Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6D

Orthogroup ID

OG0003357

Physical Location & Seq

Genomic Coordinates Forward (+)

65837246 .. 65839629

Gene Structure 2384 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6DG502800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 825 bp

ATGCAGGGTTTCAGAAAGGTTGATCCGGATAGATGGGAATTTGCTAATGAAGGGTTTCTTGGAGGGCAGAGGCATTTGTTGAAGACTATCAAGAGGAGGAGGCATGTGTCGCAGAGTACGCATGAAGATAGAGGAGGAGCTTGTGTTGAATTGGGACAGTACGGGCTGGAGACTGAGCTTGAAAGACTGAAAAGGGACAGAAATGTGTTGATGACTGAGATAGTGAGATTAAGGCAGCAACAACAGAATTCGAAAGAATTAGTCATTGCGATGGAGGATCGGTTGCAGACGACTGAGAAGAAACAGCAACAGATTATGAATTTCCTTGCAAAAGCACTCAAGAACCCATGTTTTATCCAAAACTTTGCTCAGAAGAGAGAGTTAGTTGGTGTTGGTGTAGGTCGAAAACGGAGACTAAGTGCTAGCCCCAGTGTGGAGAATTTGCAAGAGGTGCCTACAGCCCATGTTTTGGACATGGCAGCAAGTCAAGATCAGGGGGAGTTGTTAACCATGGAGTCAGACTTTGAGTCACTTTTCTCAGCTGCTGCTTTGGACAATGAATCAAGCAGTGATATCAACGGCTCTAATCTGACTTCAATACCCACAAGTGGTGGTGGCAACTTGGGCACTGTGAATGAGACAATTTGGGACCACCTGTGGAGTGATGAGCTCATTGGTGGAAATCCAGAGGAAGAGGTTGTGGTTGGGAATGACTCTGAAATCGATGTGGAGGTGGAGGATCTGGTTGCTGATCCTTCAGAATGGGGTGAGGACTTGCAAGACCTTGTTGATCAAATGGATTTTCTGATCAACCCCAATCCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000302 GO:0001067 GO:0001666 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006950 GO:0006979 GO:0006986 GO:0008150 GO:0009266 GO:0009314 GO:0009408 GO:0009416 GO:0009628 GO:0009636 GO:0009642 GO:0009644 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010033 GO:0010035 GO:0010200 GO:0010243 GO:0010286 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0033554 GO:0034605 GO:0034620 GO:0035966 GO:0035967 GO:0036293 GO:0036294 GO:0042221 GO:0042493 GO:0042542 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044212 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0046677 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0051716 GO:0060255 GO:0065007 GO:0070482 GO:0070887 GO:0071310 GO:0071453 GO:0071456 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1901698 GO:1901700 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HSF_DNA-bind

Protein Analysis

274

Amino Acids

30.75

Weight (kDa)

4.64

Isoelectric Point (pI)

49.49

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003357)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G26150 AT2G26150 AT2G26150 AT2G26150
fragaria_vesca	FvH4_2g31690 FvH4_2g31690 FvH4_2g31690 FvH4_2g31690 FvH4_2g31690 FvH4_2g31690 FvH4_2g31690
malus_domestica	MD08G1064100.v1.1 MD15G1057700.v1.1
prunus_persica	Prupe.1G410400_v2.0.a1 Prupe.1G410400_v2.0.a1 Prupe.1G410400_v2.0.a1 Prupe.1G410400_v2.0.a1 Prupe.1G410400_v2.0.a1 Prupe.1G410400_v2.0.a1 Prupe.1G410400_v2.0.a1 Prupe.1G410400_v2.0.a1
pyrus_communis	pycom08g05260 pycom15g05430
rosa_chinensis	RchiOBHm_Chr6g0311151
rosa_laevigata	RLG00000010432
rosa_multiflora	Rmu_sc0008967.1_g000010
rosa_roxburghii	Rroxscaffold_7G00157980
rosa_rugosa	Rorug06G0385800 Rorug06G0385900 Rorug06G0385900
rosa_samantha	Rh2CG294900 Rh6AG499900 Rh6BG510600 Rh6CG516300 Rh6DG502800
rosa_wichuraiana	Rw6G043540

