MD15G1057700.v1.1

Heat shock factor protein

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr15
Physical Location & Seq
Reverse (-)
3865294 .. 3867564
2271 bp
Loading structure...
UTR
Exon/CDS
Intron
MD15G1057700.v1.1.491

Sequence Viewer

Length: 1134 bp
ATGGATGGAGTGTTGGTGAAAGAGGAGGAGGTTGTGACATGCACCGTCGGCTCATCGTCTTCGTCGTCCTCAAGCTTCTCGCCGCAGCCAATAGAGGGGCTGCACGAGGTGGGTCCGCCGCCGTTTCTCACGAAGACGTTTGAAATGGTGGAGGATCCTTCCACGGACGCCATTGTTTCCTGGAGCAAAGCTCGCAACAGCTTCGTTGTGTGGGACTATCACAAGTTCTCCGCCACTCTTCTTCCTCGATACTTCAAGCACAGTAACTTCTCCAGCTTCATTCGTCAGCTCAATACATATGGTTTCAGAAAGGTTGATCCGGACCGATGGGAATTCGCAAACGAGGGTTTTCTAGGAGGGCAGAGGCATTTGCTGAAGACCATTAAGAGGAGGAGACATGTCTCGCAGAATATGCAACAAGAAGCCGGAGGAGGAGCTTGTGTTGAATTGGGGCAGTATGGAGTAGAAACCGAGCTTGAAAGACTGAAAAGAGACCGAAACATTTTGATGACGGAGATTGTGAAGTTGAGGCAGCAACAACAAAATTCAAGGGAGCAAGTCATGGCAATGGAGGGCCGGTTGCTGACCACGGAGAAAAAACAGCAGCAGATGATGACTTTCCTTGCTAAAGCACTCAATAATCCATCTTTTCTACAAACCCTTGCTGAGAAGAATGCCAAGAATAGAGCACTGCACGGTATTGGTAGAAAGCGGAGACTGGCTGCTAGTCCCAGTCTTGAGAATCTGCAAGAAGCGCCTAGAATCGACGTTGTGGACTACTCTGCAAGCCAGGATCTGGGAGAGTTGGCAACTATGGAACCAGATATTGAGAACTTTTTCTCAACTGCTGCATTGGACAACAAATCGACCAGTGGTTTCAAAGACCGTAAACCGAGCTTAGTACCCGCAAGTACTGGTGGAGGCAACTTGGATTCTGTTGATGAGACCATATGGGAGGAGCTGTGGAGTGATGACCTCATTGGTGGCAACCCGGAGGAGGAAGCTGCTGCGGTGGGCGAGGAATCAGAAGTCGACGTTGAGGTGGAGGATTTGGTTGCAGAGCCTGCAGATTGGGGTGAGGACTTGCAAGACCTTGTTGATCAAATGGGTTATCTAATCCGGCCCAAGCCGTGA

Protein Analysis

378

Amino Acids

42.23

Weight (kDa)

4.9

Isoelectric Point (pI)

