Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2C

Orthogroup ID

OG0003357

Physical Location & Seq

Genomic Coordinates Forward (+)

33852862 .. 33853367

Gene Structure 506 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2CG294900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 432 bp

ATGGGACGCCCTCTCAAGCTGACCCCAATCTCGAGCTTTGAGACGTTCTTTGATCCTTGTTGTACTTTCAGGTCCTTGTGTGTTGGAGATATAAAGCGAGTGCACCGGAAAAGAACGGGAACTGGAGACTTTCAGTCACTTTTCTCAGCTGCTGCTTTGGACAATGAATCAAGCAGTGATATCAACGGCTCTAATCTGACTTCAATACCCACAAGTGGTGGCGGCAAGTTGGGCACTGTGAATGAGACAATTTGGGACCACCTGTGGAGTGATGAGCTCATTGGTGGAAATCCAGAGGAAGAGGTTGTAGTTGGGAATGACTCTGAAATCGATGTGGAGGTGGAGGATCTGGTTGCTGATCCTTCAGAATGGGGTGAGGACTTGCAAGACCTTGTTGATCAAATGGATTTTCTGATCAAGTCCAATCCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000302 GO:0001067 GO:0001666 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006950 GO:0006979 GO:0006986 GO:0008150 GO:0009266 GO:0009314 GO:0009408 GO:0009416 GO:0009628 GO:0009636 GO:0009642 GO:0009644 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010033 GO:0010035 GO:0010200 GO:0010243 GO:0010286 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0033554 GO:0034605 GO:0034620 GO:0035966 GO:0035967 GO:0036293 GO:0036294 GO:0042221 GO:0042493 GO:0042542 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044212 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0046677 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0051716 GO:0060255 GO:0065007 GO:0070482 GO:0070887 GO:0071310 GO:0071453 GO:0071456 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1901698 GO:1901700 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HSF_DNA-bind

Protein Analysis

143

Amino Acids

15.62

Weight (kDa)

4.14

Isoelectric Point (pI)

39.29

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003357)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G26150 AT2G26150 AT2G26150 AT2G26150
fragaria_vesca	FvH4_2g31690 FvH4_2g31690 FvH4_2g31690 FvH4_2g31690 FvH4_2g31690 FvH4_2g31690 FvH4_2g31690
malus_domestica	MD08G1064100.v1.1 MD15G1057700.v1.1
prunus_persica	Prupe.1G410400_v2.0.a1 Prupe.1G410400_v2.0.a1 Prupe.1G410400_v2.0.a1 Prupe.1G410400_v2.0.a1 Prupe.1G410400_v2.0.a1 Prupe.1G410400_v2.0.a1 Prupe.1G410400_v2.0.a1 Prupe.1G410400_v2.0.a1
pyrus_communis	pycom08g05260 pycom15g05430
rosa_chinensis	RchiOBHm_Chr6g0311151
rosa_laevigata	RLG00000010432
rosa_multiflora	Rmu_sc0008967.1_g000010
rosa_roxburghii	Rroxscaffold_7G00157980
rosa_rugosa	Rorug06G0385800 Rorug06G0385900 Rorug06G0385900
rosa_samantha	Rh2CG294900 Rh6AG499900 Rh6BG510600 Rh6CG516300 Rh6DG502800
rosa_wichuraiana	Rw6G043540