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	451
AccB7I	CCANNNNNTGG	1 cut(s)	469
AccIII	TCCGGA	1 cut(s)	25
AclWI	GGATC	4 cut(s)	17, 285, 746, 747
AcsI	RAATTY	4 cut(s)	38, 247, 319, 439
AcuI	CTGAAG	1 cut(s)	741
AfaI	GTAC	2 cut(s)	118, 161
AfiI	CCNNNNNNNGG	3 cut(s)	433, 469, 608
AgsI	TTSAA	4 cut(s)	82, 149, 182, 597
AhdI	GACNNNNNGTC	1 cut(s)	526
AjuI	GAANNNNNNNTTGG	2 cut(s)	42, 74
AluBI	AGCT	4 cut(s)	140, 178, 542, 670
AluI	AGCT	4 cut(s)	140, 178, 542, 670
Alw21I	GWGCWC	1 cut(s)	672
Alw26I	GTCTC	3 cut(s)	164, 406, 632
AlwI	GGATC	4 cut(s)	17, 285, 746, 747
AlwNI	CAGNNNCTG	1 cut(s)	545
Aor13HI	TCCGGA	1 cut(s)	25
ApeKI	GCWGC	4 cut(s)	235, 479, 542, 545
ApoI	RAATTY	4 cut(s)	38, 247, 319, 439
Asp700I	GAANNNNTTC	1 cut(s)	54
AspS9I	GGNCC	1 cut(s)	649
AsuHPI	GGTGA	1 cut(s)	779
AsuII	TTCGAA	1 cut(s)	251
AsuNHI	GCTAGC	1 cut(s)	422
AvaII	GGWCC	1 cut(s)	649
BaeGI	GKGCMC	1 cut(s)	629
BanI	GGYRCC	1 cut(s)	451
BanII	GRGCYC	1 cut(s)	672
BbsI	GAAGAC	1 cut(s)	89
Bbv12I	GWGCWC	1 cut(s)	672
BbvI	GCAGC	4 cut(s)	247, 491, 529, 532
BccI	CCATC	2 cut(s)	27, 265
BceAI	ACGGC	1 cut(s)	595
BclI	TGATCA	2 cut(s)	790, 807
BcoDI	GTCTC	3 cut(s)	164, 406, 632
BfaI	CTAG	1 cut(s)	423
BfmI	CTRYAG	1 cut(s)	456
BisI	GCNGC	4 cut(s)	236, 480, 543, 546
BlsI	GCNGC	4 cut(s)	237, 481, 544, 547
Bme18I	GGWCC	1 cut(s)	649
BmeRI	GACNNNNNGTC	1 cut(s)	526
BmgT120I	GGNCC	1 cut(s)	649
BmiI	GGNNCC	2 cut(s)	453, 650
BmrI	ACTGGG	1 cut(s)	423
BmtI	GCTAGC	1 cut(s)	426
BmuI	ACTGGG	1 cut(s)	423
BpiI	GAAGAC	1 cut(s)	89
BpmI	CTGGAG	1 cut(s)	188
Bpu14I	TTCGAA	1 cut(s)	251
BpuEI	CTTGAG	1 cut(s)	323
Bsa29I	ATCGAT	1 cut(s)	723
BsaJI	CCNNGG	1 cut(s)	510
BsaWI	WCCGGW	1 cut(s)	25
BsaXI	ACNNNNNCTCC	6 cut(s)	129, 159, 266, 296, 403, 433
Bsc4I	CCNNNNNNNGG	3 cut(s)	433, 469, 608
Bse1I	ACTGG	1 cut(s)	429
Bse3DI	GCAATG	1 cut(s)	264
BseAI	TCCGGA	1 cut(s)	25
BseCI	ATCGAT	1 cut(s)	723
BseDI	CCNNGG	1 cut(s)	510
BseLI	CCNNNNNNNGG	3 cut(s)	433, 469, 608
BseMI	GCAATG	1 cut(s)	264
BseMII	CTCAG	5 cut(s)	165, 207, 285, 383, 552
BseNI	ACTGG	1 cut(s)	429
BseRI	GAGGAG	4 cut(s)	109, 112, 147, 150
BseSI	GKGCMC	1 cut(s)	629
BseXI	GCAGC	4 cut(s)	247, 491, 529, 532
