Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr15

Orthogroup ID

OG0007656

Physical Location & Seq

Genomic Coordinates Forward (+)

3131953 .. 3134038

Gene Structure 2086 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom15g05260.4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 966 bp

ATGCATCTTTTTGATGTTGTTAACCAATATAGAGCAATATTTGCTGATGATACATCAGGCAGTGAAGAAAATTATGACGGTGGTCTTCTTTTCAGTTGGGCTATGCATATAATTACTTCACACCTGAAGACTCTCAAAATTCTGCTTCCAAAGATAACTGAAGGCGGATCTTTATCAAATATCTTGGATCAATGCATGTATTGTGCTATGGGACTTGGTTGGGTTGGGCTAGATTTCCGGGGCTTGCTGCCATCACTGTTTGAAGAGGCAGTTCTCAACTTGTTCTCAAAAAACATGAGCACAGCAGTTGAGAATTTTGAGGTGGTCTTGGATTCACATCGTTGGGTCCCACTACCAGCAGTTGGCTTTTCGTCGAACAGTCATGGTGATGAAAATCAGGATGATGTAACCCCGCCATCTTATCTTATGGAACATCCACCTCTTGCTGTTTTTGTTAATGGCGTGTCTGCAGCAATGAACGACCTCCGCCCCTGTGCCCCAATAAGTTTAAAGCATGTGCTTGCTCAAGAGTTGATCAAGGGATTGCAGGCTGTTTCTGATTCTTTACTGCGGTACAATACAAATCGGATGCTGAAAGAACACGAGGCTGGACTTTTCCTCTCACTTTGTCGAGCATTTATTGAGGTTACTTACCCGCACTGTGCCACATGCTTTGGCCGCTGTTACCCTGGTGGAGCTGCTTTAATCATGGATGCAAAGAGTCTGTATGATGGGATTGGCCGCCTATTGACAGTCGCCACTCCATCAAGAGGACTCACGAAACCTGTTGGTGATGGAAACGGAGATGGAAATGAGAATGAAAATGAAAAGAACGTAACTGAGAACGGTGACGTGTCTGCAGTAGAAAATAGGGTCTCGCCGGTTGTTGAAGAAACCGATAATACCAACTCTGATGAGGGGGAACAGAAAAGCCCCACTTTGCAAACAGAGGAAGAGACGCACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Dor1

Protein Analysis

322

Amino Acids

35.1

Weight (kDa)

4.7

Isoelectric Point (pI)

40.08

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007656)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G11980 AT5G11980
fragaria_vesca	FvH4_2g31510 FvH4_2g31510 FvH4_2g31510
malus_domestica	MD08G1065800.v1.1 MD15G1055600.v1.1
prunus_persica	Prupe.1G408800_v2.0.a1
pyrus_communis	pycom08g05440 pycom15g05250 pycom15g05260
rosa_chinensis	RchiOBHm_Chr6g0311281
rosa_laevigata	RLG00000010422
rosa_multiflora	Rmu_sc0008536.1_g000003 Rmu_sc0013795.1_g000003
rosa_roxburghii	Rroxscaffold_7G00157800
rosa_rugosa	Rorug02G0372000 Rorug06G0387000
rosa_samantha	Rh6AG501700 Rh6BG512400 Rh6CG518100 Rh6DG504400 Rh7BG256700
rosa_wichuraiana	Rw6G043690

