Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7B

Orthogroup ID

OG0007656

Physical Location & Seq

Genomic Coordinates Forward (+)

23354710 .. 23365901

Gene Structure 11192 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7BG256700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1038 bp

ATGCAAGAGGTGGCGGTGGGGAATTACCGAGCGGTCATCGCCGCTTCGGACGCGTTGCTGGTGATTCGAGACGAAGTGTCCTCCATTGGCAAGCATCTTGAATCTCTGAGGAAGATGAACCAGACGTTGCTAGCGAATCACAGTACATTGCTCGACTTACTTGAAATTCCGCAGCTTATGGATACATGTGTGAGGAATGGAAATTATGATGAAGCTCTTGACTTAGAGACGTTTGTTTGCAAGCTTTCAACCATGCACCCCAAGTTGCCCGTTATACAAGCTCTGGCTGCAGAATTACCTGAGTGTCTCCGCATTATTGGATATCTACGTAGAATAGGGGTATTTAGTGAGTATGAAATGCGTCTGCAGTTCCTGAGATGTCGGCAAGTATGGCTTACTGGAATTCTTGAGGATTTGGACAAGAGGAACGCTTATGAGTACCTGAAGGGGATGATTAACTTCCAAAGACAGCATCTATTTGATGTTGTCAATCAATACAGAGCAATATTTTCTGATGATACATCAGGCAATGAAGAAAATCATGATGGCGGTCTTCTGTTCAGTTGGTCTATGCATCAAATTACCTCAATCCTTAAGACTCTGAAGATTATGCTTCCAAAAATAACTGAAGGCGGATCACTGTCGAACATTTTGGATCAATCCATGTATTGTGCTATGGGGCTTGGTTGGGTTGGGCTAGATTTCCGGGGACTGCTACCATCACTTTTTGAAGAGGCAGTTCTCAACTTGTTCGCAAAAAATATGAGTACAGCAGTTGAAAATTTTCAGTTGGTCTTGGATTCACATCGCTGGGTCCCACTACCAGCAGTTGGTTTTCCAACAAATAGTGTTAATGATGAAAGTCTGGATGATGTAACTCCGCCATCTTATCTTATGGAACATCCACCTCTTGCGGTGTGGTGGCTATGGCGGCAGTGGCACCCTGAAGTTGGATTTGATCTGGGAGAGATAGTCAAAAGAAACGGTTTTAAACTTCCAATAAACATGTCCTTGCTCAAAATTTTATTGAGAGAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Dor1

Protein Analysis

345

Amino Acids

39.38

Weight (kDa)

5.35

Isoelectric Point (pI)

42.94

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Dor1	PF04124	37 - 99	1.1e-23	Dor1-like family
Dor1	PF04124	98 - 260	2.7e-59	Dor1-like family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007656)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G11980 AT5G11980
fragaria_vesca	FvH4_2g31510 FvH4_2g31510 FvH4_2g31510
malus_domestica	MD08G1065800.v1.1 MD15G1055600.v1.1
prunus_persica	Prupe.1G408800_v2.0.a1
pyrus_communis	pycom08g05440 pycom15g05250 pycom15g05260
rosa_chinensis	RchiOBHm_Chr6g0311281
rosa_laevigata	RLG00000010422
rosa_multiflora	Rmu_sc0008536.1_g000003 Rmu_sc0013795.1_g000003
rosa_roxburghii	Rroxscaffold_7G00157800
rosa_rugosa	Rorug02G0372000 Rorug06G0387000
rosa_samantha	Rh6AG501700 Rh6BG512400 Rh6CG518100 Rh6DG504400 Rh7BG256700
rosa_wichuraiana	Rw6G043690

