MD08G1064100.v1.1

Heat shock factor protein

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr08
Physical Location & Seq
Forward (+)
5108373 .. 5110267
1895 bp
Loading structure...
UTR
Exon/CDS
Intron
MD08G1064100.v1.1.491

Sequence Viewer

Length: 1116 bp
ATGGATGGAGTGGTGGTGAAAGAGGAGGAGATTGTGACATGCACCGTCGGCTCATCGCCGCGGCCAGTAGAGGGGCTGCACGAGGTGGGTCCGCCGCCGTTTCTCACTAAGACGTTTGAAATGGTGGAGGATCCTTCCACGGACGCCATTGTTTCCTGGACCAGAGCTCGCAACAGCTTCGTTGTGTGGGACTCTCAGAAGTTCTCCACCACTCTCCTTACTCGCTACTTCAAGCACAGTAACTTCTCCAGCTTCATTCGTCAGCTCAATACTTACGGTTTCAGAAAGGTTGATTCGGACCGATGGGAATTCGCCAACGAAGGGTTTCTAGGAGGGCAGAGGCATTTGCTGAAGACCATCAAGAGGAGGAGACATGTCTCACAGAGTATGCAACAAGAAGGTGGAGGAGGAGCTTGTGTTGAATTGGGGCAGTGCGGAGTAGAAACCGAGCTTGAAAGACTGAAAAGAGACCGAAACGTTTTGATGACGGAGATTGTGAAGTTGAGGCAGCAGCAACATAATTCAAGGGAGCAAGTCATGGCAATGAAGGGCCGGTTGCTGGCCACGGAGAAAAAACAGCAGCAGATGACCACATTCCTTGCCAAAGCACTCAATAGTCCATCTTTTCTCCAGCACCTTGTTGAGAAGAATGCTAAGAACAGAAAGTTGCACGGTATTGAAATTGGTCGAAAACGCAGACTGGCTGCTAGTCCCGGTCTTGAGAATCTGCAAGAAGCGCCTATAATCGACGTCGAAGACTACTCAGCGAACCAGGATCTGGGAGAGTTGGCAAATATGGAGCCAGATATTGAGAACTTTCTCTCAACTGCTGCATTGGACAACAAATTGAGCAGTGGTATCAAGGACCCTAATCCGAGTTTAGTACCCACAAGTACTACTGGAGGCCACTTGGATTCTGTTTGTGAGACTATATGGGAGGAGCTGTGGAGTGATGACCTCATTGGTGGCAACCCGGAGGAGGAAGTTGTCGTGGTGGGCGACGAATCAGAAATCGAAGTTGAGGTGGATGATTTGGTTGCAGAGCCGGCTGATTGGGGTAAGGACTTGCAAGACCTTCTTGATCAAATGGGTTATCAGACCCAACCCAAGCCGTGA

Protein Analysis

372

Amino Acids

41.67

Weight (kDa)

5.02

Isoelectric Point (pI)