56.48

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
HSF_DNA-bind PF00447 42 - 131 2.9e-29 HSF-type DNA-binding
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 796
AccI GTMKAC 1 cut(s) 1032
AccIII TCCGGA 1 cut(s) 319
AciI CCGC 7 cut(s) 83, 116, 119, 231, 712, 906, 1010
AclWI GGATC 4 cut(s) 149, 162, 311, 801
AcsI RAATTY 2 cut(s) 332, 544
AcuI CTGAAG 1 cut(s) 395
AcyI GRCGYC 1 cut(s) 168
AdeI CACNNNGTG 1 cut(s) 109
AfaI GTAC 2 cut(s) 903, 913
AfiI CCNNNNNNNGG 4 cut(s) 95, 387, 796, 997
AflIII ACRYGT 1 cut(s) 397
AgsI TTSAA 6 cut(s) 143, 256, 446, 479, 549, 880
AjnI CCWGG 2 cut(s) 179, 789
Alw21I GWGCWC 1 cut(s) 691
Alw26I GTCTC 5 cut(s) 388, 406, 486, 709, 938
AlwI GGATC 4 cut(s) 149, 162, 311, 801
AlwNI CAGNNNCTG 2 cut(s) 796, 1064
Aor13HI TCCGGA 1 cut(s) 319
AoxI GGCC 2 cut(s) 574, 1121
ApeKI GCWGC 8 cut(s) 85, 100, 532, 604, 722, 848, 1004, 1007
ApoI RAATTY 2 cut(s) 332, 544
Asp700I GAANNNNTTC 1 cut(s) 836
AspLEI GCGC 1 cut(s) 757
AspS9I GGNCC 4 cut(s) 113, 322, 574, 1122
AsuC2I CCSGG 1 cut(s) 992
AsuHPI GGTGA 2 cut(s) 28, 1088
AvaII GGWCC 2 cut(s) 113, 322
BamHI GGATCC 1 cut(s) 154
BauI CACGAG 1 cut(s) 104
BbsI GAAGAC 3 cut(s) 51, 140, 383
Bbv12I GWGCWC 1 cut(s) 691
BbvI GCAGC 8 cut(s) 87, 97, 544, 616, 709, 835, 991, 994
BccI CCATC 2 cut(s) 321, 652
BceAI ACGGC 2 cut(s) 106, 1114
BcgI CGANNNNNNTGC 2 cut(s) 184, 218
BciT130I CCWGG 2 cut(s) 181, 791
BclI TGATCA 1 cut(s) 1099
BcnI CCSGG 1 cut(s) 992
BcoDI GTCTC 5 cut(s) 388, 406, 486, 709, 938
BfaI CTAG 3 cut(s) 353, 726, 759
BfmI CTRYAG 1 cut(s) 1065
BfoI RGCGCY 1 cut(s) 758
BmcAI AGTACT 1 cut(s) 913
Bme1390I CCNGG 3 cut(s) 181, 791, 992
Bme18I GGWCC 2 cut(s) 113, 322
BmgT120I GGNCC 4 cut(s) 113, 322, 574, 1122
BmiI GGNNCC 3 cut(s) 114, 156, 819
BmrFI CCNGG 3 cut(s) 181, 791, 992
BmrI ACTGGG 1 cut(s) 726
BmuI ACTGGG 1 cut(s) 726
BpiI GAAGAC 3 cut(s) 51, 140, 383
BplI GAGNNNNNCTC 2 cut(s) 175, 207
BpmI CTGGAG 2 cut(s) 202, 256
BpuEI CTTGAG 2 cut(s) 55, 758
BpuMI CCSGG 1 cut(s) 992
BsaHI GRCGYC 1 cut(s) 168
BsaI GGTCTC 2 cut(s) 486, 938
BsaJI CCNNGG 2 cut(s) 162, 588
BsaWI WCCGGW 1 cut(s) 319
BsaXI ACNNNNNCTCC 9 cut(s) 30, 212, 242, 426, 456, 563, 593, 947, 977
Bsc4I CCNNNNNNNGG 4 cut(s) 95, 387, 796, 997
Bse118I RCCGGY 1 cut(s) 576
Bse1I ACTGG 4 cut(s) 723, 732, 870, 919
Bse3DI GCAATG 1 cut(s) 573
BseAI TCCGGA 1 cut(s) 319
BseBI CCWGG 2 cut(s) 181, 791
BseDI CCNNGG 2 cut(s) 162, 588