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	939
AccB7I	CCANNNNNTGG	1 cut(s)	830
AccBSI	CCGCTC	1 cut(s)	32
AccII	CGCG	1 cut(s)	53
AclWI	GGATC	2 cut(s)	643, 663
AcsI	RAATTY	4 cut(s)	165, 402, 781, 1020
AcuI	CTGAAG	4 cut(s)	464, 623, 648, 966
AfaI	GTAC	3 cut(s)	145, 440, 769
AfiI	CCNNNNNNNGG	2 cut(s)	830, 950
AflII	CTTAAG	1 cut(s)	593
AflIII	ACRYGT	3 cut(s)	51, 185, 1005
AgsI	TTSAA	5 cut(s)	101, 164, 249, 731, 779
AhdI	GACNNNNNGTC	1 cut(s)	76
AluBI	AGCT	4 cut(s)	175, 215, 244, 281
AluI	AGCT	4 cut(s)	175, 215, 244, 281
Alw26I	GTCTC	3 cut(s)	63, 221, 311
AlwI	GGATC	2 cut(s)	643, 663
AlwNI	CAGNNNCTG	1 cut(s)	373
ApeKI	GCWGC	2 cut(s)	172, 287
ApoI	RAATTY	4 cut(s)	165, 402, 781, 1020
Asp700I	GAANNNNTTC	1 cut(s)	783
AspS9I	GGNCC	1 cut(s)	814
AsuC2I	CCSGG	1 cut(s)	707
AsuHPI	GGTGA	1 cut(s)	73
AsuNHI	GCTAGC	1 cut(s)	130
AvaII	GGWCC	1 cut(s)	814
BaeI	ACNNNNGTAYC	2 cut(s)	174, 207
BanI	GGYRCC	1 cut(s)	939
BbsI	GAAGAC	1 cut(s)	545
BbvI	GCAGC	2 cut(s)	184, 274
BccI	CCATC	3 cut(s)	539, 727, 892
BciVI	GTATCC	1 cut(s)	175
BcnI	CCSGG	1 cut(s)	707
BcoDI	GTCTC	3 cut(s)	63, 221, 311
BfaI	CTAG	2 cut(s)	131, 698
BfmI	CTRYAG	2 cut(s)	288, 365
BfrI	CTTAAG	1 cut(s)	593
BfuI	GTATCC	1 cut(s)	175
BisI	GCNGC	4 cut(s)	42, 173, 288, 932
BlsI	GCNGC	4 cut(s)	43, 174, 289, 933
Bme1390I	CCNGG	1 cut(s)	707
Bme18I	GGWCC	1 cut(s)	814
BmeRI	GACNNNNNGTC	1 cut(s)	76
BmgT120I	GGNCC	1 cut(s)	814
BmiI	GGNNCC	3 cut(s)	815, 816, 941
BmrFI	CCNGG	1 cut(s)	707
BmsI	GCATC	3 cut(s)	103, 481, 583
BmtI	GCTAGC	1 cut(s)	134
BpiI	GAAGAC	1 cut(s)	545
BpuEI	CTTGAG	1 cut(s)	428
BpuMI	CCSGG	1 cut(s)	707
BsaAI	YACGTR	1 cut(s)	329
BsaBI	GATNNNNATC	1 cut(s)	804
BsaJI	CCNNGG	1 cut(s)	706
BsaXI	ACNNNNNCTCC	2 cut(s)	957, 987
Bsc4I	CCNNNNNNNGG	2 cut(s)	830, 950
Bse1I	ACTGG	1 cut(s)	403
Bse3DI	GCAATG	2 cut(s)	146, 535
Bse8I	GATNNNNATC	1 cut(s)	804
BseDI	CCNNGG	1 cut(s)	706
BseGI	GGATG	3 cut(s)	456, 874, 901
BseJI	GATNNNNATC	1 cut(s)	804
BseLI	CCNNNNNNNGG	2 cut(s)	830, 950
BseMI	GCAATG	2 cut(s)	146, 535
BseMII	CTCAG	3 cut(s)	98, 291, 365
BseNI	ACTGG	1 cut(s)	403
BseXI	GCAGC	2 cut(s)	184, 274
BseYI	CCCAGC	1 cut(s)	810