56.24

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
HSF_DNA-bind PF00447 34 - 123 8.3e-29 HSF-type DNA-binding
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 753
AccB7I CCANNNNNTGG 1 cut(s) 778
AccII CGCG 1 cut(s) 61
AciI CCGC 5 cut(s) 59, 61, 92, 95, 435
AclI AACGTT 1 cut(s) 477
AclWI GGATC 3 cut(s) 125, 138, 783
AcoI YGGCCR 2 cut(s) 62, 561
AcsI RAATTY 1 cut(s) 308
AcuI CTGAAG 1 cut(s) 371
AcyI GRCGYC 2 cut(s) 144, 750
AdeI CACNNNGTG 1 cut(s) 85
AfaI GTAC 2 cut(s) 885, 895
AfiI CCNNNNNNNGG 6 cut(s) 71, 321, 363, 559, 778, 979
AflIII ACRYGT 1 cut(s) 373
AgsI TTSAA 6 cut(s) 119, 232, 422, 455, 525, 680
AjnI CCWGG 2 cut(s) 155, 771
AluBI AGCT 7 cut(s) 167, 177, 252, 265, 413, 451, 943
AluI AGCT 7 cut(s) 167, 177, 252, 265, 413, 451, 943
Alw21I GWGCWC 1 cut(s) 169
Alw26I GTCTC 4 cut(s) 364, 382, 462, 920
AlwI GGATC 3 cut(s) 125, 138, 783
AlwNI CAGNNNCTG 1 cut(s) 778
AoxI GGCC 4 cut(s) 62, 550, 561, 904
ApeKI GCWGC 6 cut(s) 76, 508, 511, 580, 704, 830
ApoI RAATTY 1 cut(s) 308
Asp700I GAANNNNTTC 1 cut(s) 324
AspLEI GCGC 1 cut(s) 739
AspS9I GGNCC 5 cut(s) 89, 159, 298, 550, 865
AsuC2I CCSGG 2 cut(s) 714, 974
AsuHPI GGTGA 1 cut(s) 28
AvaII GGWCC 4 cut(s) 89, 159, 298, 865
BalI TGGCCA 1 cut(s) 563
BamHI GGATCC 1 cut(s) 130
BanII GRGCYC 1 cut(s) 169
BauI CACGAG 1 cut(s) 80
BbsI GAAGAC 2 cut(s) 359, 762
Bbv12I GWGCWC 1 cut(s) 169
BbvI GCAGC 6 cut(s) 63, 520, 523, 592, 691, 817
BccI CCATC 3 cut(s) 297, 365, 628
BceAI ACGGC 2 cut(s) 82, 1096
BcgI CGANNNNNNTGC 2 cut(s) 160, 194
BciT130I CCWGG 2 cut(s) 157, 773
BclI TGATCA 1 cut(s) 1081
BcnI CCSGG 2 cut(s) 714, 974
BcoDI GTCTC 4 cut(s) 364, 382, 462, 920
BfaI CTAG 2 cut(s) 329, 708
BfoI RGCGCY 1 cut(s) 740
BisI GCNGC 9 cut(s) 59, 62, 77, 95, 509, 512, 581, 705, 831
BlsI GCNGC 9 cut(s) 60, 63, 78, 96, 510, 513, 582, 706, 832
BmcAI AGTACT 1 cut(s) 895
Bme1390I CCNGG 4 cut(s) 157, 714, 773, 974
Bme18I GGWCC 4 cut(s) 89, 159, 298, 865
BmgT120I GGNCC 5 cut(s) 89, 159, 298, 550, 865
BmiI GGNNCC 4 cut(s) 90, 132, 801, 867
BmrFI CCNGG 4 cut(s) 157, 714, 773, 974
BpiI GAAGAC 2 cut(s) 359, 762
BpmI CTGGAG 3 cut(s) 232, 614, 921
BpuEI CTTGAG 1 cut(s) 740
