTNAG	3 cut(s)	315, 414, 466
BstENI	CCTNNNNNAGG	1 cut(s)	122
BstFNI	CGCG	1 cut(s)	224
BstKTI	GATC	2 cut(s)	115, 721
BstMAI	GTCTC	5 cut(s)	91, 279, 281, 419, 617
BstMBI	GATC	2 cut(s)	112, 718
BstMCI	CGRYCG	1 cut(s)	115
BstMWI	GCNNNNNNNGC	6 cut(s)	163, 172, 209, 221, 230, 530
BstNSI	RCATGY	1 cut(s)	432
BstSCI	CCNGG	1 cut(s)	141
BstSFI	CTRYAG	1 cut(s)	531
BstSLI	GKGCMC	1 cut(s)	314
BstSNI	TACGTA	1 cut(s)	635
BstUI	CGCG	1 cut(s)	224
BstV1I	GCAGC	2 cut(s)	7, 199
BstV2I	GAAGAC	1 cut(s)	243
BstX2I	RGATCY	1 cut(s)	718
BstYI	RGATCY	1 cut(s)	718
BsuRI	GGCC	3 cut(s)	44, 62, 191
BtsIMutI	CAGTG	1 cut(s)	312
Cac8I	GCNNGC	3 cut(s)	46, 375, 485
Cfr13I	GGNCC	1 cut(s)	724
CseI	GACGC	2 cut(s)	230, 298
Csp6I	GTAC	2 cut(s)	387, 658
CviAII	CATG	3 cut(s)	429, 496, 696
CviQI	GTAC	2 cut(s)	387, 658
DdeI	CTNAG	3 cut(s)	315, 414, 466
DpnI	GATC	2 cut(s)	114, 720
DpnII	GATC	2 cut(s)	112, 718
DrdI	GACNNNNNNGTC	1 cut(s)	227
DseDI	GACNNNNNNGTC	1 cut(s)	227
EaeI	YGGCCR	2 cut(s)	42, 189
Eam1104I	CTCTTC	1 cut(s)	564
EarI	CTCTTC	1 cut(s)	564
EciI	GGCGGA	1 cut(s)	55
Ecl136II	GAGCTC	1 cut(s)	94
Eco105I	TACGTA	1 cut(s)	635
Eco24I	GRGCYC	1 cut(s)	96
Eco47I	GGWCC	1 cut(s)	724
Eco53kI	GAGCTC	1 cut(s)	94
Eco57I	CTGAAG	1 cut(s)	560
Eco88I	CYCGRG	1 cut(s)	269
EcoICRI	GAGCTC	1 cut(s)	94
EcoNI	CCTNNNNNAGG	1 cut(s)	122
EcoRI	GAATTC	1 cut(s)	708
EcoT38I	GRGCYC	1 cut(s)	96
Esp3I	CGTCTC	2 cut(s)	91, 281
FaeI	CATG	3 cut(s)	432, 499, 699
FaiI	YATR	4 cut(s)	422, 430, 497, 697
FatI	CATG	3 cut(s)	428, 495, 695
Fnu4HI	GCNGC	3 cut(s)	21, 167, 213
FriOI	GRGCYC	1 cut(s)	96
Fsp4HI	GCNGC	3 cut(s)	21, 167, 213
FspBI	CTAG	1 cut(s)	374
GluI	GCNGC	3 cut(s)	21, 167, 213
GsaI	CCCAGC	1 cut(s)	76
GsuI	CTGGAG	1 cut(s)	302
HaeIII	GGCC	3 cut(s)	44, 62, 191
HapII	CCGG	2 cut(s)	131, 142
HgaI	GACGC	2 cut(s)	230, 298
Hin1I	GRCGYC	1 cut(s)	290
Hin1II	CATG	3 cut(s)	432, 499, 699
HindIII	AAGCTT	2 cut(s)	485, 522
HinfI	GANTC	4 cut(s)	8, 29, 272, 326
HpaII	CCGG	2 cut(s)	131, 142
HphI	GGTGA	1 cut(s)	97
Hpy166II	GTNNAC	2 cut(s)	312, 671
Hpy188I	TCNGA	4 cut(s)	13, 91, 220, 579
Hpy188III	TCNNGA	5 cut(s)	269, 461, 689, 713, 722
Hpy8I	GTNNAC	2 cut(s)	312, 671
Hpy99I	CGWCG	2 cut(s)	29, 224
HpyAV	CCTTC	1 cut(s)	112
HpyCH4III	ACNGT	2 cut(s)	386, 675
HpyCH4IV	ACGT	3 cut(s)	84, 368, 634
HpyCH4V	TGCA	4 cut(s)	175, 312, 499, 533
HpyF10VI	GCNNNNNNNGC	6 cut(s)	163, 172, 209, 221, 230, 530
HpyF3I	CTNAG	3 cut(s)	315, 414, 466
HpySE526I	ACGT	3 cut(s)	84, 368, 634
Hsp92I	GRCGYC	1 cut(s)	290
Hsp92II	CATG	3 cut(s)	432, 499, 699
Kzo9I	GATC	2 cut(s)	112, 718
LmnI	GCTCC	4 cut(s)	99, 133, 154, 334
Lsp1109I	GCAGC	2 cut(s)	7, 199