BseGI GGATG 1 cut(s) 10
BseLI CCNNNNNNNGG 4 cut(s) 95, 387, 796, 997
BseMI GCAATG 1 cut(s) 573
BseMII CTCAG 1 cut(s) 657
BseNI ACTGG 4 cut(s) 723, 732, 870, 919
BseRI GAGGAG 8 cut(s) 38, 41, 403, 406, 444, 447, 971, 1010
BseXI GCAGC 8 cut(s) 87, 97, 544, 616, 709, 835, 991, 994
BsgI GTGCAG 2 cut(s) 86, 677
BshFI GGCC 2 cut(s) 576, 1123
BsiHKAI GWGCWC 1 cut(s) 691
BsiSI CCGG 5 cut(s) 320, 426, 577, 992, 1120
BslFI GGGAC 2 cut(s) 227, 714
BslI CCNNNNNNNGG 4 cut(s) 95, 387, 796, 997
BsmAI GTCTC 5 cut(s) 388, 406, 486, 709, 938
BsmFI GGGAC 2 cut(s) 227, 714
BsmI GAATGC 1 cut(s) 679
BsnI GGCC 2 cut(s) 576, 1123
Bso31I GGTCTC 2 cut(s) 486, 938
Bsp1286I GDGCHC 1 cut(s) 691
Bsp13I TCCGGA 1 cut(s) 319
Bsp143I GATC 4 cut(s) 154, 316, 793, 1099
BspACI CCGC 7 cut(s) 83, 116, 119, 231, 712, 906, 1010
BspANI GGCC 2 cut(s) 576, 1123
BspCNI CTCAG 1 cut(s) 658
BspEI TCCGGA 1 cut(s) 319
BspLI GGNNCC 3 cut(s) 114, 156, 819
BspMAI CTGCAG 1 cut(s) 1069
BspPI GGATC 4 cut(s) 149, 162, 311, 801
BspTNI GGTCTC 2 cut(s) 486, 938
BsrDI GCAATG 1 cut(s) 573
BsrFI RCCGGY 1 cut(s) 576
BsrI ACTGG 4 cut(s) 723, 732, 870, 919
BssAI RCCGGY 1 cut(s) 576
BssECI CCNNGG 2 cut(s) 162, 588
BssMI GATC 4 cut(s) 154, 316, 793, 1099
BssNI GRCGYC 1 cut(s) 168
BssSI CACGAG 1 cut(s) 104
Bst2BI CACGAG 1 cut(s) 104
Bst2UI CCWGG 2 cut(s) 181, 791
Bst4CI ACNGT 4 cut(s) 46, 263, 698, 887
Bst6I CTCTTC 1 cut(s) 243
BstACI GRCGYC 1 cut(s) 168
BstAPI GCANNNNNTGC 2 cut(s) 412, 1064
BstC8I GCNNGC 3 cut(s) 193, 787, 1065
BstDEI CTNAG 2 cut(s) 666, 898
BstDSI CCRYGG 2 cut(s) 162, 588
BstF5I GGATG 1 cut(s) 10
BstH2I RGCGCY 1 cut(s) 758
BstHHI GCGC 1 cut(s) 757
BstKTI GATC 4 cut(s) 157, 319, 796, 1102
BstMAI GTCTC 5 cut(s) 388, 406, 486, 709, 938
BstMBI GATC 4 cut(s) 154, 316, 793, 1099
BstMWI GCNNNNNNNGC 5 cut(s) 48, 192, 412, 754, 1064
BstNI CCWGG 2 cut(s) 181, 791
BstNSI RCATGY 2 cut(s) 42, 401
BstSCI CCNGG 3 cut(s) 179, 789, 990
BstSFI CTRYAG 1 cut(s) 1065
BstV1I GCAGC 8 cut(s) 87, 97, 544, 616, 709, 835, 991, 994
BstV2I GAAGAC 3 cut(s) 51, 140, 383
BstX2I RGATCY 2 cut(s) 154, 793
BstYI RGATCY 2 cut(s) 154, 793
BsuRI GGCC 2 cut(s) 576, 1123
BtgI CCRYGG 2 cut(s) 162, 588
BtsCI GGATG 1 cut(s) 10
BtsI GCAGTG 1 cut(s) 689
BtsIMutI CAGTG 2 cut(s) 689, 877
Cac8I GCNNGC 3 cut(s) 193, 787, 1065
CaiI CAGNNNCTG 2 cut(s) 796, 1064
CfoI GCGC 1 cut(s) 757
Cfr10I RCCGGY 1 cut(s) 576
Cfr13I GGNCC 4 cut(s) 113, 322, 574, 1122