BpuMI CCSGG 2 cut(s) 714, 974
BsaHI GRCGYC 2 cut(s) 144, 750
BsaI GGTCTC 1 cut(s) 462
BsaJI CCNNGG 3 cut(s) 59, 138, 564
BsaXI ACNNNNNCTCC 5 cut(s) 30, 402, 432, 929, 959
Bsc4I CCNNNNNNNGG 6 cut(s) 71, 321, 363, 559, 778, 979
Bse118I RCCGGY 2 cut(s) 552, 1045
Bse1I ACTGG 3 cut(s) 65, 705, 904
Bse3DI GCAATG 1 cut(s) 549
BseBI CCWGG 2 cut(s) 157, 773
BseDI CCNNGG 3 cut(s) 59, 138, 564
BseGI GGATG 2 cut(s) 10, 1033
BseLI CCNNNNNNNGG 6 cut(s) 71, 321, 363, 559, 778, 979
BseMI GCAATG 1 cut(s) 549
BseMII CTCAG 2 cut(s) 209, 777
BseNI ACTGG 3 cut(s) 65, 705, 904
BseRI GAGGAG 8 cut(s) 38, 41, 379, 382, 420, 423, 953, 992
BseXI GCAGC 6 cut(s) 63, 520, 523, 592, 691, 817
BsgI GTGCAG 1 cut(s) 62
Bsh1236I CGCG 1 cut(s) 61
BshFI GGCC 4 cut(s) 64, 552, 563, 906
BsiHKAI GWGCWC 1 cut(s) 169
BsiSI CCGG 4 cut(s) 553, 714, 974, 1046
BslFI GGGAC 2 cut(s) 203, 696
BslI CCNNNNNNNGG 6 cut(s) 71, 321, 363, 559, 778, 979
BsmAI GTCTC 4 cut(s) 364, 382, 462, 920
BsmFI GGGAC 2 cut(s) 203, 696
BsmI GAATGC 1 cut(s) 655
BsnI GGCC 4 cut(s) 64, 552, 563, 906
Bso31I GGTCTC 1 cut(s) 462
Bsp1286I GDGCHC 1 cut(s) 169
Bsp143I GATC 3 cut(s) 130, 775, 1081
BspACI CCGC 5 cut(s) 59, 61, 92, 95, 435
BspANI GGCC 4 cut(s) 64, 552, 563, 906
BspCNI CTCAG 2 cut(s) 208, 776
BspFNI CGCG 1 cut(s) 61
BspLI GGNNCC 4 cut(s) 90, 132, 801, 867
BspPI GGATC 3 cut(s) 125, 138, 783
BspTNI GGTCTC 1 cut(s) 462
BsrDI GCAATG 1 cut(s) 549
BsrFI RCCGGY 2 cut(s) 552, 1045
BsrI ACTGG 3 cut(s) 65, 705, 904
BssAI RCCGGY 2 cut(s) 552, 1045
BssECI CCNNGG 3 cut(s) 59, 138, 564
BssMI GATC 3 cut(s) 130, 775, 1081
BssNI GRCGYC 2 cut(s) 144, 750
BssSI CACGAG 1 cut(s) 80
Bst2BI CACGAG 1 cut(s) 80
Bst2UI CCWGG 2 cut(s) 157, 773
Bst4CI ACNGT 4 cut(s) 46, 239, 278, 674
BstACI GRCGYC 2 cut(s) 144, 750
BstC8I GCNNGC 3 cut(s) 169, 561, 1047
BstDEI CTNAG 4 cut(s) 108, 195, 654, 763
BstDSI CCRYGG 3 cut(s) 59, 138, 564
BstF5I GGATG 2 cut(s) 10, 1033
BstFNI CGCG 1 cut(s) 61
BstH2I RGCGCY 1 cut(s) 740
BstHHI GCGC 1 cut(s) 739
BstKTI GATC 3 cut(s) 133, 778, 1084
BstMAI GTCTC 4 cut(s) 364, 382, 462, 920
BstMBI GATC 3 cut(s) 130, 775, 1081
BstMWI GCNNNNNNNGC 3 cut(s) 48, 736, 1046
