Rh6DG504400

Conserved oligomeric Golgi complex subunit

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6D
OG0007656
Physical Location & Seq
Reverse (-)
65930659 .. 65934873
4215 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6DG504400.1

Sequence Viewer

Length: 1293 bp
ATGCACCCCAAGTTGCCCGTTATACAAGCTCTGGCTGCAGAAGTCAGGCAGACCACCCAATCTCTTCTTTCTCAGCTTCTTCAGAAACTTCGCTCAAACATTCAGTTACCTGAGTGTCTCCGCATTATTGGATATCTACGTAGAATAGGGGTATTTAGTGAGTATGAAATGCGTCTGCAGTTCCTGAGATGTCGGCAAGCATGGCTTACTGGAATTCTTGAGGATTTGGACAAGAGGAACGCGTATGAGTACCTGAAGGGGATGATTAACTTCCAAAGACAGCATCTATTTGATGTTGTCAATCAATACAGAGCAATATTTTCTGATGATACATCAGGCAATGAAGAAAATCATGATGGCGGTCTTCTGTTCAGTTGGTCTATGCATCAAATTACCTCACTCCTTAAGACTCTGAAGATTATGCTTCCAAAAATAACTGAAGGCGGATCACTGTCGAACATTTTGGAACAATCCATGTATTGTGCTATGGGGCTTGGTTGGGTTGGGCTAGATTTCCGGGGACTGCTACCATCACTTTTTGAAGAGGCAGTTCTCAACTTGTTTGCAAAAAATACGAGTACAGCAGTTGAAAATTTTCAGTTGGTCTTGGATTCACATCGTTGGGTCCCATTACCAGCAGTTGGTTTTCCAGCAAATAGTGTTAATGATGAAAGTCTGGATGATGTAACTCCGCCATCTTATCTTATGGAACATCCACCTCTTGCTGTTTTTGTTAATGGTGTCTCTGCAGCGATGAATGACCTCCGGCCTTGTGCCCCCATAAGTTTGAAGCACGTGCTTGCTCAAGAGTTAATCAAGGGATTACAGACTGTTGCTGACTCTTTACTTAGGTACAATACAACTAGAATACTGAGAGATAACGAGTCTGGACTTTTTCTCTCACTTTGCCGGGCTTTCATTGAGATTACTTACCCTCATTGTGCAAATTGCTTTGGCCGCTGCTACCCTGGTGGAGCTGCTTTAGTAATGGATGCAAAGAGTTTATACGATGGGATTGGCCGCCTATTGACAGTCTCTACATCCAGAGGGCTTCCCAAACCTGTTGGTGAGGAAAACAAAGATAAACCTGTTGGGGATGAGAACAAAGATGAAAGTGAAAAGAGCATAACTGAGAATGGTGACATGCCCGTGGTTGAAAACGGGGTCACACCTGTTGTTGAACAAACTAATGAGACCAGTGCAGACGAAAGGGAAGAGAACGTTGAGAAAACAGATGAAAAGGAAACGAAAAGCGCGACTTTACAAACAGAGGAAAGACCAAGCGATGTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Dor1

Protein Analysis

430

Amino Acids

48.08

Weight (kDa)

5.07

Isoelectric Point (pI)