CpoI CGGWCCG 1 cut(s) 322
CseI GACGC 1 cut(s) 176
Csp6I GTAC 2 cut(s) 902, 912
CspI CGGWCCG 1 cut(s) 322
CviAII CATG 3 cut(s) 39, 398, 562
CviQI GTAC 2 cut(s) 902, 912
DdeI CTNAG 2 cut(s) 666, 898
DpnI GATC 4 cut(s) 156, 318, 795, 1101
DpnII GATC 4 cut(s) 154, 316, 793, 1099
DraIII CACNNNGTG 1 cut(s) 109
Eam1104I CTCTTC 1 cut(s) 243
EarI CTCTTC 1 cut(s) 243
EciI GGCGGA 2 cut(s) 105, 220
Eco31I GGTCTC 2 cut(s) 486, 938
Eco47I GGWCC 2 cut(s) 113, 322
Eco57I CTGAAG 1 cut(s) 395
EcoRI GAATTC 1 cut(s) 332
EcoRII CCWGG 2 cut(s) 179, 789
FaeI CATG 3 cut(s) 42, 401, 565
FaqI GGGAC 2 cut(s) 227, 714
FatI CATG 3 cut(s) 38, 397, 561
FauI CCCGC 1 cut(s) 913
FauNDI CATATG 2 cut(s) 298, 950
FbaI TGATCA 1 cut(s) 1099
FblI GTMKAC 1 cut(s) 1032
FokI GGATG 1 cut(s) 17
FspBI CTAG 3 cut(s) 353, 726, 759
GlaI GCGC 1 cut(s) 756
GsuI CTGGAG 2 cut(s) 202, 256
HaeII RGCGCY 1 cut(s) 758
HaeIII GGCC 2 cut(s) 576, 1123
HapII CCGG 5 cut(s) 320, 426, 577, 992, 1120
HgaI GACGC 1 cut(s) 176
HhaI GCGC 1 cut(s) 757
Hin1I GRCGYC 1 cut(s) 168
Hin1II CATG 3 cut(s) 42, 401, 565
Hin6I GCGC 1 cut(s) 755
HinP1I GCGC 1 cut(s) 755
HincII GTYRAC 1 cut(s) 1033
HindII GTYRAC 1 cut(s) 1033
HindIII AAGCTT 1 cut(s) 73
HinfI GANTC 4 cut(s) 742, 762, 932, 1022
HpaII CCGG 5 cut(s) 320, 426, 577, 992, 1120
HphI GGTGA 2 cut(s) 28, 1088
Hpy166II GTNNAC 3 cut(s) 775, 890, 1033
Hpy188I TCNGA 2 cut(s) 308, 1027
Hpy188III TCNNGA 3 cut(s) 130, 320, 737
Hpy8I GTNNAC 3 cut(s) 775, 890, 1033
Hpy99I CGWCG 4 cut(s) 50, 67, 770, 1037
HpyAV CCTTC 1 cut(s) 168
HpyCH4III ACNGT 4 cut(s) 46, 263, 698, 887
HpyCH4IV ACGT 3 cut(s) 137, 768, 1035
HpyF10VI GCNNNNNNNGC 5 cut(s) 48, 192, 412, 754, 1064
HpyF3I CTNAG 2 cut(s) 666, 898
HpySE526I ACGT 3 cut(s) 137, 768, 1035
Hsp92I GRCGYC 1 cut(s) 168
Hsp92II CATG 3 cut(s) 42, 401, 565
HspAI GCGC 1 cut(s) 755
Kpn2I TCCGGA 1 cut(s) 319
Ksp22I TGATCA 1 cut(s) 1099
Kzo9I GATC 4 cut(s) 154, 316, 793, 1099
LmnI GCTCC 4 cut(s) 183, 434, 553, 958
Lsp1109I GCAGC 8 cut(s) 87, 97, 544, 616, 709, 835, 991, 994
MaeI CTAG 3 cut(s) 353, 726, 759
MaeII ACGT 3 cut(s) 137, 768, 1035
MaeIII GTNAC 2 cut(s) 34, 263
MalI GATC 4 cut(s) 156, 318, 795, 1101
MboI GATC 4 cut(s) 154, 316, 793, 1099
MboII GAAGA 6 cut(s) 51, 145, 230, 233, 388, 682
MflI RGATCY 2 cut(s) 154, 793
MhlI GDGCHC 1 cut(s) 691
MluCI AATT 3 cut(s) 332, 446, 544
MroI TCCGGA 1 cut(s) 319
MroXI GAANNNNTTC 1 cut(s) 836
MseI TTAA 1 cut(s) 384