BstNI CCWGG 2 cut(s) 157, 773
BstNSI RCATGY 2 cut(s) 42, 377
BstSCI CCNGG 4 cut(s) 155, 712, 771, 972
BstUI CGCG 1 cut(s) 61
BstV1I GCAGC 6 cut(s) 63, 520, 523, 592, 691, 817
BstV2I GAAGAC 2 cut(s) 359, 762
BstX2I RGATCY 2 cut(s) 130, 775
BstYI RGATCY 2 cut(s) 130, 775
BsuRI GGCC 4 cut(s) 64, 552, 563, 906
BtgI CCRYGG 3 cut(s) 59, 138, 564
BtgZI GCGATG 1 cut(s) 39
BtsCI GGATG 2 cut(s) 10, 1033
BtsI GCAGTG 2 cut(s) 437, 859
BtsIMutI CAGTG 2 cut(s) 437, 859
Cac8I GCNNGC 3 cut(s) 169, 561, 1047
CaiI CAGNNNCTG 1 cut(s) 778
CfoI GCGC 1 cut(s) 739
Cfr10I RCCGGY 2 cut(s) 552, 1045
Cfr13I GGNCC 5 cut(s) 89, 159, 298, 550, 865
Cfr42I CCGCGG 1 cut(s) 62
CpoI CGGWCCG 1 cut(s) 298
CseI GACGC 1 cut(s) 152
Csp6I GTAC 2 cut(s) 884, 894
CspCI CAANNNNNGTGG 2 cut(s) 580, 615
CspI CGGWCCG 1 cut(s) 298
CviAII CATG 3 cut(s) 39, 374, 538
CviQI GTAC 2 cut(s) 884, 894
DdeI CTNAG 4 cut(s) 108, 195, 654, 763
DpnI GATC 3 cut(s) 132, 777, 1083
DpnII GATC 3 cut(s) 130, 775, 1081
DraIII CACNNNGTG 1 cut(s) 85
EaeI YGGCCR 2 cut(s) 62, 561
EciI GGCGGA 1 cut(s) 81
Ecl136II GAGCTC 1 cut(s) 167
Eco24I GRGCYC 1 cut(s) 169
Eco31I GGTCTC 1 cut(s) 462
Eco47I GGWCC 4 cut(s) 89, 159, 298, 865
Eco53kI GAGCTC 1 cut(s) 167
Eco57I CTGAAG 1 cut(s) 371
EcoICRI GAGCTC 1 cut(s) 167
EcoO109I RGGNCCY 1 cut(s) 865
EcoRI GAATTC 1 cut(s) 308
EcoRII CCWGG 2 cut(s) 155, 771
EcoT38I GRGCYC 1 cut(s) 169
FaeI CATG 3 cut(s) 42, 377, 541
FaiI YATR 9 cut(s) 40, 375, 389, 519, 539, 743, 797, 932, 934
FalI AAGNNNNNCTT 2 cut(s) 1062, 1094
FaqI GGGAC 2 cut(s) 203, 696
FatI CATG 3 cut(s) 38, 373, 537
FbaI TGATCA 1 cut(s) 1081
Fnu4HI GCNGC 9 cut(s) 59, 62, 77, 95, 509, 512, 581, 705, 831
FokI GGATG 2 cut(s) 17, 1040
FriOI GRGCYC 1 cut(s) 169
Fsp4HI GCNGC 9 cut(s) 59, 62, 77, 95, 509, 512, 581, 705, 831
FspBI CTAG 2 cut(s) 329, 708
GlaI GCGC 1 cut(s) 738
GluI GCNGC 9 cut(s) 59, 62, 77, 95, 509, 512, 581, 705, 831
GsuI CTGGAG 3 cut(s) 232, 614, 921
HaeII RGCGCY 1 cut(s) 740
HaeIII GGCC 4 cut(s) 64, 552, 563, 906
HapII CCGG 4 cut(s) 553, 714, 974, 1046
HgaI GACGC 1 cut(s) 152
HhaI GCGC 1 cut(s) 739
Hin1I GRCGYC 2 cut(s) 144, 750
