FvH4_2g31690

Heat shock factor protein

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
Physical Location & Seq
Reverse (-)
24245902 .. 24248455
2554 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g31690.t7

Sequence Viewer

Length: 1119 bp
ATGGAGACAGTGATAGTGAAAGAAGAAGAAACTATAACAGCCACAGTTGGTTCATCGTCTTCATCTTCTTCAAGCCTGACACCGCGACCGATGGAGGGCTTACACGATTTGGGTCCGCCACCATTTCTTTCAAAGACTTTTGAAATGGTGGAGGACCCTTCTACTGACCCCGTTGTTTCCTGGAGCAGAGCTCGCAACAGCTTCATTGTTTGGGACTCTCATCAGTTCTCATCCACTCTTCTTCCTCGGTACTTCAAGCACAATAATTTCTCGAGCTTCATTCGCCAGCTTAATACATATGGTTTCAGAAAGGTTGATCCGGATCGATGGGAGTTCGCGAATGAAGGGTTTCTTGGAGGGCAGAGGCATTTGTTGAAGACCATCAAGAGGAGGAGGCATGTGTCGCAGAATATGCATGAAGGTGGAGGAGGGGCTTGTGTTGAATTGGGACAGTATGGGCTAGAGACTGAGCTTGAAAGACTGAAGAGGGACAGAAATGTGTTGATGACTGAAATAGTGAGATTGAGGCAGCAACAACAGAATTCAAAGGAGCTGGTCATTGCAATGGAGGATCGGTTGCAGACGACTGAGAAGAAACAGCAACAGATTATGAGTTTCCTTGCAAAAGCACTCAAGAACCCATCTTTTATCCAAAACTTTGCTCAGAAAAGAGAGTTGATTGGTGTTGAAATTGGTCGAAAGCGAAGATTAGCTGCCAGCCCGAGTGTGGAGAATTTGCAAGAGATGCCTACAGCCCATGTTTTGGCCAGGTCAAGAAGTCAGGATCAGGGAGAGTTTCCAACCATGGAGTCAGACTTTGAGTCACTTTTCTCAGCTGCTGCTTTGGACAATGAATCAAGCAGTGATTTCAAGGGCTCTAATCTAACTTCAATACCCACAAGTAATGGTGGCAACTTGGGCACTGTGAATGAGACGATGTGGGAGGACTTGTGGAGTGAAGAGCTCATTGGTGGAAATCCAGAGGAAGAGGTTGTGGTGGGGAATGATTCTGAAATCGATGTGGAGGTGGAGGATCTTGTTGCTGATCCTTCAGAATGGGGTGAGGACTTGCAAGACCTTGTTGATCAAATGGATTATCTGATCAAGGCCAATCCTTAG

Protein Analysis

373

Amino Acids

41.98

Weight (kDa)

4.86

Isoelectric Point (pI)