48.43

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Dor1 PF04124 1 - 197 1.6e-74 Dor1-like family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 641
AccII CGCG 2 cut(s) 242, 1256
AciI CCGC 6 cut(s) 121, 360, 444, 692, 958, 1021
AclI AACGTT 1 cut(s) 1221
AclWI GGATC 1 cut(s) 454
AcoI YGGCCR 2 cut(s) 955, 1018
AcsI RAATTY 2 cut(s) 213, 592
AcuI CTGAAG 4 cut(s) 65, 275, 434, 459
AcvI CACGTG 1 cut(s) 796
AfaI GTAC 3 cut(s) 251, 580, 854
AfiI CCNNNNNNNGG 1 cut(s) 641
AflII CTTAAG 1 cut(s) 404
AflIII ACRYGT 1 cut(s) 240
AgsI TTSAA 5 cut(s) 542, 590, 790, 1157, 1181
AjnI CCWGG 1 cut(s) 967
AluBI AGCT 3 cut(s) 29, 76, 977
AluI AGCT 3 cut(s) 29, 76, 977
Alw26I GTCTC 4 cut(s) 122, 748, 1039, 1187
AlwI GGATC 1 cut(s) 454
AlwNI CAGNNNCTG 1 cut(s) 184
AoxI GGCC 3 cut(s) 767, 955, 1018
ApeKI GCWGC 4 cut(s) 35, 749, 960, 977
ApoI RAATTY 2 cut(s) 213, 592
Asp700I GAANNNNTTC 1 cut(s) 594
AspLEI GCGC 1 cut(s) 1256
AspS9I GGNCC 1 cut(s) 625
AsuC2I CCSGG 2 cut(s) 518, 911
AsuHPI GGTGA 2 cut(s) 1079, 1151
AvaII GGWCC 1 cut(s) 625
BaeGI GKGCMC 1 cut(s) 778
BbrPI CACGTG 1 cut(s) 796
BbsI GAAGAC 1 cut(s) 356
BbvI GCAGC 4 cut(s) 22, 761, 947, 964
BccI CCATC 4 cut(s) 350, 538, 703, 1004
BciT130I CCWGG 1 cut(s) 969
BcnI CCSGG 2 cut(s) 518, 911
BcoDI GTCTC 4 cut(s) 122, 748, 1039, 1187
BfaI CTAG 2 cut(s) 509, 864
BfmI CTRYAG 3 cut(s) 36, 176, 747
BfrI CTTAAG 1 cut(s) 404
BisI GCNGC 6 cut(s) 36, 750, 958, 961, 978, 1021
BlsI GCNGC 6 cut(s) 37, 751, 959, 962, 979, 1022
Bme1390I CCNGG 3 cut(s) 518, 911, 969
Bme18I GGWCC 1 cut(s) 625
BmgT120I GGNCC 1 cut(s) 625
BmiI GGNNCC 2 cut(s) 626, 627
BmrFI CCNGG 3 cut(s) 518, 911, 969
BmsI GCATC 3 cut(s) 292, 394, 982
BpiI GAAGAC 1 cut(s) 356
BpuEI CTTGAG 2 cut(s) 239, 789
BpuMI CCSGG 2 cut(s) 518, 911
BsaAI YACGTR 2 cut(s) 140, 796
BsaBI GATNNNNATC 1 cut(s) 615
BsaI GGTCTC 1 cut(s) 1187
BsaJI CCNNGG 3 cut(s) 517, 967, 1149
Bsc4I CCNNNNNNNGG 1 cut(s) 641
Bse1I ACTGG 2 cut(s) 214, 1197
Bse3DI GCAATG 1 cut(s) 346
Bse8I GATNNNNATC 1 cut(s) 615
BseBI CCWGG 1 cut(s) 969
BseDI CCNNGG 3 cut(s) 517, 967, 1149
BseGI GGATG 6 cut(s) 267, 685, 712, 997, 1040, 1102
BseJI GATNNNNATC 1 cut(s) 615
BseLI CCNNNNNNNGG 1 cut(s) 641
BseMI GCAATG 1 cut(s) 346
BseMII CTCAG 5 cut(s) 86, 102, 176, 863, 1122
BseNI ACTGG 2 cut(s) 214, 1197
BseSI GKGCMC 1 cut(s) 778
BseXI GCAGC 4 cut(s) 22, 761, 947, 964