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	362
AciI	CCGC	7 cut(s)	165, 413, 487, 571, 656, 679, 742
AclWI	GGATC	2 cut(s)	175, 195
AcoI	YGGCCR	2 cut(s)	676, 739
AcsI	RAATTY	2 cut(s)	138, 313
AcuI	CTGAAG	2 cut(s)	146, 180
AfaI	GTAC	1 cut(s)	575
AfiI	CCNNNNNNNGG	2 cut(s)	362, 770
AflIII	ACRYGT	1 cut(s)	852
AgsI	TTSAA	2 cut(s)	263, 890
AjiI	CACGTC	1 cut(s)	853
AjnI	CCWGG	1 cut(s)	688
AluBI	AGCT	1 cut(s)	698
AluI	AGCT	1 cut(s)	698
Alw21I	GWGCWC	1 cut(s)	302
Alw26I	GTCTC	2 cut(s)	880, 950
AlwI	GGATC	2 cut(s)	175, 195
AoxI	GGCC	2 cut(s)	676, 739
ApeKI	GCWGC	3 cut(s)	247, 470, 698
ApoI	RAATTY	2 cut(s)	138, 313
AspS9I	GGNCC	1 cut(s)	346
AsuC2I	CCSGG	1 cut(s)	239
AsuHPI	GGTGA	3 cut(s)	398, 803, 860
AvaII	GGWCC	1 cut(s)	346
BaeGI	GKGCMC	1 cut(s)	499
BauI	CACGAG	1 cut(s)	602
BbsI	GAAGAC	2 cut(s)	77, 134
Bbv12I	GWGCWC	1 cut(s)	302
BbvI	GCAGC	3 cut(s)	234, 482, 685
BccI	CCATC	6 cut(s)	259, 424, 725, 772, 788, 800
BciT130I	CCWGG	1 cut(s)	690
BclI	TGATCA	1 cut(s)	534
BcnI	CCSGG	1 cut(s)	239
BcoDI	GTCTC	2 cut(s)	880, 950
BfaI	CTAG	1 cut(s)	230
BfmI	CTRYAG	2 cut(s)	468, 858
BisI	GCNGC	5 cut(s)	248, 471, 679, 699, 742
BlsI	GCNGC	5 cut(s)	249, 472, 680, 700, 743
Bme1390I	CCNGG	2 cut(s)	239, 690
Bme18I	GGWCC	1 cut(s)	346
BmgBI	CACGTC	1 cut(s)	853
BmgT120I	GGNCC	1 cut(s)	346
BmiI	GGNNCC	2 cut(s)	347, 348
BmrFI	CCNGG	2 cut(s)	239, 690
BmsI	GCATC	3 cut(s)	13, 579, 703
BoxI	GACNNNNGTC	1 cut(s)	81
BpiI	GAAGAC	2 cut(s)	77, 134
BpuEI	CTTGAG	1 cut(s)	510
BpuMI	CCSGG	1 cut(s)	239
BsaBI	GATNNNNATC	3 cut(s)	172, 336, 393
BsaI	GGTCTC	1 cut(s)	880
BsaJI	CCNNGG	2 cut(s)	238, 688
Bsc4I	CCNNNNNNNGG	2 cut(s)	362, 770
Bse118I	RCCGGY	1 cut(s)	880
Bse3DI	GCAATG	1 cut(s)	480
Bse8I	GATNNNNATC	3 cut(s)	172, 336, 393
BseBI	CCWGG	1 cut(s)	690
BseDI	CCNNGG	2 cut(s)	238, 688
BseGI	GGATG	4 cut(s)	406, 433, 594, 718
BseJI	GATNNNNATC	3 cut(s)	172, 336, 393
BseLI	CCNNNNNNNGG	2 cut(s)	362, 770
BseMI	GCAATG	1 cut(s)	480
BseMII	CTCAG	1 cut(s)	831
BseSI	GKGCMC	1 cut(s)	499
BseXI	GCAGC	3 cut(s)	234, 482, 685
BshFI	GGCC	2 cut(s)	678, 741
BsiHKAI	GWGCWC	1 cut(s)	302
BsiSI	CCGG	2 cut(s)	238, 881
BslFI	GGGAC	2 cut(s)	225, 332