BshNI	GGYRCC	1 cut(s)	451
BshVI	ATCGAT	1 cut(s)	723
BsiHKAI	GWGCWC	1 cut(s)	672
BsiSI	CCGG	1 cut(s)	26
BslFI	GGGAC	3 cut(s)	168, 209, 662
BslI	CCNNNNNNNGG	3 cut(s)	433, 469, 608
BsmAI	GTCTC	3 cut(s)	164, 406, 632
BsmFI	GGGAC	3 cut(s)	168, 209, 662
Bsp119I	TTCGAA	1 cut(s)	251
Bsp1286I	GDGCHC	2 cut(s)	629, 672
Bsp13I	TCCGGA	1 cut(s)	25
Bsp143I	GATC	7 cut(s)	22, 277, 490, 739, 751, 790, 807
Bsp19I	CCATGG	1 cut(s)	510
BspCNI	CTCAG	5 cut(s)	166, 208, 286, 382, 551
BspDI	ATCGAT	1 cut(s)	723
BspEI	TCCGGA	1 cut(s)	25
BspLI	GGNNCC	2 cut(s)	453, 650
BspOI	GCTAGC	1 cut(s)	426
BspPI	GGATC	4 cut(s)	17, 285, 746, 747
BspT104I	TTCGAA	1 cut(s)	251
BspT107I	GGYRCC	1 cut(s)	451
BsrDI	GCAATG	1 cut(s)	264
BsrI	ACTGG	1 cut(s)	429
BssECI	CCNNGG	1 cut(s)	510
BssMI	GATC	7 cut(s)	22, 277, 490, 739, 751, 790, 807
BssT1I	CCWWGG	1 cut(s)	510
Bst4CI	ACNGT	2 cut(s)	159, 631
Bst6I	CTCTTC	2 cut(s)	368, 687
BstAPI	GCANNNNNTGC	1 cut(s)	451
BstBI	TTCGAA	1 cut(s)	251
BstC8I	GCNNGC	1 cut(s)	424
BstDEI	CTNAG	6 cut(s)	174, 216, 294, 369, 416, 538
BstDSI	CCRYGG	1 cut(s)	510
BstKTI	GATC	7 cut(s)	25, 280, 493, 742, 754, 793, 810
BstMAI	GTCTC	3 cut(s)	164, 406, 632
BstMBI	GATC	7 cut(s)	22, 277, 490, 739, 751, 790, 807
BstMWI	GCNNNNNNNGC	4 cut(s)	109, 118, 451, 624
BstNSI	RCATGY	1 cut(s)	107
BstSFI	CTRYAG	1 cut(s)	456
BstSLI	GKGCMC	1 cut(s)	629
BstV1I	GCAGC	4 cut(s)	247, 491, 529, 532
BstV2I	GAAGAC	1 cut(s)	89
BstX2I	RGATCY	1 cut(s)	739
BstYI	RGATCY	1 cut(s)	739
Bsu15I	ATCGAT	1 cut(s)	723
BsuTUI	ATCGAT	1 cut(s)	723
BtgI	CCRYGG	1 cut(s)	510
BtgZI	GCGATG	1 cut(s)	284
BtsI	GCAGTG	1 cut(s)	574
BtsIMutI	CAGTG	3 cut(s)	436, 574, 627
Cac8I	GCNNGC	1 cut(s)	424
CaiI	CAGNNNCTG	1 cut(s)	545
Cfr13I	GGNCC	1 cut(s)	649
ClaI	ATCGAT	1 cut(s)	723
Csp6I	GTAC	2 cut(s)	117, 160
CviAII	CATG	6 cut(s)	104, 122, 348, 464, 475, 511
CviJI	RGCY	8 cut(s)	140, 166, 178, 426, 461, 542, 582, 670
CviKI_1	RGCY	8 cut(s)	140, 166, 178, 426, 461, 542, 582, 670
CviQI	GTAC	2 cut(s)	117, 160
DdeI	CTNAG	6 cut(s)	174, 216, 294, 369, 416, 538
DpnI	GATC	7 cut(s)	24, 279, 492, 741, 753, 792, 809
DpnII	GATC	7 cut(s)	22, 277, 490, 739, 751, 790, 807
DriI	GACNNNNNGTC	1 cut(s)	526