BsgI GTGCAG 1 cut(s) 1221
Bsh1236I CGCG 2 cut(s) 242, 1256
BshFI GGCC 3 cut(s) 769, 957, 1020
BsiSI CCGG 3 cut(s) 517, 766, 910
BslFI GGGAC 2 cut(s) 534, 611
BslI CCNNNNNNNGG 1 cut(s) 641
BsmAI GTCTC 4 cut(s) 122, 748, 1039, 1187
BsmFI GGGAC 2 cut(s) 534, 611
BsnI GGCC 3 cut(s) 769, 957, 1020
Bso31I GGTCTC 1 cut(s) 1187
Bsp1286I GDGCHC 1 cut(s) 778
Bsp143I GATC 1 cut(s) 446
BspACI CCGC 6 cut(s) 121, 360, 444, 692, 958, 1021
BspANI GGCC 3 cut(s) 769, 957, 1020
BspCNI CTCAG 5 cut(s) 85, 103, 177, 864, 1123
BspFNI CGCG 2 cut(s) 242, 1256
BspHI TCATGA 1 cut(s) 352
BspLI GGNNCC 2 cut(s) 626, 627
BspMAI CTGCAG 3 cut(s) 40, 180, 751
BspPI GGATC 1 cut(s) 454
BspTI CTTAAG 1 cut(s) 404
BspTNI GGTCTC 1 cut(s) 1187
BsrDI GCAATG 1 cut(s) 346
BsrI ACTGG 2 cut(s) 214, 1197
BssECI CCNNGG 3 cut(s) 517, 967, 1149
BssMI GATC 1 cut(s) 446
Bst2UI CCWGG 1 cut(s) 969
Bst4CI ACNGT 3 cut(s) 453, 832, 1033
Bst6I CTCTTC 3 cut(s) 69, 537, 1209
BstAFI CTTAAG 1 cut(s) 404
BstBAI YACGTR 2 cut(s) 140, 796
BstC8I GCNNGC 2 cut(s) 198, 801
BstDEI CTNAG 6 cut(s) 72, 111, 185, 848, 872, 1131
BstDSI CCRYGG 1 cut(s) 1149
BstF5I GGATG 6 cut(s) 267, 685, 712, 997, 1040, 1102
BstFNI CGCG 2 cut(s) 242, 1256
BstHHI GCGC 1 cut(s) 1256
BstKTI GATC 1 cut(s) 449
BstMAI GTCTC 4 cut(s) 122, 748, 1039, 1187
BstMBI GATC 1 cut(s) 446
BstMWI GCNNNNNNNGC 3 cut(s) 35, 202, 957
BstNI CCWGG 1 cut(s) 969
BstNSI RCATGY 1 cut(s) 1147
BstSCI CCNGG 3 cut(s) 516, 909, 967
BstSFI CTRYAG 3 cut(s) 36, 176, 747
BstSLI GKGCMC 1 cut(s) 778
BstSNI TACGTA 1 cut(s) 140
BstUI CGCG 2 cut(s) 242, 1256
BstV1I GCAGC 4 cut(s) 22, 761, 947, 964
BstV2I GAAGAC 1 cut(s) 356
BsuRI GGCC 3 cut(s) 769, 957, 1020
BtgI CCRYGG 1 cut(s) 1149
BtgZI GCGATG 1 cut(s) 767
BtsCI GGATG 6 cut(s) 267, 685, 712, 997, 1040, 1102
BtsIMutI CAGTG 2 cut(s) 449, 1204
Cac8I GCNNGC 2 cut(s) 198, 801
CaiI CAGNNNCTG 1 cut(s) 184
CciI TCATGA 1 cut(s) 352
CfoI GCGC 1 cut(s) 1256
Cfr13I GGNCC 1 cut(s) 625
CseI GACGC 1 cut(s) 161
Csp6I GTAC 3 cut(s) 250, 579, 853
CviAII CATG 4 cut(s) 201, 353, 475, 1144
CviQI GTAC 3 cut(s) 250, 579, 853
DdeI CTNAG 6 cut(s) 72, 111, 185, 848, 872, 1131
DpnI GATC 1 cut(s) 448
DpnII GATC 1 cut(s) 446
EaeI YGGCCR 2 cut(s) 955, 1018
Eam1104I CTCTTC 3 cut(s) 69, 537, 1209
EarI CTCTTC 3 cut(s) 69, 537, 1209
EciI GGCGGA 2 cut(s) 459, 681
Eco105I TACGTA 1 cut(s) 140
Eco31I GGTCTC 1 cut(s) 1187