Hin1II CATG 3 cut(s) 42, 377, 541
Hin6I GCGC 1 cut(s) 737
HinP1I GCGC 1 cut(s) 737
HinfI GANTC 5 cut(s) 191, 293, 724, 914, 1004
HpaII CCGG 4 cut(s) 553, 714, 974, 1046
HphI GGTGA 1 cut(s) 28
Hpy188I TCNGA 6 cut(s) 198, 284, 298, 876, 1009, 1098
Hpy188III TCNNGA 3 cut(s) 361, 719, 1079
Hpy99I CGWCG 4 cut(s) 50, 752, 755, 1004
HpyAV CCTTC 5 cut(s) 144, 314, 392, 541, 1085
HpyCH4III ACNGT 4 cut(s) 46, 239, 278, 674
HpyCH4IV ACGT 3 cut(s) 113, 477, 750
HpyCH4V TGCA 8 cut(s) 42, 79, 391, 670, 730, 833, 1040, 1069
HpyF10VI GCNNNNNNNGC 3 cut(s) 48, 736, 1046
HpyF3I CTNAG 4 cut(s) 108, 195, 654, 763
HpySE526I ACGT 3 cut(s) 113, 477, 750
Hsp92I GRCGYC 2 cut(s) 144, 750
Hsp92II CATG 3 cut(s) 42, 377, 541
HspAI GCGC 1 cut(s) 737
KroI GCCGGC 1 cut(s) 1045
KroNI GCCGGC 1 cut(s) 1047
Ksp22I TGATCA 1 cut(s) 1081
KspI CCGCGG 1 cut(s) 62
Kzo9I GATC 3 cut(s) 130, 775, 1081
LmnI GCTCC 4 cut(s) 410, 529, 799, 940
Lsp1109I GCAGC 6 cut(s) 63, 520, 523, 592, 691, 817
MaeI CTAG 2 cut(s) 329, 708
MaeII ACGT 3 cut(s) 113, 477, 750
MaeIII GTNAC 2 cut(s) 34, 239
MalI GATC 3 cut(s) 132, 777, 1083
MboI GATC 3 cut(s) 130, 775, 1081
MboII GAAGA 3 cut(s) 364, 658, 767
MflI RGATCY 2 cut(s) 130, 775
MhlI GDGCHC 1 cut(s) 169
MlsI TGGCCA 1 cut(s) 563
MluCI AATT 5 cut(s) 308, 422, 520, 681, 845
MluNI TGGCCA 1 cut(s) 563
MlyI GAGTC 1 cut(s) 185
Mox20I TGGCCA 1 cut(s) 563
MroNI GCCGGC 1 cut(s) 1045
MroXI GAANNNNTTC 1 cut(s) 324
MscI TGGCCA 1 cut(s) 563
MslI CAYNNNNRTG 1 cut(s) 542
Msp20I TGGCCA 1 cut(s) 563
MspA1I CMGCKG 1 cut(s) 61
MspI CCGG 4 cut(s) 553, 714, 974, 1046
MspR9I CCNGG 4 cut(s) 157, 714, 773, 974
Mva1269I GAATGC 1 cut(s) 655
MvaI CCWGG 2 cut(s) 157, 773
MvnI CGCG 1 cut(s) 61
MwoI GCNNNNNNNGC 3 cut(s) 48, 736, 1046
NaeI GCCGGC 1 cut(s) 1047
NciI CCSGG 2 cut(s) 714, 974
NdeII GATC 3 cut(s) 130, 775, 1081
NgoMIV GCCGGC 1 cut(s) 1045
NlaIII CATG 3 cut(s) 42, 377, 541
NlaIV GGNNCC 4 cut(s) 90, 132, 801, 867
NmuCI GTSAC 1 cut(s) 34
NspI RCATGY 2 cut(s) 42, 377
PciI ACATGT 1 cut(s) 373
PcsI WCGNNNNNNNCGW 1 cut(s) 996
PctI GAATGC 1 cut(s) 655
PdiI GCCGGC 1 cut(s) 1047
PdmI GAANNNNTTC 1 cut(s) 324
PfeI GAWTC 4 cut(s) 293, 724, 914, 1004