Bsh1236I	CGCG	1 cut(s)	53
BshNI	GGYRCC	1 cut(s)	939
BsiSI	CCGG	1 cut(s)	706
BslFI	GGGAC	2 cut(s)	723, 800
BslI	CCNNNNNNNGG	2 cut(s)	830, 950
BsmAI	GTCTC	3 cut(s)	63, 221, 311
BsmBI	CGTCTC	2 cut(s)	63, 221
BsmFI	GGGAC	2 cut(s)	723, 800
Bsp143I	GATC	3 cut(s)	635, 655, 958
BspCNI	CTCAG	3 cut(s)	99, 292, 366
BspFNI	CGCG	1 cut(s)	53
BspHI	TCATGA	1 cut(s)	541
BspLI	GGNNCC	3 cut(s)	815, 816, 941
BspMAI	CTGCAG	2 cut(s)	292, 369
BspOI	GCTAGC	1 cut(s)	134
BspPI	GGATC	2 cut(s)	643, 663
BspT107I	GGYRCC	1 cut(s)	939
BspTI	CTTAAG	1 cut(s)	593
BsrBI	CCGCTC	1 cut(s)	32
BsrDI	GCAATG	2 cut(s)	146, 535
BsrI	ACTGG	1 cut(s)	403
BssECI	CCNNGG	1 cut(s)	706
BssMI	GATC	3 cut(s)	635, 655, 958
Bst4CI	ACNGT	3 cut(s)	143, 642, 986
Bst6I	CTCTTC	1 cut(s)	726
BstAFI	CTTAAG	1 cut(s)	593
BstBAI	YACGTR	1 cut(s)	329
BstC8I	GCNNGC	3 cut(s)	92, 132, 242
BstDEI	CTNAG	4 cut(s)	107, 223, 300, 374
BstF5I	GGATG	3 cut(s)	456, 874, 901
BstFNI	CGCG	1 cut(s)	53
BstKTI	GATC	3 cut(s)	638, 658, 961
BstMAI	GTCTC	3 cut(s)	63, 221, 311
BstMBI	GATC	3 cut(s)	635, 655, 958
BstMWI	GCNNNNNNNGC	6 cut(s)	38, 50, 287, 391, 931, 937
BstNSI	RCATGY	2 cut(s)	189, 1009
BstSCI	CCNGG	1 cut(s)	705
BstSFI	CTRYAG	2 cut(s)	288, 365
BstSNI	TACGTA	1 cut(s)	329
BstUI	CGCG	1 cut(s)	53
BstV1I	GCAGC	2 cut(s)	184, 274
BstV2I	GAAGAC	1 cut(s)	545
BsuI	GTATCC	1 cut(s)	175
BtgZI	GCGATG	2 cut(s)	22, 791
BtsCI	GGATG	3 cut(s)	456, 874, 901
BtsI	GCAGTG	1 cut(s)	941
BtsIMutI	CAGTG	2 cut(s)	638, 941
Cac8I	GCNNGC	3 cut(s)	92, 132, 242
CaiI	CAGNNNCTG	1 cut(s)	373
CciI	TCATGA	1 cut(s)	541
Cfr13I	GGNCC	1 cut(s)	814
CseI	GACGC	2 cut(s)	59, 350
Csp6I	GTAC	3 cut(s)	144, 439, 768
CviAII	CATG	5 cut(s)	186, 253, 542, 664, 1006
CviJI	RGCY	9 cut(s)	175, 215, 244, 281, 287, 394, 682, 697, 925
CviKI_1	RGCY	9 cut(s)	175, 215, 244, 281, 287, 394, 682, 697, 925
CviQI	GTAC	3 cut(s)	144, 439, 768
DdeI	CTNAG	4 cut(s)	107, 223, 300, 374
DpnI	GATC	3 cut(s)	637, 657, 960
DpnII	GATC	3 cut(s)	635, 655, 958
DraI	TTTAAA	1 cut(s)	991
DriI	GACNNNNNGTC	1 cut(s)	76
Eam1104I	CTCTTC	1 cut(s)	726
Eam1105I	GACNNNNNGTC	1 cut(s)	76
EarI	CTCTTC	1 cut(s)	726
EciI	GGCGGA	2 cut(s)	648, 870