58.63

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 763
AccII CGCG 2 cut(s) 85, 338
AccIII TCCGGA 1 cut(s) 319
AciI CCGC 2 cut(s) 83, 116
AclWI GGATC 6 cut(s) 311, 330, 579, 792, 1040, 1041
AcoI YGGCCR 1 cut(s) 765
AcsI RAATTY 2 cut(s) 541, 733
AcuI CTGAAG 2 cut(s) 503, 1035
AfaI GTAC 1 cut(s) 251
AfiI CCNNNNNNNGG 4 cut(s) 95, 387, 727, 763
AhdI GACNNNNNGTC 1 cut(s) 820
AjnI CCWGG 2 cut(s) 179, 767
AjuI GAANNNNNNNTTGG 4 cut(s) 336, 368, 951, 983
AluBI AGCT 9 cut(s) 191, 201, 276, 289, 472, 553, 713, 836, 964
AluI AGCT 9 cut(s) 191, 201, 276, 289, 472, 553, 713, 836, 964
Alw21I GWGCWC 2 cut(s) 193, 966
Alw26I GTCTC 2 cut(s) 458, 926
AlwI GGATC 6 cut(s) 311, 330, 579, 792, 1040, 1041
AlwNI CAGNNNCTG 1 cut(s) 839
Ama87I CYCGRG 2 cut(s) 271, 721
Aor13HI TCCGGA 1 cut(s) 319
AoxI GGCC 2 cut(s) 765, 1107
ApeKI GCWGC 4 cut(s) 529, 713, 836, 839
ApoI RAATTY 2 cut(s) 541, 733
Asp700I GAANNNNTTC 1 cut(s) 348
AspS9I GGNCC 2 cut(s) 113, 154
AsuHPI GGTGA 1 cut(s) 1073
AvaI CYCGRG 2 cut(s) 271, 721
AvaII GGWCC 2 cut(s) 113, 154
BaeGI GKGCMC 1 cut(s) 923
BalI TGGCCA 1 cut(s) 767
BanII GRGCYC 3 cut(s) 193, 878, 966
BbsI GAAGAC 2 cut(s) 51, 383
Bbv12I GWGCWC 2 cut(s) 193, 966
BbvI GCAGC 4 cut(s) 541, 700, 823, 826
BccI CCATC 4 cut(s) 85, 321, 389, 649
BciT130I CCWGG 2 cut(s) 181, 769
BclI TGATCA 2 cut(s) 1084, 1101
BcoDI GTCTC 2 cut(s) 458, 926
BfaI CTAG 1 cut(s) 461
BfmI CTRYAG 1 cut(s) 750
BisI GCNGC 4 cut(s) 530, 714, 837, 840
BlsI GCNGC 4 cut(s) 531, 715, 838, 841
Bme1390I CCNGG 2 cut(s) 181, 769
Bme18I GGWCC 2 cut(s) 113, 154
BmeRI GACNNNNNGTC 1 cut(s) 820
BmeT110I CYCGRG 2 cut(s) 271, 721
BmgT120I GGNCC 2 cut(s) 113, 154
BmiI GGNNCC 2 cut(s) 114, 156
BmrFI CCNGG 2 cut(s) 181, 769
BmsI GCATC 1 cut(s) 735
BpiI GAAGAC 2 cut(s) 51, 383
BplI GAGNNNNNCTC 2 cut(s) 175, 207
BpmI CTGGAG 1 cut(s) 202
BpuEI CTTGAG 1 cut(s) 617
Bsa29I ATCGAT 2 cut(s) 325, 1017
BsaBI GATNNNNATC 1 cut(s) 321
BsaJI CCNNGG 2 cut(s) 245, 804
BsaWI WCCGGW 1 cut(s) 319
BsaXI ACNNNNNCTCC 4 cut(s) 560, 590, 935, 965
Bsc4I CCNNNNNNNGG 4 cut(s) 95, 387, 727, 763
Bse3DI GCAATG 2 cut(s) 558, 570
Bse8I GATNNNNATC 1 cut(s) 321
BseAI TCCGGA 1 cut(s) 319
BseBI CCWGG 2 cut(s) 181, 769
BseCI ATCGAT 2 cut(s) 325, 1017
BseDI CCNNGG 2 cut(s) 245, 804
BseGI GGATG 1 cut(s) 230
BseJI GATNNNNATC 1 cut(s) 321
BseLI CCNNNNNNNGG 4 cut(s) 95, 387, 727, 763
BseMI GCAATG 2 cut(s) 558, 570
BseMII CTCAG 4 cut(s) 459, 579, 677, 846
BseRI GAGGAG 3 cut(s) 403, 406, 441
BseSI GKGCMC 1 cut(s) 923
BseXI GCAGC 4 cut(s) 541, 700, 823, 826
Bsh1236I CGCG 2 cut(s) 85, 338
Bsh1285I CGRYCG 1 cut(s) 89
