Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr15

Orthogroup ID

OG0003357

Physical Location & Seq

Genomic Coordinates Reverse (-)

3235028 .. 3235654

Gene Structure 627 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom15g05430.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 627 bp

ATGACGGAGATTGTGAAGTTGAGGCAGCAACAACAAAATTCAAGGGAGCAAGTCATGGCAATGGAGGGCCGGTTGCTGACCACGGAGAAAAAACAGCAGCAGATGATGACTTTCCTTGCTAAAGCACTCAATAATCCATCTTTTCTCCAAAACCTTGCTGAGAAGAATGCCAAGAATAGGGCACTGCACGGTATTGGTAGAAAGCGGAGACTGGCTGCTAGTCCCAGTCTGGAGAGTCTGCAAGAAGCGCCTAGAATCGACGTTGTGGACTACTCTGCAAGCCAGGATCAGGGAGAGTTGGCAACTATGGAACCAGATATTGAGAACTTTTTCTCAACTGCTGCATTGGACAATGAATCAAGCAGTGGTTTCAAAGACCCCAAACCGAGCTTAGTAACCACAAGTACTGGTGGAGGCAACTTGGATTCTGTTGATGAGACCATATGGGAGGAGCTGTGGAGTGATGACCTCATTGGTGGCAACCCGGAGGAGGAAGCTGCTGCGGTGGGCGAGGAATCAGAAGTCGACGTTGAGGTGGAGGATTTGGTTGCAGAGCCTGCAGATTGGGGTGAGGACTTGCAAGACCTTGTTGATCAAATGGGTTATCTAATCCGGCCCAAGCCGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000302 GO:0001067 GO:0001666 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006950 GO:0006979 GO:0006986 GO:0008150 GO:0009266 GO:0009314 GO:0009408 GO:0009416 GO:0009628 GO:0009636 GO:0009642 GO:0009644 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010033 GO:0010035 GO:0010200 GO:0010243 GO:0010286 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0033554 GO:0034605 GO:0034620 GO:0035966 GO:0035967 GO:0036293 GO:0036294 GO:0042221 GO:0042493 GO:0042542 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044212 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0046677 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0051716 GO:0060255 GO:0065007 GO:0070482 GO:0070887 GO:0071310 GO:0071453 GO:0071456 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1901698 GO:1901700 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HSF_DNA-bind

Protein Analysis

209

Amino Acids

23.01

Weight (kDa)

4.3

Isoelectric Point (pI)

52.96

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003357)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G26150 AT2G26150 AT2G26150 AT2G26150
fragaria_vesca	FvH4_2g31690 FvH4_2g31690 FvH4_2g31690 FvH4_2g31690 FvH4_2g31690 FvH4_2g31690 FvH4_2g31690
malus_domestica	MD08G1064100.v1.1 MD15G1057700.v1.1
prunus_persica	Prupe.1G410400_v2.0.a1 Prupe.1G410400_v2.0.a1 Prupe.1G410400_v2.0.a1 Prupe.1G410400_v2.0.a1 Prupe.1G410400_v2.0.a1 Prupe.1G410400_v2.0.a1 Prupe.1G410400_v2.0.a1 Prupe.1G410400_v2.0.a1
pyrus_communis	pycom08g05260 pycom15g05430
rosa_chinensis	RchiOBHm_Chr6g0311151
rosa_laevigata	RLG00000010432
rosa_multiflora	Rmu_sc0008967.1_g000010
rosa_roxburghii	Rroxscaffold_7G00157980
rosa_rugosa	Rorug06G0385800 Rorug06G0385900 Rorug06G0385900
rosa_samantha	Rh2CG294900 Rh6AG499900 Rh6BG510600 Rh6CG516300 Rh6DG502800
rosa_wichuraiana	Rw6G043540