BslI	CCNNNNNNNGG	2 cut(s)	362, 770
BsmAI	GTCTC	2 cut(s)	880, 950
BsmBI	CGTCTC	1 cut(s)	950
BsmFI	GGGAC	2 cut(s)	225, 332
BsnI	GGCC	2 cut(s)	678, 741
Bso31I	GGTCTC	1 cut(s)	880
Bsp1286I	GDGCHC	2 cut(s)	302, 499
Bsp143I	GATC	3 cut(s)	167, 187, 534
BspACI	CCGC	7 cut(s)	165, 413, 487, 571, 656, 679, 742
BspANI	GGCC	2 cut(s)	678, 741
BspCNI	CTCAG	1 cut(s)	832
BspLI	GGNNCC	2 cut(s)	347, 348
BspMAI	CTGCAG	2 cut(s)	472, 862
BspPI	GGATC	2 cut(s)	175, 195
BspTNI	GGTCTC	1 cut(s)	880
BsrDI	GCAATG	1 cut(s)	480
BsrFI	RCCGGY	1 cut(s)	880
BssAI	RCCGGY	1 cut(s)	880
BssECI	CCNNGG	2 cut(s)	238, 688
BssMI	GATC	3 cut(s)	167, 187, 534
BssSI	CACGAG	1 cut(s)	602
Bst2BI	CACGAG	1 cut(s)	602
Bst2UI	CCWGG	1 cut(s)	690
Bst4CI	ACNGT	6 cut(s)	80, 258, 380, 662, 754, 848
Bst6I	CTCTTC	2 cut(s)	258, 948
BstAPI	GCANNNNNTGC	1 cut(s)	41
BstC8I	GCNNGC	3 cut(s)	245, 522, 549
BstDEI	CTNAG	1 cut(s)	840
BstF5I	GGATG	4 cut(s)	406, 433, 594, 718
BstKTI	GATC	3 cut(s)	170, 190, 537
BstMAI	GTCTC	2 cut(s)	880, 950
BstMBI	GATC	3 cut(s)	167, 187, 534
BstMWI	GCNNNNNNNGC	2 cut(s)	41, 678
BstNI	CCWGG	1 cut(s)	690
BstNSI	RCATGY	3 cut(s)	199, 518, 672
BstPAI	GACNNNNGTC	1 cut(s)	81
BstSCI	CCNGG	2 cut(s)	237, 688
BstSFI	CTRYAG	2 cut(s)	468, 858
BstSLI	GKGCMC	1 cut(s)	499
BstV1I	GCAGC	3 cut(s)	234, 482, 685
BstV2I	GAAGAC	2 cut(s)	77, 134
BstX2I	RGATCY	1 cut(s)	167
BstYI	RGATCY	1 cut(s)	167
BsuRI	GGCC	2 cut(s)	678, 741
BtrI	CACGTC	1 cut(s)	853
BtsCI	GGATG	4 cut(s)	406, 433, 594, 718
BtsI	GCAGTG	1 cut(s)	67
BtsIMutI	CAGTG	4 cut(s)	67, 254, 658, 961
Cac8I	GCNNGC	3 cut(s)	245, 522, 549
Cfr10I	RCCGGY	1 cut(s)	880
Cfr13I	GGNCC	1 cut(s)	346
Csp6I	GTAC	1 cut(s)	574
CspCI	CAANNNNNGTGG	2 cut(s)	655, 690
CviAII	CATG	6 cut(s)	196, 295, 383, 515, 669, 709
CviQI	GTAC	1 cut(s)	574
DdeI	CTNAG	1 cut(s)	840
DpnI	GATC	3 cut(s)	169, 189, 536
DpnII	GATC	3 cut(s)	167, 187, 534
DraI	TTTAAA	1 cut(s)	510
EaeI	YGGCCR	2 cut(s)	676, 739
Eam1104I	CTCTTC	2 cut(s)	258, 948
EarI	CTCTTC	2 cut(s)	258, 948
EciI	GGCGGA	2 cut(s)	180, 476
Eco31I	GGTCTC	1 cut(s)	880
Eco47I	GGWCC	1 cut(s)	346
Eco57I	CTGAAG	2 cut(s)	146, 180
EcoO109I	RGGNCCY	1 cut(s)	346