BshFI GGCC 2 cut(s) 767, 1109
BshVI ATCGAT 2 cut(s) 325, 1017
BsiEI CGRYCG 1 cut(s) 89
BsiHKAI GWGCWC 2 cut(s) 193, 966
BsiHKCI CYCGRG 2 cut(s) 271, 721
BsiSI CCGG 1 cut(s) 320
BslFI GGGAC 3 cut(s) 227, 462, 503
BslI CCNNNNNNNGG 4 cut(s) 95, 387, 727, 763
BsmAI GTCTC 2 cut(s) 458, 926
BsmBI CGTCTC 1 cut(s) 926
BsmFI GGGAC 3 cut(s) 227, 462, 503
BsnI GGCC 2 cut(s) 767, 1109
BsoBI CYCGRG 2 cut(s) 271, 721
Bsp1286I GDGCHC 4 cut(s) 193, 878, 923, 966
Bsp13I TCCGGA 1 cut(s) 319
Bsp143I GATC 8 cut(s) 316, 322, 571, 784, 1033, 1045, 1084, 1101
Bsp19I CCATGG 1 cut(s) 804
Bsp68I TCGCGA 1 cut(s) 338
BspACI CCGC 2 cut(s) 83, 116
BspANI GGCC 2 cut(s) 767, 1109
BspCNI CTCAG 4 cut(s) 460, 580, 676, 845
BspDI ATCGAT 2 cut(s) 325, 1017
BspEI TCCGGA 1 cut(s) 319
BspFNI CGCG 2 cut(s) 85, 338
BspLI GGNNCC 2 cut(s) 114, 156
BspPI GGATC 6 cut(s) 311, 330, 579, 792, 1040, 1041
BspQI GCTCTTC 1 cut(s) 954
BsrDI GCAATG 2 cut(s) 558, 570
BssECI CCNNGG 2 cut(s) 245, 804
BssMI GATC 8 cut(s) 316, 322, 571, 784, 1033, 1045, 1084, 1101
BssT1I CCWWGG 1 cut(s) 804
Bst2UI CCWGG 2 cut(s) 181, 769
Bst4CI ACNGT 4 cut(s) 10, 46, 453, 925
Bst6I CTCTTC 4 cut(s) 243, 479, 954, 981
BstAPI GCANNNNNTGC 2 cut(s) 412, 745
BstC8I GCNNGC 3 cut(s) 193, 287, 718
BstDEI CTNAG 5 cut(s) 468, 588, 663, 832, 1116
BstDSI CCRYGG 1 cut(s) 804
BstF5I GGATG 1 cut(s) 230
BstFNI CGCG 2 cut(s) 85, 338
BstKTI GATC 8 cut(s) 319, 325, 574, 787, 1036, 1048, 1087, 1104
BstMAI GTCTC 2 cut(s) 458, 926
BstMBI GATC 8 cut(s) 316, 322, 571, 784, 1033, 1045, 1084, 1101
BstMCI CGRYCG 1 cut(s) 89
BstMWI GCNNNNNNNGC 6 cut(s) 192, 282, 403, 412, 745, 918
BstNI CCWGG 2 cut(s) 181, 769
BstNSI RCATGY 1 cut(s) 401
BstSCI CCNGG 2 cut(s) 179, 767
BstSFI CTRYAG 1 cut(s) 750
BstSLI GKGCMC 1 cut(s) 923
BstUI CGCG 2 cut(s) 85, 338
BstV1I GCAGC 4 cut(s) 541, 700, 823, 826
BstV2I GAAGAC 2 cut(s) 51, 383
BstX2I RGATCY 1 cut(s) 1033
BstYI RGATCY 1 cut(s) 1033
Bsu15I ATCGAT 2 cut(s) 325, 1017
BsuRI GGCC 2 cut(s) 767, 1109
BsuTUI ATCGAT 2 cut(s) 325, 1017
BtgI CCRYGG 1 cut(s) 804
BtsCI GGATG 1 cut(s) 230
BtsI GCAGTG 1 cut(s) 868
BtsIMutI CAGTG 3 cut(s) 15, 868, 921
BtuMI TCGCGA 1 cut(s) 338
Cac8I GCNNGC 3 cut(s) 193, 287, 718
CaiI CAGNNNCTG 1 cut(s) 839
Cfr13I GGNCC 2 cut(s) 113, 154
ClaI ATCGAT 2 cut(s) 325, 1017
Csp6I GTAC 1 cut(s) 250
CviAII CATG 4 cut(s) 398, 416, 758, 805
CviQI GTAC 1 cut(s) 250
DdeI CTNAG 5 cut(s) 468, 588, 663, 832, 1116
DpnI GATC 8 cut(s) 318, 324, 573, 786, 1035, 1047, 1086, 1103
DpnII GATC 8 cut(s) 316, 322, 571, 784, 1033, 1045, 1084, 1101
DriI GACNNNNNGTC 1 cut(s) 820
EaeI YGGCCR 1 cut(s) 765