Eco105I	TACGTA	1 cut(s)	329
Eco32I	GATATC	1 cut(s)	323
Eco47I	GGWCC	1 cut(s)	814
Eco57I	CTGAAG	4 cut(s)	464, 623, 648, 966
EcoO109I	RGGNCCY	1 cut(s)	814
EcoRI	GAATTC	1 cut(s)	402
EcoRV	GATATC	1 cut(s)	323
EcoT22I	ATGCAT	1 cut(s)	576
Esp3I	CGTCTC	2 cut(s)	63, 221
FaeI	CATG	5 cut(s)	189, 256, 545, 667, 1009
FalI	AAGNNNNNCTT	2 cut(s)	378, 410
FaqI	GGGAC	2 cut(s)	723, 800
FatI	CATG	5 cut(s)	185, 252, 541, 663, 1005
Fnu4HI	GCNGC	4 cut(s)	42, 173, 288, 932
FokI	GGATG	3 cut(s)	463, 881, 888
Fsp4HI	GCNGC	4 cut(s)	42, 173, 288, 932
FspBI	CTAG	2 cut(s)	131, 698
GluI	GCNGC	4 cut(s)	42, 173, 288, 932
GsaI	CCCAGC	1 cut(s)	814
HapII	CCGG	1 cut(s)	706
HgaI	GACGC	2 cut(s)	59, 350
Hin1II	CATG	5 cut(s)	189, 256, 545, 667, 1009
HindIII	AAGCTT	1 cut(s)	242
HinfI	GANTC	5 cut(s)	64, 101, 136, 598, 800
HpaII	CCGG	1 cut(s)	706
HphI	GGTGA	1 cut(s)	73
Hpy188I	TCNGA	4 cut(s)	49, 108, 514, 603
Hpy188III	TCNNGA	7 cut(s)	68, 98, 218, 373, 407, 542, 866
HpyAV	CCTTC	2 cut(s)	439, 623
HpyCH4III	ACNGT	3 cut(s)	143, 642, 986
HpyCH4IV	ACGT	3 cut(s)	125, 230, 328
HpyCH4V	TGCA	6 cut(s)	4, 240, 256, 290, 367, 574
HpyF10VI	GCNNNNNNNGC	6 cut(s)	38, 50, 287, 391, 931, 937
HpyF3I	CTNAG	4 cut(s)	107, 223, 300, 374
HpySE526I	ACGT	3 cut(s)	125, 230, 328
Hsp92II	CATG	5 cut(s)	189, 256, 545, 667, 1009
KflI	GGGWCCC	1 cut(s)	814
Kzo9I	GATC	3 cut(s)	635, 655, 958
Lsp1109I	GCAGC	2 cut(s)	184, 274
LweI	GCATC	3 cut(s)	103, 481, 583
MaeI	CTAG	2 cut(s)	131, 698
MaeII	ACGT	3 cut(s)	125, 230, 328
MaeIII	GTNAC	1 cut(s)	874
MalI	GATC	3 cut(s)	637, 657, 960
MbiI	CCGCTC	1 cut(s)	32
MboI	GATC	3 cut(s)	635, 655, 958
MboII	GAAGA	5 cut(s)	124, 545, 545, 616, 743
MluCI	AATT	8 cut(s)	22, 165, 202, 293, 402, 579, 781, 1020
MluI	ACGCGT	1 cut(s)	51
MlyI	GAGTC	1 cut(s)	592
MmeI	TCCRAC	2 cut(s)	863, 931
MnlI	CCTC	8 cut(s)	91, 102, 186, 403, 417, 595, 727, 918
Mph1103I	ATGCAT	1 cut(s)	576
MroXI	GAANNNNTTC	1 cut(s)	783
MseI	TTAA	4 cut(s)	456, 594, 852, 990
MspCI	CTTAAG	1 cut(s)	593
MspI	CCGG	1 cut(s)	706
MspR9I	CCNGG	1 cut(s)	707
MvnI	CGCG	1 cut(s)	53
MwoI	GCNNNNNNNGC	6 cut(s)	38, 50, 287, 391, 931, 937
NciI	CCSGG	1 cut(s)	707