EcoRII	CCWGG	1 cut(s)	688
EcoT22I	ATGCAT	3 cut(s)	6, 108, 197
Esp3I	CGTCTC	1 cut(s)	950
FaeI	CATG	6 cut(s)	199, 298, 386, 518, 672, 712
FalI	AAGNNNNNCTT	2 cut(s)	922, 954
FaqI	GGGAC	2 cut(s)	225, 332
FatI	CATG	6 cut(s)	195, 294, 382, 514, 668, 708
FauI	CCCGC	2 cut(s)	420, 663
FbaI	TGATCA	1 cut(s)	534
Fnu4HI	GCNGC	5 cut(s)	248, 471, 679, 699, 742
FokI	GGATG	4 cut(s)	413, 420, 601, 725
Fsp4HI	GCNGC	5 cut(s)	248, 471, 679, 699, 742
FspBI	CTAG	1 cut(s)	230
GluI	GCNGC	5 cut(s)	248, 471, 679, 699, 742
HaeIII	GGCC	2 cut(s)	678, 741
HapII	CCGG	2 cut(s)	238, 881
Hin1II	CATG	6 cut(s)	199, 298, 386, 518, 672, 712
HincII	GTYRAC	1 cut(s)	22
HindII	GTYRAC	1 cut(s)	22
HinfI	GANTC	5 cut(s)	130, 332, 560, 721, 774
HpaI	GTTAAC	1 cut(s)	22
HpaII	CCGG	2 cut(s)	238, 881
HphI	GGTGA	3 cut(s)	398, 803, 860
Hpy166II	GTNNAC	1 cut(s)	22
Hpy188I	TCNGA	3 cut(s)	559, 588, 913
Hpy188III	TCNNGA	4 cut(s)	398, 527, 768, 778
Hpy8I	GTNNAC	1 cut(s)	22
Hpy99I	CGWCG	1 cut(s)	376
HpyAV	CCTTC	1 cut(s)	155
HpyCH4III	ACNGT	6 cut(s)	80, 258, 380, 662, 754, 848
HpyCH4IV	ACGT	2 cut(s)	834, 852
HpyCH4V	TGCA	8 cut(s)	4, 106, 195, 470, 547, 716, 860, 943
HpyF10VI	GCNNNNNNNGC	2 cut(s)	41, 678
HpyF3I	CTNAG	1 cut(s)	840
HpySE526I	ACGT	2 cut(s)	834, 852
Hsp92II	CATG	6 cut(s)	199, 298, 386, 518, 672, 712
KflI	GGGWCCC	1 cut(s)	346
Ksp22I	TGATCA	1 cut(s)	534
KspAI	GTTAAC	1 cut(s)	22
Kzo9I	GATC	3 cut(s)	167, 187, 534
LmnI	GCTCC	1 cut(s)	695
Lsp1109I	GCAGC	3 cut(s)	234, 482, 685
LweI	GCATC	3 cut(s)	13, 579, 703
MaeI	CTAG	1 cut(s)	230
MaeII	ACGT	2 cut(s)	834, 852
MaeIII	GTNAC	5 cut(s)	406, 646, 683, 835, 848
MalI	GATC	3 cut(s)	169, 189, 536
MboI	GATC	3 cut(s)	167, 187, 534
MboII	GAAGA	6 cut(s)	77, 77, 139, 275, 902, 965
MflI	RGATCY	1 cut(s)	167
MhlI	GDGCHC	2 cut(s)	302, 499
MluCI	AATT	4 cut(s)	70, 111, 138, 313
MlyI	GAGTC	3 cut(s)	124, 730, 768
Mph1103I	ATGCAT	3 cut(s)	6, 108, 197
MseI	TTAA	4 cut(s)	21, 456, 509, 704
MslI	CAYNNNNRTG	1 cut(s)	387
MspA1I	CMGCKG	1 cut(s)	681
MspI	CCGG	2 cut(s)	238, 881
MspR9I	CCNGG	2 cut(s)	239, 690
MvaI	CCWGG	1 cut(s)	690
MwoI	GCNNNNNNNGC	2 cut(s)	41, 678
NciI	CCSGG	1 cut(s)	239