Eam1104I	CTCTTC	2 cut(s)	368, 687
Eam1105I	GACNNNNNGTC	1 cut(s)	526
EarI	CTCTTC	2 cut(s)	368, 687
Ecl136II	GAGCTC	1 cut(s)	670
Eco130I	CCWWGG	1 cut(s)	510
Eco24I	GRGCYC	1 cut(s)	672
Eco32I	GATATC	1 cut(s)	574
Eco47I	GGWCC	1 cut(s)	649
Eco53kI	GAGCTC	1 cut(s)	670
Eco57I	CTGAAG	1 cut(s)	741
EcoICRI	GAGCTC	1 cut(s)	670
EcoRI	GAATTC	1 cut(s)	247
EcoRV	GATATC	1 cut(s)	574
EcoT14I	CCWWGG	1 cut(s)	510
EcoT38I	GRGCYC	1 cut(s)	672
ErhI	CCWWGG	1 cut(s)	510
FaeI	CATG	6 cut(s)	107, 125, 351, 467, 478, 514
FaiI	YATR	7 cut(s)	105, 123, 317, 349, 465, 476, 512
FalI	AAGNNNNNCTT	2 cut(s)	42, 74
FaqI	GGGAC	3 cut(s)	168, 209, 662
FatI	CATG	6 cut(s)	103, 121, 347, 463, 474, 510
FbaI	TGATCA	2 cut(s)	790, 807
Fnu4HI	GCNGC	4 cut(s)	236, 480, 543, 546
FriOI	GRGCYC	1 cut(s)	672
Fsp4HI	GCNGC	4 cut(s)	236, 480, 543, 546
FspBI	CTAG	1 cut(s)	423
GluI	GCNGC	4 cut(s)	236, 480, 543, 546
GsuI	CTGGAG	1 cut(s)	188
HapII	CCGG	1 cut(s)	26
Hin1II	CATG	6 cut(s)	107, 125, 351, 467, 478, 514
HincII	GTYRAC	1 cut(s)	507
HindII	GTYRAC	1 cut(s)	507
HinfI	GANTC	4 cut(s)	515, 527, 560, 713
HpaI	GTTAAC	1 cut(s)	507
HpaII	CCGG	1 cut(s)	26
HphI	GGTGA	1 cut(s)	779
Hpy166II	GTNNAC	1 cut(s)	507
Hpy188I	TCNGA	7 cut(s)	14, 372, 520, 591, 718, 760, 807
Hpy188III	TCNNGA	5 cut(s)	26, 91, 340, 488, 686
Hpy8I	GTNNAC	1 cut(s)	507
HpyAV	CCTTC	2 cut(s)	44, 765
HpyCH4III	ACNGT	2 cut(s)	159, 631
HpyCH4V	TGCA	5 cut(s)	4, 286, 329, 445, 778
HpyF10VI	GCNNNNNNNGC	4 cut(s)	109, 118, 451, 624
HpyF3I	CTNAG	6 cut(s)	174, 216, 294, 369, 416, 538
Hsp92II	CATG	6 cut(s)	107, 125, 351, 467, 478, 514
Kpn2I	TCCGGA	1 cut(s)	25
Ksp22I	TGATCA	2 cut(s)	790, 807
KspAI	GTTAAC	1 cut(s)	507
Kzo9I	GATC	7 cut(s)	22, 277, 490, 739, 751, 790, 807
LmnI	GCTCC	1 cut(s)	137
LpnPI	CCDG	7 cut(s)	39, 152, 442, 479, 668, 699, 728
Lsp1109I	GCAGC	4 cut(s)	247, 491, 529, 532
MaeI	CTAG	1 cut(s)	423
MaeIII	GTNAC	1 cut(s)	528
MalI	GATC	7 cut(s)	24, 279, 492, 741, 753, 792, 809
MboI	GATC	7 cut(s)	22, 277, 490, 739, 751, 790, 807
MboII	GAAGA	5 cut(s)	94, 137, 310, 385, 704
MflI	RGATCY	1 cut(s)	739
MhlI	GDGCHC	2 cut(s)	629, 672
MluCI	AATT	7 cut(s)	38, 149, 247, 257, 319, 439, 642