MslI CAYNNNNRTG 2 cut(s) 506, 566
MspI CCGG 5 cut(s) 320, 426, 577, 992, 1120
MspR9I CCNGG 3 cut(s) 181, 791, 992
Mva1269I GAATGC 1 cut(s) 679
MvaI CCWGG 2 cut(s) 181, 791
MwoI GCNNNNNNNGC 5 cut(s) 48, 192, 412, 754, 1064
NciI CCSGG 1 cut(s) 992
NdeI CATATG 2 cut(s) 298, 950
NdeII GATC 4 cut(s) 154, 316, 793, 1099
NlaIII CATG 3 cut(s) 42, 401, 565
NlaIV GGNNCC 3 cut(s) 114, 156, 819
NmuCI GTSAC 1 cut(s) 34
NspI RCATGY 2 cut(s) 42, 401
PciI ACATGT 1 cut(s) 397
PcsI WCGNNNNNNNCGW 1 cut(s) 62
PctI GAATGC 1 cut(s) 679
PdmI GAANNNNTTC 1 cut(s) 836
PfeI GAWTC 4 cut(s) 742, 762, 932, 1022
PflMI CCANNNNNTGG 1 cut(s) 796
PfoI TCCNGGA 1 cut(s) 179
PscI ACATGT 1 cut(s) 397
Psp6I CCWGG 2 cut(s) 179, 789
PspGI CCWGG 2 cut(s) 179, 789
PspN4I GGNNCC 3 cut(s) 114, 156, 819
PspPI GGNCC 4 cut(s) 113, 322, 574, 1122
PstI CTGCAG 1 cut(s) 1069
PstNI CAGNNNCTG 2 cut(s) 796, 1064
PsuI RGATCY 2 cut(s) 154, 793
RsaI GTAC 2 cut(s) 903, 913
RsaNI GTAC 2 cut(s) 902, 912
RseI CAYNNNNRTG 2 cut(s) 506, 566
Rsr2I CGGWCCG 1 cut(s) 322
RsrII CGGWCCG 1 cut(s) 322
SalI GTCGAC 1 cut(s) 1031
SaqAI TTAA 1 cut(s) 384
Sau3AI GATC 4 cut(s) 154, 316, 793, 1099
Sau96I GGNCC 4 cut(s) 113, 322, 574, 1122
ScaI AGTACT 1 cut(s) 913
ScrFI CCNGG 3 cut(s) 181, 791, 992
SduI GDGCHC 1 cut(s) 691
SfcI CTRYAG 1 cut(s) 1065
SinI GGWCC 2 cut(s) 113, 322
SmiMI CAYNNNNRTG 2 cut(s) 506, 566
SmlI CTYRAG 2 cut(s) 70, 737
SmoI CTYRAG 2 cut(s) 70, 737
Sse9I AATT 3 cut(s) 332, 446, 544
SsiI CCGC 7 cut(s) 83, 116, 119, 231, 712, 906, 1010
SspMI CTAG 3 cut(s) 353, 726, 759
StyD4I CCNGG 3 cut(s) 179, 789, 990
TaaI ACNGT 4 cut(s) 46, 263, 698, 887
TaiI ACGT 3 cut(s) 140, 771, 1038
TaqI TCGA 4 cut(s) 247, 765, 866, 1032
TaqII GACCGA 2 cut(s) 339, 510
TasI AATT 3 cut(s) 332, 446, 544
TatI WGTACW 1 cut(s) 911
TauI GCSGC 2 cut(s) 85, 121
TfiI GAWTC 4 cut(s) 742, 762, 932, 1022
Tru1I TTAA 1 cut(s) 384
Tru9I TTAA 1 cut(s) 384
TscAI CASTG 2 cut(s) 696, 877
TseFI GTSAC 1 cut(s) 34
TseI GCWGC 8 cut(s) 85, 100, 532, 604, 722, 848, 1004, 1007
Tsp45I GTSAC 1 cut(s) 34
TspDTI ATGAA 1 cut(s) 268
TspGWI ACGGA 3 cut(s) 179, 527, 605
TspRI CASTG 2 cut(s) 696, 877
Van91I CCANNNNNTGG 1 cut(s) 796
VpaK11BI GGWCC 2 cut(s) 113, 322
XapI RAATTY 2 cut(s) 332, 544
XceI RCATGY 2 cut(s) 42, 401
XmiI GTMKAC 1 cut(s) 1032
XmnI GAANNNNTTC 1 cut(s) 836
XspI CTAG 3 cut(s) 353, 726, 759
ZrmI AGTACT 1 cut(s) 913
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.