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	525
AciI	CCGC	2 cut(s)	205, 503
AclWI	GGATC	1 cut(s)	294
AcsI	RAATTY	1 cut(s)	37
AfaI	GTAC	1 cut(s)	406
AfiI	CCNNNNNNNGG	3 cut(s)	177, 289, 490
AgsI	TTSAA	2 cut(s)	42, 373
AjnI	CCWGG	1 cut(s)	282
AluBI	AGCT	3 cut(s)	390, 454, 497
AluI	AGCT	3 cut(s)	390, 454, 497
Alw26I	GTCTC	2 cut(s)	202, 431
AlwI	GGATC	1 cut(s)	294
AlwNI	CAGNNNCTG	1 cut(s)	557
AoxI	GGCC	2 cut(s)	67, 614
ApeKI	GCWGC	6 cut(s)	25, 97, 215, 341, 497, 500
ApoI	RAATTY	1 cut(s)	37
Asp700I	GAANNNNTTC	1 cut(s)	329
AspLEI	GCGC	1 cut(s)	250
AspS9I	GGNCC	2 cut(s)	67, 615
AsuC2I	CCSGG	1 cut(s)	485
AsuHPI	GGTGA	1 cut(s)	581
BaeGI	GKGCMC	1 cut(s)	184
BbvI	GCAGC	6 cut(s)	37, 109, 202, 328, 484, 487
BccI	CCATC	1 cut(s)	145
BceAI	ACGGC	1 cut(s)	607
BciT130I	CCWGG	1 cut(s)	284
BclI	TGATCA	1 cut(s)	592
BcnI	CCSGG	1 cut(s)	485
BcoDI	GTCTC	2 cut(s)	202, 431
BfaI	CTAG	2 cut(s)	219, 252
BfmI	CTRYAG	1 cut(s)	558
BfoI	RGCGCY	1 cut(s)	251
BisI	GCNGC	6 cut(s)	26, 98, 216, 342, 498, 501
BlsI	GCNGC	6 cut(s)	27, 99, 217, 343, 499, 502
BmcAI	AGTACT	1 cut(s)	406
Bme1390I	CCNGG	2 cut(s)	284, 485
BmgT120I	GGNCC	2 cut(s)	67, 615
BmiI	GGNNCC	1 cut(s)	312
BmrFI	CCNGG	2 cut(s)	284, 485
BmrI	ACTGGG	1 cut(s)	219
BmuI	ACTGGG	1 cut(s)	219
BpmI	CTGGAG	1 cut(s)	251
BpuMI	CCSGG	1 cut(s)	485
BsaI	GGTCTC	1 cut(s)	431
BsaJI	CCNNGG	1 cut(s)	81
BsaXI	ACNNNNNCTCC	4 cut(s)	56, 86, 440, 470
Bsc4I	CCNNNNNNNGG	3 cut(s)	177, 289, 490
Bse118I	RCCGGY	1 cut(s)	69
Bse1I	ACTGG	3 cut(s)	216, 225, 412
Bse3DI	GCAATG	1 cut(s)	66
BseBI	CCWGG	1 cut(s)	284
BseDI	CCNNGG	1 cut(s)	81
BseLI	CCNNNNNNNGG	3 cut(s)	177, 289, 490
BseMI	GCAATG	1 cut(s)	66
BseMII	CTCAG	1 cut(s)	150
BseNI	ACTGG	3 cut(s)	216, 225, 412
BseRI	GAGGAG	2 cut(s)	464, 503
BseSI	GKGCMC	1 cut(s)	184
BseXI	GCAGC	6 cut(s)	37, 109, 202, 328, 484, 487
BsgI	GTGCAG	1 cut(s)	170
BshFI	GGCC	2 cut(s)	69, 616
BsiSI	CCGG	3 cut(s)	70, 485, 613
BslFI	GGGAC	1 cut(s)	207
BslI	CCNNNNNNNGG	3 cut(s)	177, 289, 490
BsmAI	GTCTC	2 cut(s)	202, 431
BsmFI	GGGAC	1 cut(s)	207
BsmI	GAATGC	1 cut(s)	172
BsnI	GGCC	2 cut(s)	69, 616
Bso31I	GGTCTC	1 cut(s)	431
Bsp1286I	GDGCHC	1 cut(s)	184
Bsp143I	GATC	2 cut(s)	286, 592
BspACI	CCGC	2 cut(s)	205, 503
BspANI	GGCC	2 cut(s)	69, 616
BspCNI	CTCAG	1 cut(s)	151
BspLI	GGNNCC	1 cut(s)	312
BspMAI	CTGCAG	1 cut(s)	562
BspPI	GGATC	1 cut(s)	294