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	222
AclWI	GGATC	3 cut(s)	47, 353, 354
AcuI	CTGAAG	1 cut(s)	348
AcyI	GRCGYC	1 cut(s)	7
AfaI	GTAC	1 cut(s)	64
AfiI	CCNNNNNNNGG	1 cut(s)	215
AgsI	TTSAA	1 cut(s)	204
AhdI	GACNNNNNGTC	1 cut(s)	133
AluBI	AGCT	4 cut(s)	19, 36, 149, 277
AluI	AGCT	4 cut(s)	19, 36, 149, 277
Alw21I	GWGCWC	2 cut(s)	105, 279
Alw26I	GTCTC	3 cut(s)	35, 120, 239
Alw44I	GTGCAC	1 cut(s)	101
AlwI	GGATC	3 cut(s)	47, 353, 354
AlwNI	CAGNNNCTG	1 cut(s)	152
Ama87I	CYCGRG	1 cut(s)	31
ApaLI	GTGCAC	1 cut(s)	101
ApeKI	GCWGC	2 cut(s)	149, 152
AspS9I	GGNCC	2 cut(s)	72, 256
AsuHPI	GGTGA	1 cut(s)	386
AvaI	CYCGRG	1 cut(s)	31
AvaII	GGWCC	2 cut(s)	72, 256
BaeGI	GKGCMC	2 cut(s)	105, 236
BanII	GRGCYC	1 cut(s)	279
Bbv12I	GWGCWC	2 cut(s)	105, 279
BbvI	GCAGC	2 cut(s)	136, 139
BceAI	ACGGC	1 cut(s)	202
BclI	TGATCA	2 cut(s)	397, 414
BcoDI	GTCTC	3 cut(s)	35, 120, 239
BisI	GCNGC	3 cut(s)	150, 153, 223
BlsI	GCNGC	3 cut(s)	151, 154, 224
Bme18I	GGWCC	2 cut(s)	72, 256
BmeRI	GACNNNNNGTC	1 cut(s)	133
BmeT110I	CYCGRG	1 cut(s)	31
BmgT120I	GGNCC	2 cut(s)	72, 256
BmiI	GGNNCC	1 cut(s)	257
BpmI	CTGGAG	1 cut(s)	144
Bsa29I	ATCGAT	1 cut(s)	330
BsaHI	GRCGYC	1 cut(s)	7
BsaWI	WCCGGW	1 cut(s)	105
Bsc4I	CCNNNNNNNGG	1 cut(s)	215
Bse1I	ACTGG	1 cut(s)	127
BseCI	ATCGAT	1 cut(s)	330
BseLI	CCNNNNNNNGG	1 cut(s)	215
BseMII	CTCAG	1 cut(s)	159
BseNI	ACTGG	1 cut(s)	127
BseSI	GKGCMC	2 cut(s)	105, 236
BseXI	GCAGC	2 cut(s)	136, 139
BshVI	ATCGAT	1 cut(s)	330
BsiHKAI	GWGCWC	2 cut(s)	105, 279
BsiHKCI	CYCGRG	1 cut(s)	31
BsiSI	CCGG	1 cut(s)	106
BslFI	GGGAC	2 cut(s)	18, 269
BslI	CCNNNNNNNGG	1 cut(s)	215
BsmAI	GTCTC	3 cut(s)	35, 120, 239
BsmBI	CGTCTC	1 cut(s)	35
BsmFI	GGGAC	2 cut(s)	18, 269
BsoBI	CYCGRG	1 cut(s)	31
Bsp1286I	GDGCHC	3 cut(s)	105, 236, 279
Bsp143I	GATC	5 cut(s)	52, 346, 358, 397, 414
BspACI	CCGC	1 cut(s)	222
BspCNI	CTCAG	1 cut(s)	158
BspDI	ATCGAT	1 cut(s)	330
BspLI	GGNNCC	1 cut(s)	257
BspPI	GGATC	3 cut(s)	47, 353, 354
BsrI	ACTGG	1 cut(s)	127
BssMI	GATC	5 cut(s)	52, 346, 358, 397, 414