NdeII	GATC	3 cut(s)	167, 187, 534
NlaIII	CATG	6 cut(s)	199, 298, 386, 518, 672, 712
NlaIV	GGNNCC	2 cut(s)	347, 348
NmuCI	GTSAC	1 cut(s)	848
NsiI	ATGCAT	3 cut(s)	6, 108, 197
NspI	RCATGY	3 cut(s)	199, 518, 672
PfeI	GAWTC	2 cut(s)	332, 560
PflMI	CCANNNNNTGG	1 cut(s)	362
PkrI	GCNGC	5 cut(s)	249, 472, 680, 700, 743
PleI	GAGTC	3 cut(s)	124, 729, 768
PpsI	GAGTC	3 cut(s)	124, 729, 768
PpuMI	RGGWCCY	1 cut(s)	346
PshAI	GACNNNNGTC	1 cut(s)	81
Psp5II	RGGWCCY	1 cut(s)	346
Psp6I	CCWGG	1 cut(s)	688
PspGI	CCWGG	1 cut(s)	688
PspN4I	GGNNCC	2 cut(s)	347, 348
PspPI	GGNCC	1 cut(s)	346
PspPPI	RGGWCCY	1 cut(s)	346
PstI	CTGCAG	2 cut(s)	472, 862
PsuI	RGATCY	1 cut(s)	167
RsaI	GTAC	1 cut(s)	575
RsaNI	GTAC	1 cut(s)	574
RseI	CAYNNNNRTG	1 cut(s)	387
SaqAI	TTAA	4 cut(s)	21, 456, 509, 704
SatI	GCNGC	5 cut(s)	248, 471, 679, 699, 742
Sau3AI	GATC	3 cut(s)	167, 187, 534
Sau96I	GGNCC	1 cut(s)	346
SchI	GAGTC	3 cut(s)	124, 730, 768
ScrFI	CCNGG	2 cut(s)	239, 690
SduI	GDGCHC	2 cut(s)	302, 499
SetI	ASST	9 cut(s)	126, 324, 442, 486, 648, 700, 787, 837, 855
SfaNI	GCATC	3 cut(s)	13, 579, 703
SfcI	CTRYAG	2 cut(s)	468, 858
SinI	GGWCC	1 cut(s)	346
SmiMI	CAYNNNNRTG	1 cut(s)	387
SmlI	CTYRAG	1 cut(s)	525
SmoI	CTYRAG	1 cut(s)	525
Sse9I	AATT	4 cut(s)	70, 111, 138, 313
SsiI	CCGC	7 cut(s)	165, 413, 487, 571, 656, 679, 742
SspI	AATATT	1 cut(s)	39
SspMI	CTAG	1 cut(s)	230
StyD4I	CCNGG	2 cut(s)	237, 688
TaaI	ACNGT	6 cut(s)	80, 258, 380, 662, 754, 848
TaiI	ACGT	2 cut(s)	837, 855
TaqI	TCGA	2 cut(s)	374, 631
TasI	AATT	4 cut(s)	70, 111, 138, 313
TauI	GCSGC	2 cut(s)	681, 744
TfiI	GAWTC	2 cut(s)	332, 560
Tru1I	TTAA	4 cut(s)	21, 456, 509, 704
Tru9I	TTAA	4 cut(s)	21, 456, 509, 704
TscAI	CASTG	3 cut(s)	67, 261, 665
TseFI	GTSAC	1 cut(s)	848
TseI	GCWGC	3 cut(s)	247, 470, 698
Tsp45I	GTSAC	1 cut(s)	848
TspDTI	ATGAA	4 cut(s)	405, 491, 834, 840
TspGWI	ACGGA	1 cut(s)	816
TspRI	CASTG	3 cut(s)	67, 261, 665
Van91I	CCANNNNNTGG	1 cut(s)	362
VpaK11BI	GGWCC	1 cut(s)	346
XapI	RAATTY	2 cut(s)	138, 313
XceI	RCATGY	3 cut(s)	199, 518, 672
XspI	CTAG	1 cut(s)	230
Zsp2I	ATGCAT	3 cut(s)	6, 108, 197

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.