LweI	GCATC	1 cut(s)	139
MaeI	CTAG	1 cut(s)	374
MaeII	ACGT	3 cut(s)	84, 368, 634
MaeIII	GTNAC	1 cut(s)	600
MalI	GATC	2 cut(s)	114, 720
MboI	GATC	2 cut(s)	112, 718
MboII	GAAGA	3 cut(s)	243, 551, 566
MflI	RGATCY	1 cut(s)	718
MhlI	GDGCHC	2 cut(s)	96, 314
MlsI	TGGCCA	2 cut(s)	44, 191
MluCI	AATT	6 cut(s)	193, 234, 356, 445, 506, 708
MluI	ACGCGT	1 cut(s)	222
MluNI	TGGCCA	2 cut(s)	44, 191
MlyI	GAGTC	3 cut(s)	17, 23, 281
MmeI	TCCRAC	1 cut(s)	243
Mox20I	TGGCCA	2 cut(s)	44, 191
MscI	TGGCCA	2 cut(s)	44, 191
Msp20I	TGGCCA	2 cut(s)	44, 191
MspA1I	CMGCKG	1 cut(s)	166
MspI	CCGG	2 cut(s)	131, 142
MspR9I	CCNGG	1 cut(s)	143
MvnI	CGCG	1 cut(s)	224
MwoI	GCNNNNNNNGC	6 cut(s)	163, 172, 209, 221, 230, 530
NciI	CCSGG	1 cut(s)	143
NdeII	GATC	2 cut(s)	112, 718
NheI	GCTAGC	1 cut(s)	373
NlaIII	CATG	3 cut(s)	432, 499, 699
NlaIV	GGNNCC	1 cut(s)	129
NspI	RCATGY	1 cut(s)	432
NspV	TTCGAA	1 cut(s)	238
PaeR7I	CTCGAG	1 cut(s)	269
PciI	ACATGT	1 cut(s)	428
PfeI	GAWTC	1 cut(s)	326
PkrI	GCNGC	3 cut(s)	22, 168, 214
Ple19I	CGATCG	1 cut(s)	115
PleI	GAGTC	3 cut(s)	16, 23, 280
PpsI	GAGTC	3 cut(s)	16, 23, 280
Ppu21I	YACGTR	1 cut(s)	635
PscI	ACATGT	1 cut(s)	428
Psp124BI	GAGCTC	1 cut(s)	96
PspFI	CCCAGC	1 cut(s)	72
PspN4I	GGNNCC	1 cut(s)	129
PspPI	GGNCC	1 cut(s)	724
PstI	CTGCAG	1 cut(s)	535
PsuI	RGATCY	1 cut(s)	718
PvuI	CGATCG	1 cut(s)	115
RsaI	GTAC	2 cut(s)	388, 659
RsaNI	GTAC	2 cut(s)	387, 658
SacI	GAGCTC	1 cut(s)	96
SatI	GCNGC	3 cut(s)	21, 167, 213
Sau3AI	GATC	2 cut(s)	112, 718
Sau96I	GGNCC	1 cut(s)	724
SchI	GAGTC	3 cut(s)	17, 23, 281
ScrFI	CCNGG	1 cut(s)	143
SduI	GDGCHC	2 cut(s)	96, 314
SfaNI	GCATC	1 cut(s)	139
SfcI	CTRYAG	1 cut(s)	531
Sfr274I	CTCGAG	1 cut(s)	269
SfuI	TTCGAA	1 cut(s)	238
SinI	GGWCC	1 cut(s)	724
SlaI	CTCGAG	1 cut(s)	269
SmlI	CTYRAG	1 cut(s)	269
SmoI	CTYRAG	1 cut(s)	269
SnaBI	TACGTA	1 cut(s)	635
Sse9I	AATT	6 cut(s)	193, 234, 356, 445, 506, 708
SsiI	CCGC	5 cut(s)	66, 152, 166, 185, 332
SspI	AATATT	1 cut(s)	595
SspMI	CTAG	1 cut(s)	374
SstI	GAGCTC	1 cut(s)	96
StyD4I	CCNGG	1 cut(s)	141
TaaI	ACNGT	2 cut(s)	386, 675
TaiI	ACGT	3 cut(s)	87, 371, 637
TaqI	TCGA	5 cut(s)	111, 147, 238, 270, 396
TasI	AATT	6 cut(s)	193, 234, 356, 445, 506, 708
TatI	WGTACW	1 cut(s)	386
TauI	GCSGC	1 cut(s)	169
TfiI	GAWTC	1 cut(s)	326
TscAI	CASTG	1 cut(s)	319
TseI	GCWGC	2 cut(s)	20, 212
TspDTI	ATGAA	3 cut(s)	196, 317, 468
TspGWI	ACGGA	1 cut(s)	605
TspRI	CASTG	1 cut(s)	319
VneI	GTGCAC	1 cut(s)	310
VpaK11BI	GGWCC	1 cut(s)	724
XagI	CCTNNNNNAGG	1 cut(s)	122
XapI	RAATTY	1 cut(s)	708
XceI	RCATGY	1 cut(s)	432
XhoI	CTCGAG	1 cut(s)	269
XspI	CTAG	1 cut(s)	374

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.