Eco32I GATATC 1 cut(s) 134
Eco47I GGWCC 1 cut(s) 625
Eco57I CTGAAG 4 cut(s) 65, 275, 434, 459
Eco72I CACGTG 1 cut(s) 796
EcoO109I RGGNCCY 1 cut(s) 625
EcoRI GAATTC 1 cut(s) 213
EcoRII CCWGG 1 cut(s) 967
EcoRV GATATC 1 cut(s) 134
EcoT22I ATGCAT 1 cut(s) 387
FaeI CATG 4 cut(s) 204, 356, 478, 1147
FalI AAGNNNNNCTT 4 cut(s) 189, 221, 1243, 1275
FaqI GGGAC 2 cut(s) 534, 611
FatI CATG 4 cut(s) 200, 352, 474, 1143
Fnu4HI GCNGC 6 cut(s) 36, 750, 958, 961, 978, 1021
FokI GGATG 6 cut(s) 274, 692, 699, 1004, 1027, 1109
Fsp4HI GCNGC 6 cut(s) 36, 750, 958, 961, 978, 1021
FspBI CTAG 2 cut(s) 509, 864
GlaI GCGC 1 cut(s) 1255
GluI GCNGC 6 cut(s) 36, 750, 958, 961, 978, 1021
HaeIII GGCC 3 cut(s) 769, 957, 1020
HapII CCGG 3 cut(s) 517, 766, 910
HgaI GACGC 1 cut(s) 161
HhaI GCGC 1 cut(s) 1256
Hin1II CATG 4 cut(s) 204, 356, 478, 1147
Hin6I GCGC 1 cut(s) 1254
HinP1I GCGC 1 cut(s) 1254
HinfI GANTC 4 cut(s) 409, 611, 839, 884
HpaII CCGG 3 cut(s) 517, 766, 910
HphI GGTGA 2 cut(s) 1079, 1151
Hpy188I TCNGA 3 cut(s) 84, 325, 414
Hpy188III TCNNGA 7 cut(s) 184, 218, 353, 677, 806, 888, 1044
HpyAV CCTTC 2 cut(s) 250, 434
HpyCH4III ACNGT 3 cut(s) 453, 832, 1033
HpyCH4IV ACGT 3 cut(s) 139, 795, 1221
HpyCH4V TGCA 9 cut(s) 4, 38, 178, 385, 566, 749, 944, 995, 1202
HpyF10VI GCNNNNNNNGC 3 cut(s) 35, 202, 957
HpyF3I CTNAG 6 cut(s) 72, 111, 185, 848, 872, 1131
HpySE526I ACGT 3 cut(s) 139, 795, 1221
Hsp92II CATG 4 cut(s) 204, 356, 478, 1147
HspAI GCGC 1 cut(s) 1254
KflI GGGWCCC 1 cut(s) 625
Kzo9I GATC 1 cut(s) 446
LmnI GCTCC 1 cut(s) 974
Lsp1109I GCAGC 4 cut(s) 22, 761, 947, 964
LweI GCATC 3 cut(s) 292, 394, 982
MaeI CTAG 2 cut(s) 509, 864
MaeII ACGT 3 cut(s) 139, 795, 1221
MaeIII GTNAC 4 cut(s) 105, 685, 1139, 1165
MalI GATC 1 cut(s) 448
MboI GATC 1 cut(s) 446
MboII GAAGA 7 cut(s) 56, 71, 356, 356, 427, 554, 1226
MhlI GDGCHC 1 cut(s) 778
MluCI AATT 4 cut(s) 213, 390, 592, 946
MluI ACGCGT 1 cut(s) 240
MlyI GAGTC 3 cut(s) 403, 833, 893
Mph1103I ATGCAT 1 cut(s) 387
MroXI GAANNNNTTC 1 cut(s) 594
MseI TTAA 5 cut(s) 267, 405, 663, 735, 812
MslI CAYNNNNRTG 1 cut(s) 1148
MspA1I CMGCKG 1 cut(s) 960
MspCI CTTAAG 1 cut(s) 404
MspI CCGG 3 cut(s) 517, 766, 910
MspR9I CCNGG 3 cut(s) 518, 911, 969
MvaI CCWGG 1 cut(s) 969
MvnI CGCG 2 cut(s) 242, 1256
MwoI GCNNNNNNNGC 3 cut(s) 35, 202, 957
NciI CCSGG 2 cut(s) 518, 911
NdeII GATC 1 cut(s) 446