Eam1104I CTCTTC 4 cut(s) 243, 479, 954, 981
Eam1105I GACNNNNNGTC 1 cut(s) 820
EarI CTCTTC 4 cut(s) 243, 479, 954, 981
EciI GGCGGA 1 cut(s) 105
Ecl136II GAGCTC 2 cut(s) 191, 964
Eco130I CCWWGG 1 cut(s) 804
Eco24I GRGCYC 3 cut(s) 193, 878, 966
Eco47I GGWCC 2 cut(s) 113, 154
Eco53kI GAGCTC 2 cut(s) 191, 964
Eco57I CTGAAG 2 cut(s) 503, 1035
Eco88I CYCGRG 2 cut(s) 271, 721
EcoICRI GAGCTC 2 cut(s) 191, 964
EcoO109I RGGNCCY 1 cut(s) 154
EcoRI GAATTC 1 cut(s) 541
EcoRII CCWGG 2 cut(s) 179, 767
EcoT14I CCWWGG 1 cut(s) 804
EcoT22I ATGCAT 1 cut(s) 417
EcoT38I GRGCYC 3 cut(s) 193, 878, 966
ErhI CCWWGG 1 cut(s) 804
Esp3I CGTCTC 1 cut(s) 926
FaeI CATG 4 cut(s) 401, 419, 761, 808
FalI AAGNNNNNCTT 2 cut(s) 336, 368
FaqI GGGAC 3 cut(s) 227, 462, 503
FatI CATG 4 cut(s) 397, 415, 757, 804
FauNDI CATATG 1 cut(s) 298
FbaI TGATCA 2 cut(s) 1084, 1101
Fnu4HI GCNGC 4 cut(s) 530, 714, 837, 840
FokI GGATG 1 cut(s) 217
FriOI GRGCYC 3 cut(s) 193, 878, 966
Fsp4HI GCNGC 4 cut(s) 530, 714, 837, 840
FspBI CTAG 1 cut(s) 461
GluI GCNGC 4 cut(s) 530, 714, 837, 840
GsuI CTGGAG 1 cut(s) 202
HaeIII GGCC 2 cut(s) 767, 1109
HapII CCGG 1 cut(s) 320
Hin1II CATG 4 cut(s) 401, 419, 761, 808
HinfI GANTC 5 cut(s) 215, 809, 821, 854, 1007
HpaII CCGG 1 cut(s) 320
HphI GGTGA 1 cut(s) 1073
Hpy188I TCNGA 6 cut(s) 308, 666, 814, 1012, 1054, 1101
Hpy188III TCNNGA 8 cut(s) 271, 320, 337, 385, 634, 774, 782, 980
HpyAV CCTTC 4 cut(s) 168, 338, 413, 1059
HpyCH4III ACNGT 4 cut(s) 10, 46, 453, 925
HpyCH4V TGCA 6 cut(s) 415, 563, 580, 623, 739, 1072
HpyF10VI GCNNNNNNNGC 6 cut(s) 192, 282, 403, 412, 745, 918
HpyF3I CTNAG 5 cut(s) 468, 588, 663, 832, 1116
Hsp92II CATG 4 cut(s) 401, 419, 761, 808
Kpn2I TCCGGA 1 cut(s) 319
Ksp22I TGATCA 2 cut(s) 1084, 1101
Kzo9I GATC 8 cut(s) 316, 322, 571, 784, 1033, 1045, 1084, 1101
LguI GCTCTTC 1 cut(s) 954
LmnI GCTCC 2 cut(s) 183, 550
Lsp1109I GCAGC 4 cut(s) 541, 700, 823, 826
LweI GCATC 1 cut(s) 735
MaeI CTAG 1 cut(s) 461
MaeIII GTNAC 1 cut(s) 822
MalI GATC 8 cut(s) 318, 324, 573, 786, 1035, 1047, 1086, 1103
MboI GATC 8 cut(s) 316, 322, 571, 784, 1033, 1045, 1084, 1101
MflI RGATCY 1 cut(s) 1033
MhlI GDGCHC 4 cut(s) 193, 878, 923, 966
MlsI TGGCCA 1 cut(s) 767
MluCI AATT 5 cut(s) 265, 443, 541, 690, 733
MluNI TGGCCA 1 cut(s) 767
MlyI GAGTC 3 cut(s) 209, 818, 830
MmeI TCCRAC 1 cut(s) 824
Mox20I TGGCCA 1 cut(s) 767
Mph1103I ATGCAT 1 cut(s) 417
MroI TCCGGA 1 cut(s) 319
MroXI GAANNNNTTC 1 cut(s) 348
MscI TGGCCA 1 cut(s) 767
MseI TTAA 1 cut(s) 291
MslI CAYNNNNRTG 2 cut(s) 420, 563
Msp20I TGGCCA 1 cut(s) 767
MspA1I CMGCKG 1 cut(s) 836
MspI CCGG 1 cut(s) 320
MspR9I CCNGG 2 cut(s) 181, 769