PflMI CCANNNNNTGG 1 cut(s) 778
PfoI TCCNGGA 1 cut(s) 155
PkrI GCNGC 9 cut(s) 60, 63, 78, 96, 510, 513, 582, 706, 832
PleI GAGTC 1 cut(s) 185
PpsI GAGTC 1 cut(s) 185
PpuMI RGGWCCY 1 cut(s) 865
PscI ACATGT 1 cut(s) 373
Psp124BI GAGCTC 1 cut(s) 169
Psp1406I AACGTT 1 cut(s) 477
Psp5II RGGWCCY 1 cut(s) 865
Psp6I CCWGG 2 cut(s) 155, 771
PspGI CCWGG 2 cut(s) 155, 771
PspN4I GGNNCC 4 cut(s) 90, 132, 801, 867
PspPI GGNCC 5 cut(s) 89, 159, 298, 550, 865
PspPPI RGGWCCY 1 cut(s) 865
PstNI CAGNNNCTG 1 cut(s) 778
PsuI RGATCY 2 cut(s) 130, 775
RsaI GTAC 2 cut(s) 885, 895
RsaNI GTAC 2 cut(s) 884, 894
RseI CAYNNNNRTG 1 cut(s) 542
Rsr2I CGGWCCG 1 cut(s) 298
RsrII CGGWCCG 1 cut(s) 298
SacI GAGCTC 1 cut(s) 169
SacII CCGCGG 1 cut(s) 62
SatI GCNGC 9 cut(s) 59, 62, 77, 95, 509, 512, 581, 705, 831
Sau3AI GATC 3 cut(s) 130, 775, 1081
Sau96I GGNCC 5 cut(s) 89, 159, 298, 550, 865
ScaI AGTACT 1 cut(s) 895
SchI GAGTC 1 cut(s) 185
ScrFI CCNGG 4 cut(s) 157, 714, 773, 974
SduI GDGCHC 1 cut(s) 169
Sfr303I CCGCGG 1 cut(s) 62
SgrBI CCGCGG 1 cut(s) 62
SinI GGWCC 4 cut(s) 89, 159, 298, 865
SmiMI CAYNNNNRTG 1 cut(s) 542
SmlI CTYRAG 1 cut(s) 719
SmoI CTYRAG 1 cut(s) 719
Sse9I AATT 5 cut(s) 308, 422, 520, 681, 845
SsiI CCGC 5 cut(s) 59, 61, 92, 95, 435
SspMI CTAG 2 cut(s) 329, 708
SstI GAGCTC 1 cut(s) 169
StyD4I CCNGG 4 cut(s) 155, 712, 771, 972
TaaI ACNGT 4 cut(s) 46, 239, 278, 674
TaiI ACGT 3 cut(s) 116, 480, 753
TaqI TCGA 4 cut(s) 688, 747, 753, 1014
TaqII GACCGA 2 cut(s) 315, 486
TasI AATT 5 cut(s) 308, 422, 520, 681, 845
TatI WGTACW 1 cut(s) 893
TauI GCSGC 3 cut(s) 61, 64, 97
TfiI GAWTC 4 cut(s) 293, 724, 914, 1004
TscAI CASTG 2 cut(s) 437, 859
TseFI GTSAC 1 cut(s) 34
TseI GCWGC 6 cut(s) 76, 508, 511, 580, 704, 830
Tsp45I GTSAC 1 cut(s) 34
TspDTI ATGAA 2 cut(s) 244, 560
TspGWI ACGGA 3 cut(s) 155, 503, 581
TspRI CASTG 2 cut(s) 437, 859
Van91I CCANNNNNTGG 1 cut(s) 778
VpaK11BI GGWCC 4 cut(s) 89, 159, 298, 865
XapI RAATTY 1 cut(s) 308
XceI RCATGY 2 cut(s) 42, 377
XmnI GAANNNNTTC 1 cut(s) 324
XspI CTAG 2 cut(s) 329, 708
ZraI GACGTC 1 cut(s) 751
ZrmI AGTACT 1 cut(s) 895
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.