NdeII	GATC	3 cut(s)	635, 655, 958
NheI	GCTAGC	1 cut(s)	130
NlaIII	CATG	5 cut(s)	189, 256, 545, 667, 1009
NlaIV	GGNNCC	3 cut(s)	815, 816, 941
NsiI	ATGCAT	1 cut(s)	576
NspI	RCATGY	2 cut(s)	189, 1009
PagI	TCATGA	1 cut(s)	541
PciI	ACATGT	2 cut(s)	185, 1005
PcsI	WCGNNNNNNNCGW	1 cut(s)	131
PdmI	GAANNNNTTC	1 cut(s)	783
PfeI	GAWTC	4 cut(s)	64, 101, 136, 800
PflMI	CCANNNNNTGG	1 cut(s)	830
PkrI	GCNGC	4 cut(s)	43, 174, 289, 933
PleI	GAGTC	1 cut(s)	592
PpsI	GAGTC	1 cut(s)	592
Ppu21I	YACGTR	1 cut(s)	329
PpuMI	RGGWCCY	1 cut(s)	814
PscI	ACATGT	2 cut(s)	185, 1005
Psp5II	RGGWCCY	1 cut(s)	814
PspFI	CCCAGC	1 cut(s)	810
PspN4I	GGNNCC	3 cut(s)	815, 816, 941
PspPI	GGNCC	1 cut(s)	814
PspPPI	RGGWCCY	1 cut(s)	814
PstI	CTGCAG	2 cut(s)	292, 369
PstNI	CAGNNNCTG	1 cut(s)	373
RsaI	GTAC	3 cut(s)	145, 440, 769
RsaNI	GTAC	3 cut(s)	144, 439, 768
SaqAI	TTAA	4 cut(s)	456, 594, 852, 990
SatI	GCNGC	4 cut(s)	42, 173, 288, 932
Sau3AI	GATC	3 cut(s)	635, 655, 958
Sau96I	GGNCC	1 cut(s)	814
SchI	GAGTC	1 cut(s)	592
ScrFI	CCNGG	1 cut(s)	707
SfaNI	GCATC	3 cut(s)	103, 481, 583
SfcI	CTRYAG	2 cut(s)	288, 365
SinI	GGWCC	1 cut(s)	814
SmlI	CTYRAG	2 cut(s)	407, 593
SmoI	CTYRAG	2 cut(s)	407, 593
SnaBI	TACGTA	1 cut(s)	329
Sse9I	AATT	8 cut(s)	22, 165, 202, 293, 402, 579, 781, 1020
SspI	AATATT	1 cut(s)	507
SspMI	CTAG	2 cut(s)	131, 698
StyD4I	CCNGG	1 cut(s)	705
TaaI	ACNGT	3 cut(s)	143, 642, 986
TaiI	ACGT	3 cut(s)	128, 233, 331
TaqI	TCGA	3 cut(s)	67, 153, 644
TasI	AATT	8 cut(s)	22, 165, 202, 293, 402, 579, 781, 1020
TatI	WGTACW	2 cut(s)	143, 767
TauI	GCSGC	2 cut(s)	44, 934
TfiI	GAWTC	4 cut(s)	64, 101, 136, 800
Tru1I	TTAA	4 cut(s)	456, 594, 852, 990
Tru9I	TTAA	4 cut(s)	456, 594, 852, 990
TscAI	CASTG	2 cut(s)	645, 941
TseI	GCWGC	2 cut(s)	172, 287
TspDTI	ATGAA	5 cut(s)	131, 225, 369, 546, 873
TspRI	CASTG	2 cut(s)	645, 941
Van91I	CCANNNNNTGG	1 cut(s)	830
Vha464I	CTTAAG	1 cut(s)	593
VpaK11BI	GGWCC	1 cut(s)	814
XapI	RAATTY	4 cut(s)	165, 402, 781, 1020
XceI	RCATGY	2 cut(s)	189, 1009
XmnI	GAANNNNTTC	1 cut(s)	783
XspI	CTAG	2 cut(s)	131, 698
Zsp2I	ATGCAT	1 cut(s)	576

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.