BssNI	GRCGYC	1 cut(s)	7
Bst4CI	ACNGT	1 cut(s)	238
Bst6I	CTCTTC	1 cut(s)	294
BstACI	GRCGYC	1 cut(s)	7
BstDEI	CTNAG	1 cut(s)	145
BstKTI	GATC	5 cut(s)	55, 349, 361, 400, 417
BstMAI	GTCTC	3 cut(s)	35, 120, 239
BstMBI	GATC	5 cut(s)	52, 346, 358, 397, 414
BstMWI	GCNNNNNNNGC	1 cut(s)	231
BstSLI	GKGCMC	2 cut(s)	105, 236
BstV1I	GCAGC	2 cut(s)	136, 139
BstX2I	RGATCY	1 cut(s)	346
BstYI	RGATCY	1 cut(s)	346
Bsu15I	ATCGAT	1 cut(s)	330
BsuTUI	ATCGAT	1 cut(s)	330
BtsI	GCAGTG	1 cut(s)	181
BtsIMutI	CAGTG	2 cut(s)	181, 234
CaiI	CAGNNNCTG	1 cut(s)	152
Cfr13I	GGNCC	2 cut(s)	72, 256
ClaI	ATCGAT	1 cut(s)	330
CseI	GACGC	1 cut(s)	15
Csp6I	GTAC	1 cut(s)	63
CviJI	RGCY	5 cut(s)	19, 36, 149, 189, 277
CviKI_1	RGCY	5 cut(s)	19, 36, 149, 189, 277
CviQI	GTAC	1 cut(s)	63
DdeI	CTNAG	1 cut(s)	145
DpnI	GATC	5 cut(s)	54, 348, 360, 399, 416
DpnII	GATC	5 cut(s)	52, 346, 358, 397, 414
DriI	GACNNNNNGTC	1 cut(s)	133
Eam1104I	CTCTTC	1 cut(s)	294
Eam1105I	GACNNNNNGTC	1 cut(s)	133
EarI	CTCTTC	1 cut(s)	294
Ecl136II	GAGCTC	1 cut(s)	277
Eco24I	GRGCYC	1 cut(s)	279
Eco32I	GATATC	1 cut(s)	181
Eco47I	GGWCC	2 cut(s)	72, 256
Eco53kI	GAGCTC	1 cut(s)	277
Eco57I	CTGAAG	1 cut(s)	348
Eco88I	CYCGRG	1 cut(s)	31
EcoICRI	GAGCTC	1 cut(s)	277
EcoO109I	RGGNCCY	1 cut(s)	72
EcoRV	GATATC	1 cut(s)	181
EcoT38I	GRGCYC	1 cut(s)	279
Esp3I	CGTCTC	1 cut(s)	35
FaiI	YATR	1 cut(s)	92
FaqI	GGGAC	2 cut(s)	18, 269
FbaI	TGATCA	2 cut(s)	397, 414
Fnu4HI	GCNGC	3 cut(s)	150, 153, 223
FriOI	GRGCYC	1 cut(s)	279
Fsp4HI	GCNGC	3 cut(s)	150, 153, 223
GluI	GCNGC	3 cut(s)	150, 153, 223
GsuI	CTGGAG	1 cut(s)	144
HapII	CCGG	1 cut(s)	106
HgaI	GACGC	1 cut(s)	15
Hin1I	GRCGYC	1 cut(s)	7
HinfI	GANTC	2 cut(s)	167, 320
HpaII	CCGG	1 cut(s)	106
HphI	GGTGA	1 cut(s)	386
Hpy166II	GTNNAC	1 cut(s)	103
Hpy188I	TCNGA	4 cut(s)	198, 325, 367, 414
Hpy188III	TCNNGA	2 cut(s)	31, 293
Hpy8I	GTNNAC	1 cut(s)	103
HpyAV	CCTTC	1 cut(s)	372
HpyCH4III	ACNGT	1 cut(s)	238
HpyCH4IV	ACGT	1 cut(s)	44
HpyCH4V	TGCA	2 cut(s)	103, 385
HpyF10VI	GCNNNNNNNGC	1 cut(s)	231
HpyF3I	CTNAG	1 cut(s)	145
HpySE526I	ACGT	1 cut(s)	44