NlaIII CATG 4 cut(s) 204, 356, 478, 1147
NlaIV GGNNCC 2 cut(s) 626, 627
NmuCI GTSAC 2 cut(s) 1139, 1165
NsiI ATGCAT 1 cut(s) 387
NspI RCATGY 1 cut(s) 1147
PagI TCATGA 1 cut(s) 352
PcsI WCGNNNNNNNCGW 1 cut(s) 1253
PdmI GAANNNNTTC 1 cut(s) 594
PfeI GAWTC 1 cut(s) 611
PflMI CCANNNNNTGG 1 cut(s) 641
PkrI GCNGC 6 cut(s) 37, 751, 959, 962, 979, 1022
PleI GAGTC 3 cut(s) 403, 833, 892
PmaCI CACGTG 1 cut(s) 796
PmlI CACGTG 1 cut(s) 796
PpsI GAGTC 3 cut(s) 403, 833, 892
Ppu21I YACGTR 2 cut(s) 140, 796
PpuMI RGGWCCY 1 cut(s) 625
Psp1406I AACGTT 1 cut(s) 1221
Psp5II RGGWCCY 1 cut(s) 625
Psp6I CCWGG 1 cut(s) 967
PspCI CACGTG 1 cut(s) 796
PspGI CCWGG 1 cut(s) 967
PspN4I GGNNCC 2 cut(s) 626, 627
PspPI GGNCC 1 cut(s) 625
PspPPI RGGWCCY 1 cut(s) 625
PstI CTGCAG 3 cut(s) 40, 180, 751
PstNI CAGNNNCTG 1 cut(s) 184
RsaI GTAC 3 cut(s) 251, 580, 854
RsaNI GTAC 3 cut(s) 250, 579, 853
RseI CAYNNNNRTG 1 cut(s) 1148
SaqAI TTAA 5 cut(s) 267, 405, 663, 735, 812
SatI GCNGC 6 cut(s) 36, 750, 958, 961, 978, 1021
Sau3AI GATC 1 cut(s) 446
Sau96I GGNCC 1 cut(s) 625
SchI GAGTC 3 cut(s) 403, 833, 893
ScrFI CCNGG 3 cut(s) 518, 911, 969
SduI GDGCHC 1 cut(s) 778
SfaNI GCATC 3 cut(s) 292, 394, 982
SfcI CTRYAG 3 cut(s) 36, 176, 747
SinI GGWCC 1 cut(s) 625
SmiMI CAYNNNNRTG 1 cut(s) 1148
SmlI CTYRAG 3 cut(s) 218, 404, 804
SmoI CTYRAG 3 cut(s) 218, 404, 804
SnaBI TACGTA 1 cut(s) 140
Sse9I AATT 4 cut(s) 213, 390, 592, 946
SsiI CCGC 6 cut(s) 121, 360, 444, 692, 958, 1021
SspI AATATT 1 cut(s) 318
SspMI CTAG 2 cut(s) 509, 864
StyD4I CCNGG 3 cut(s) 516, 909, 967
TaaI ACNGT 3 cut(s) 453, 832, 1033
TaiI ACGT 3 cut(s) 142, 798, 1224
TaqI TCGA 1 cut(s) 455
TasI AATT 4 cut(s) 213, 390, 592, 946
TatI WGTACW 1 cut(s) 578
TauI GCSGC 2 cut(s) 960, 1023
TfiI GAWTC 1 cut(s) 611
Tru1I TTAA 5 cut(s) 267, 405, 663, 735, 812
Tru9I TTAA 5 cut(s) 267, 405, 663, 735, 812
TscAI CASTG 2 cut(s) 456, 1204
TseFI GTSAC 2 cut(s) 1139, 1165
TseI GCWGC 4 cut(s) 35, 749, 960, 977
Tsp45I GTSAC 2 cut(s) 1139, 1165
TspDTI ATGAA 7 cut(s) 180, 357, 684, 770, 907, 1125, 1251
TspRI CASTG 2 cut(s) 456, 1204
Van91I CCANNNNNTGG 1 cut(s) 641
Vha464I CTTAAG 1 cut(s) 404
VpaK11BI GGWCC 1 cut(s) 625
XapI RAATTY 2 cut(s) 213, 592
XceI RCATGY 1 cut(s) 1147
XmnI GAANNNNTTC 1 cut(s) 594
XspI CTAG 2 cut(s) 509, 864
Zsp2I ATGCAT 1 cut(s) 387
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.