BspTNI	GGTCTC	1 cut(s)	431
BsrDI	GCAATG	1 cut(s)	66
BsrFI	RCCGGY	1 cut(s)	69
BsrI	ACTGG	3 cut(s)	216, 225, 412
BssAI	RCCGGY	1 cut(s)	69
BssECI	CCNNGG	1 cut(s)	81
BssMI	GATC	2 cut(s)	286, 592
Bst2UI	CCWGG	1 cut(s)	284
Bst4CI	ACNGT	1 cut(s)	191
BstAPI	GCANNNNNTGC	1 cut(s)	557
BstC8I	GCNNGC	2 cut(s)	280, 558
BstDEI	CTNAG	2 cut(s)	159, 391
BstDSI	CCRYGG	1 cut(s)	81
BstH2I	RGCGCY	1 cut(s)	251
BstHHI	GCGC	1 cut(s)	250
BstKTI	GATC	2 cut(s)	289, 595
BstMAI	GTCTC	2 cut(s)	202, 431
BstMBI	GATC	2 cut(s)	286, 592
BstMWI	GCNNNNNNNGC	2 cut(s)	247, 557
BstNI	CCWGG	1 cut(s)	284
BstSCI	CCNGG	2 cut(s)	282, 483
BstSFI	CTRYAG	1 cut(s)	558
BstSLI	GKGCMC	1 cut(s)	184
BstV1I	GCAGC	6 cut(s)	37, 109, 202, 328, 484, 487
BsuRI	GGCC	2 cut(s)	69, 616
BtgI	CCRYGG	1 cut(s)	81
BtsI	GCAGTG	2 cut(s)	182, 370
BtsIMutI	CAGTG	2 cut(s)	182, 370
Cac8I	GCNNGC	2 cut(s)	280, 558
CaiI	CAGNNNCTG	1 cut(s)	557
CfoI	GCGC	1 cut(s)	250
Cfr10I	RCCGGY	1 cut(s)	69
Cfr13I	GGNCC	2 cut(s)	67, 615
Csp6I	GTAC	1 cut(s)	405
CviAII	CATG	1 cut(s)	55
CviJI	RGCY	9 cut(s)	69, 215, 282, 390, 454, 497, 556, 616, 622
CviKI_1	RGCY	9 cut(s)	69, 215, 282, 390, 454, 497, 556, 616, 622
CviQI	GTAC	1 cut(s)	405
DdeI	CTNAG	2 cut(s)	159, 391
DpnI	GATC	2 cut(s)	288, 594
DpnII	GATC	2 cut(s)	286, 592
Eco31I	GGTCTC	1 cut(s)	431
EcoRII	CCWGG	1 cut(s)	282
FaeI	CATG	1 cut(s)	58
FaiI	YATR	4 cut(s)	56, 308, 443, 445
FaqI	GGGAC	1 cut(s)	207
FatI	CATG	1 cut(s)	54
FauNDI	CATATG	1 cut(s)	443
FbaI	TGATCA	1 cut(s)	592
FblI	GTMKAC	1 cut(s)	525
Fnu4HI	GCNGC	6 cut(s)	26, 98, 216, 342, 498, 501
Fsp4HI	GCNGC	6 cut(s)	26, 98, 216, 342, 498, 501
FspBI	CTAG	2 cut(s)	219, 252
GlaI	GCGC	1 cut(s)	249
GluI	GCNGC	6 cut(s)	26, 98, 216, 342, 498, 501
GsuI	CTGGAG	1 cut(s)	251
HaeII	RGCGCY	1 cut(s)	251
HaeIII	GGCC	2 cut(s)	69, 616
HapII	CCGG	3 cut(s)	70, 485, 613
HhaI	GCGC	1 cut(s)	250
Hin1II	CATG	1 cut(s)	58
Hin6I	GCGC	1 cut(s)	248
HinP1I	GCGC	1 cut(s)	248
HincII	GTYRAC	1 cut(s)	526
HindII	GTYRAC	1 cut(s)	526
HinfI	GANTC	5 cut(s)	235, 255, 356, 425, 515
HpaII	CCGG	3 cut(s)	70, 485, 613
HphI	GGTGA	1 cut(s)	581
Hpy166II	GTNNAC	2 cut(s)	268, 526
Hpy188I	TCNGA	1 cut(s)	520
Hpy188III	TCNNGA	1 cut(s)	230
Hpy8I	GTNNAC	2 cut(s)	268, 526
Hpy99I	CGWCG	2 cut(s)	263, 530
HpyCH4III	ACNGT	1 cut(s)	191
HpyCH4IV	ACGT	2 cut(s)	261, 528