MlyI	GAGTC	3 cut(s)	524, 536, 707
MroI	TCCGGA	1 cut(s)	25
MroXI	GAANNNNTTC	1 cut(s)	54
MseI	TTAA	2 cut(s)	230, 506
MslI	CAYNNNNRTG	1 cut(s)	269
MspA1I	CMGCKG	1 cut(s)	542
MspI	CCGG	1 cut(s)	26
MwoI	GCNNNNNNNGC	4 cut(s)	109, 118, 451, 624
NcoI	CCATGG	1 cut(s)	510
NdeII	GATC	7 cut(s)	22, 277, 490, 739, 751, 790, 807
NheI	GCTAGC	1 cut(s)	422
NlaIII	CATG	6 cut(s)	107, 125, 351, 467, 478, 514
NlaIV	GGNNCC	2 cut(s)	453, 650
NmuCI	GTSAC	1 cut(s)	528
NspI	RCATGY	1 cut(s)	107
NspV	TTCGAA	1 cut(s)	251
PdmI	GAANNNNTTC	1 cut(s)	54
PfeI	GAWTC	1 cut(s)	560
PflMI	CCANNNNNTGG	1 cut(s)	469
PkrI	GCNGC	4 cut(s)	237, 481, 544, 547
PleI	GAGTC	3 cut(s)	523, 535, 707
PpsI	GAGTC	3 cut(s)	523, 535, 707
Psp124BI	GAGCTC	1 cut(s)	672
PspN4I	GGNNCC	2 cut(s)	453, 650
PspPI	GGNCC	1 cut(s)	649
PstNI	CAGNNNCTG	1 cut(s)	545
PsuI	RGATCY	1 cut(s)	739
PvuII	CAGCTG	1 cut(s)	542
RsaI	GTAC	2 cut(s)	118, 161
RsaNI	GTAC	2 cut(s)	117, 160
RseI	CAYNNNNRTG	1 cut(s)	269
SacI	GAGCTC	1 cut(s)	672
SaqAI	TTAA	2 cut(s)	230, 506
SatI	GCNGC	4 cut(s)	236, 480, 543, 546
Sau3AI	GATC	7 cut(s)	22, 277, 490, 739, 751, 790, 807
Sau96I	GGNCC	1 cut(s)	649
SchI	GAGTC	3 cut(s)	524, 536, 707
SduI	GDGCHC	2 cut(s)	629, 672
SfcI	CTRYAG	1 cut(s)	456
SfuI	TTCGAA	1 cut(s)	251
SinI	GGWCC	1 cut(s)	649
SmiMI	CAYNNNNRTG	1 cut(s)	269
SmlI	CTYRAG	1 cut(s)	338
SmoI	CTYRAG	1 cut(s)	338
Sse9I	AATT	7 cut(s)	38, 149, 247, 257, 319, 439, 642
SspMI	CTAG	1 cut(s)	423
SstI	GAGCTC	1 cut(s)	672
StyI	CCWWGG	1 cut(s)	510
TaaI	ACNGT	2 cut(s)	159, 631
TaqI	TCGA	3 cut(s)	251, 403, 723
TasI	AATT	7 cut(s)	38, 149, 247, 257, 319, 439, 642
TfiI	GAWTC	1 cut(s)	560
Tru1I	TTAA	2 cut(s)	230, 506
Tru9I	TTAA	2 cut(s)	230, 506
TscAI	CASTG	3 cut(s)	436, 574, 634
TseFI	GTSAC	1 cut(s)	528
TseI	GCWGC	4 cut(s)	235, 479, 542, 545
Tsp45I	GTSAC	1 cut(s)	528
TspDTI	ATGAA	4 cut(s)	63, 138, 332, 573
TspGWI	ACGGA	1 cut(s)	424
TspRI	CASTG	3 cut(s)	436, 574, 634
Van91I	CCANNNNNTGG	1 cut(s)	469
VpaK11BI	GGWCC	1 cut(s)	649
XapI	RAATTY	4 cut(s)	38, 247, 319, 439
XceI	RCATGY	1 cut(s)	107
XmnI	GAANNNNTTC	1 cut(s)	54
XspI	CTAG	1 cut(s)	423

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.