Hsp92I	GRCGYC	1 cut(s)	7
Ksp22I	TGATCA	2 cut(s)	397, 414
Kzo9I	GATC	5 cut(s)	52, 346, 358, 397, 414
LpnPI	CCDG	6 cut(s)	55, 108, 119, 275, 306, 335
Lsp1109I	GCAGC	2 cut(s)	136, 139
MaeII	ACGT	1 cut(s)	44
MaeIII	GTNAC	1 cut(s)	135
MalI	GATC	5 cut(s)	54, 348, 360, 399, 416
MboI	GATC	5 cut(s)	52, 346, 358, 397, 414
MboII	GAAGA	1 cut(s)	311
MflI	RGATCY	1 cut(s)	346
MhlI	GDGCHC	3 cut(s)	105, 236, 279
MluCI	AATT	1 cut(s)	249
MlyI	GAGTC	1 cut(s)	314
MmeI	TCCRAC	1 cut(s)	64
MnlI	CCTC	6 cut(s)	21, 289, 295, 331, 337, 370
MspA1I	CMGCKG	1 cut(s)	149
MspI	CCGG	1 cut(s)	106
MwoI	GCNNNNNNNGC	1 cut(s)	231
NdeII	GATC	5 cut(s)	52, 346, 358, 397, 414
NlaIV	GGNNCC	1 cut(s)	257
NmuCI	GTSAC	1 cut(s)	135
PaeR7I	CTCGAG	1 cut(s)	31
PfeI	GAWTC	1 cut(s)	167
PkrI	GCNGC	3 cut(s)	151, 154, 224
PleI	GAGTC	1 cut(s)	314
PpsI	GAGTC	1 cut(s)	314
PpuMI	RGGWCCY	1 cut(s)	72
Psp124BI	GAGCTC	1 cut(s)	279
Psp5II	RGGWCCY	1 cut(s)	72
PspN4I	GGNNCC	1 cut(s)	257
PspPI	GGNCC	2 cut(s)	72, 256
PspPPI	RGGWCCY	1 cut(s)	72
PstNI	CAGNNNCTG	1 cut(s)	152
PsuI	RGATCY	1 cut(s)	346
PvuII	CAGCTG	1 cut(s)	149
RsaI	GTAC	1 cut(s)	64
RsaNI	GTAC	1 cut(s)	63
SacI	GAGCTC	1 cut(s)	279
SatI	GCNGC	3 cut(s)	150, 153, 223
Sau3AI	GATC	5 cut(s)	52, 346, 358, 397, 414
Sau96I	GGNCC	2 cut(s)	72, 256
SchI	GAGTC	1 cut(s)	314
SduI	GDGCHC	3 cut(s)	105, 236, 279
Sfr274I	CTCGAG	1 cut(s)	31
SinI	GGWCC	2 cut(s)	72, 256
SlaI	CTCGAG	1 cut(s)	31
SmlI	CTYRAG	2 cut(s)	14, 31
SmoI	CTYRAG	2 cut(s)	14, 31
Sse9I	AATT	1 cut(s)	249
SsiI	CCGC	1 cut(s)	222
SstI	GAGCTC	1 cut(s)	279
TaaI	ACNGT	1 cut(s)	238
TaiI	ACGT	1 cut(s)	47
TaqI	TCGA	2 cut(s)	32, 330
TasI	AATT	1 cut(s)	249
TatI	WGTACW	1 cut(s)	62
TauI	GCSGC	1 cut(s)	225
TfiI	GAWTC	1 cut(s)	167
TscAI	CASTG	2 cut(s)	181, 241
TseFI	GTSAC	1 cut(s)	135
TseI	GCWGC	2 cut(s)	149, 152
Tsp45I	GTSAC	1 cut(s)	135
TspDTI	ATGAA	1 cut(s)	180
TspRI	CASTG	2 cut(s)	181, 241
VneI	GTGCAC	1 cut(s)	101
VpaK11BI	GGWCC	2 cut(s)	72, 256
XhoI	CTCGAG	1 cut(s)	31

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.