HpyCH4V	TGCA	7 cut(s)	187, 241, 278, 344, 551, 560, 580
HpyF10VI	GCNNNNNNNGC	2 cut(s)	247, 557
HpyF3I	CTNAG	2 cut(s)	159, 391
HpySE526I	ACGT	2 cut(s)	261, 528
Hsp92II	CATG	1 cut(s)	58
HspAI	GCGC	1 cut(s)	248
Ksp22I	TGATCA	1 cut(s)	592
Kzo9I	GATC	2 cut(s)	286, 592
LmnI	GCTCC	2 cut(s)	46, 451
Lsp1109I	GCAGC	6 cut(s)	37, 109, 202, 328, 484, 487
MaeI	CTAG	2 cut(s)	219, 252
MaeII	ACGT	2 cut(s)	261, 528
MaeIII	GTNAC	1 cut(s)	394
MalI	GATC	2 cut(s)	288, 594
MboI	GATC	2 cut(s)	286, 592
MboII	GAAGA	1 cut(s)	175
MhlI	GDGCHC	1 cut(s)	184
MluCI	AATT	1 cut(s)	37
MlyI	GAGTC	1 cut(s)	244
MroXI	GAANNNNTTC	1 cut(s)	329
MslI	CAYNNNNRTG	1 cut(s)	59
MspI	CCGG	3 cut(s)	70, 485, 613
MspR9I	CCNGG	2 cut(s)	284, 485
Mva1269I	GAATGC	1 cut(s)	172
MvaI	CCWGG	1 cut(s)	284
MwoI	GCNNNNNNNGC	2 cut(s)	247, 557
NciI	CCSGG	1 cut(s)	485
NdeI	CATATG	1 cut(s)	443
NdeII	GATC	2 cut(s)	286, 592
NlaIII	CATG	1 cut(s)	58
NlaIV	GGNNCC	1 cut(s)	312
PctI	GAATGC	1 cut(s)	172
PdmI	GAANNNNTTC	1 cut(s)	329
PfeI	GAWTC	4 cut(s)	255, 356, 425, 515
PkrI	GCNGC	6 cut(s)	27, 99, 217, 343, 499, 502
PleI	GAGTC	1 cut(s)	243
PpsI	GAGTC	1 cut(s)	243
Psp6I	CCWGG	1 cut(s)	282
PspGI	CCWGG	1 cut(s)	282
PspN4I	GGNNCC	1 cut(s)	312
PspPI	GGNCC	2 cut(s)	67, 615
PstI	CTGCAG	1 cut(s)	562
PstNI	CAGNNNCTG	1 cut(s)	557
RsaI	GTAC	1 cut(s)	406
RsaNI	GTAC	1 cut(s)	405
RseI	CAYNNNNRTG	1 cut(s)	59
SalI	GTCGAC	1 cut(s)	524
SatI	GCNGC	6 cut(s)	26, 98, 216, 342, 498, 501
Sau3AI	GATC	2 cut(s)	286, 592
Sau96I	GGNCC	2 cut(s)	67, 615
ScaI	AGTACT	1 cut(s)	406
SchI	GAGTC	1 cut(s)	244
ScrFI	CCNGG	2 cut(s)	284, 485
SduI	GDGCHC	1 cut(s)	184
SetI	ASST	9 cut(s)	156, 264, 392, 456, 471, 499, 531, 537, 588
SfcI	CTRYAG	1 cut(s)	558
SmiMI	CAYNNNNRTG	1 cut(s)	59
Sse9I	AATT	1 cut(s)	37
SsiI	CCGC	2 cut(s)	205, 503
SspMI	CTAG	2 cut(s)	219, 252
StyD4I	CCNGG	2 cut(s)	282, 483
TaaI	ACNGT	1 cut(s)	191
TaiI	ACGT	2 cut(s)	264, 531
TaqI	TCGA	2 cut(s)	258, 525
TasI	AATT	1 cut(s)	37
TatI	WGTACW	1 cut(s)	404
TfiI	GAWTC	4 cut(s)	255, 356, 425, 515
TscAI	CASTG	2 cut(s)	189, 370
TseI	GCWGC	6 cut(s)	25, 97, 215, 341, 497, 500
TspDTI	ATGAA	1 cut(s)	369
TspGWI	ACGGA	2 cut(s)	20, 98
TspRI	CASTG	2 cut(s)	189, 370
XapI	RAATTY	1 cut(s)	37
XmiI	GTMKAC	1 cut(s)	525
XmnI	GAANNNNTTC	1 cut(s)	329
XspI	CTAG	2 cut(s)	219, 252
ZrmI	AGTACT	1 cut(s)	406

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.