MvaI CCWGG 2 cut(s) 181, 769
MvnI CGCG 2 cut(s) 85, 338
MwoI GCNNNNNNNGC 6 cut(s) 192, 282, 403, 412, 745, 918
NcoI CCATGG 1 cut(s) 804
NdeI CATATG 1 cut(s) 298
NdeII GATC 8 cut(s) 316, 322, 571, 784, 1033, 1045, 1084, 1101
NlaIII CATG 4 cut(s) 401, 419, 761, 808
NlaIV GGNNCC 2 cut(s) 114, 156
NmuCI GTSAC 1 cut(s) 822
NruI TCGCGA 1 cut(s) 338
NsiI ATGCAT 1 cut(s) 417
NspI RCATGY 1 cut(s) 401
PaeR7I CTCGAG 1 cut(s) 271
PciSI GCTCTTC 1 cut(s) 954
PdmI GAANNNNTTC 1 cut(s) 348
PfeI GAWTC 2 cut(s) 854, 1007
PflMI CCANNNNNTGG 1 cut(s) 763
PfoI TCCNGGA 1 cut(s) 179
PkrI GCNGC 4 cut(s) 531, 715, 838, 841
PleI GAGTC 3 cut(s) 209, 817, 829
PpsI GAGTC 3 cut(s) 209, 817, 829
PpuMI RGGWCCY 1 cut(s) 154
Psp124BI GAGCTC 2 cut(s) 193, 966
Psp5II RGGWCCY 1 cut(s) 154
Psp6I CCWGG 2 cut(s) 179, 767
PspGI CCWGG 2 cut(s) 179, 767
PspN4I GGNNCC 2 cut(s) 114, 156
PspPI GGNCC 2 cut(s) 113, 154
PspPPI RGGWCCY 1 cut(s) 154
PstNI CAGNNNCTG 1 cut(s) 839
PsuI RGATCY 1 cut(s) 1033
PvuII CAGCTG 1 cut(s) 836
RruI TCGCGA 1 cut(s) 338
RsaI GTAC 1 cut(s) 251
RsaNI GTAC 1 cut(s) 250
RseI CAYNNNNRTG 2 cut(s) 420, 563
SacI GAGCTC 2 cut(s) 193, 966
SapI GCTCTTC 1 cut(s) 954
SaqAI TTAA 1 cut(s) 291
SatI GCNGC 4 cut(s) 530, 714, 837, 840
Sau3AI GATC 8 cut(s) 316, 322, 571, 784, 1033, 1045, 1084, 1101
Sau96I GGNCC 2 cut(s) 113, 154
SchI GAGTC 3 cut(s) 209, 818, 830
ScrFI CCNGG 2 cut(s) 181, 769
SduI GDGCHC 4 cut(s) 193, 878, 923, 966
SfaNI GCATC 1 cut(s) 735
SfcI CTRYAG 1 cut(s) 750
Sfr274I CTCGAG 1 cut(s) 271
SinI GGWCC 2 cut(s) 113, 154
SlaI CTCGAG 1 cut(s) 271
SmiMI CAYNNNNRTG 2 cut(s) 420, 563
SmlI CTYRAG 2 cut(s) 271, 632
SmoI CTYRAG 2 cut(s) 271, 632
Sse9I AATT 5 cut(s) 265, 443, 541, 690, 733
SsiI CCGC 2 cut(s) 83, 116
SspMI CTAG 1 cut(s) 461
SstI GAGCTC 2 cut(s) 193, 966
StyD4I CCNGG 2 cut(s) 179, 767
StyI CCWWGG 1 cut(s) 804
TaaI ACNGT 4 cut(s) 10, 46, 453, 925
TaqI TCGA 4 cut(s) 272, 325, 697, 1017
TaqII GACCGA 1 cut(s) 103
TasI AATT 5 cut(s) 265, 443, 541, 690, 733
TfiI GAWTC 2 cut(s) 854, 1007
Tru1I TTAA 1 cut(s) 291
Tru9I TTAA 1 cut(s) 291
TscAI CASTG 3 cut(s) 15, 868, 928
TseFI GTSAC 1 cut(s) 822
TseI GCWGC 4 cut(s) 529, 713, 836, 839
Tsp45I GTSAC 1 cut(s) 822
TspDTI ATGAA 7 cut(s) 42, 51, 193, 268, 357, 432, 867
TspRI CASTG 3 cut(s) 15, 868, 928
Van91I CCANNNNNTGG 1 cut(s) 763
VpaK11BI GGWCC 2 cut(s) 113, 154
XapI RAATTY 2 cut(s) 541, 733
XceI RCATGY 1 cut(s) 401
XcmI CCANNNNNNNNNTGG 1 cut(s) 724
XhoI CTCGAG 1 cut(s) 271
XmnI GAANNNNTTC 1 cut(s) 348
XspI CTAG 1 cut(s) 461
Zsp2I ATGCAT 1 cut(s) 417
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.