Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb2

Orthogroup ID

OG0015278

Physical Location & Seq

Genomic Coordinates Reverse (-)

24776287 .. 24781474

Gene Structure 5188 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_2g32820.t2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1293 bp

ATGAAGAAGGAGCTAGGACTACTGTTTTGGATGGCTATGATGATGTACACGTGCCAAGCAGTCAGCAACCTCCACCCTCTGATCCTGATACCTGGAAATGGCGGGAATCAGTTGGAAGCGAGACTGACCAAAGATTACAAGCCCAGTAGTTTGTTATGTAACCGTTGGTACCCGATTGAGAGGAACAAGGAGGGTTGGTTCCGGCTCTGGTTCGACCCGACTGTTCTGTTAGCTCCGTTCACTACTTGCTTTGCTCAGAGGATGACGCTCTATTACGACCAGGAGAAGGATGATTACAGCAATGCCCCTGGGGTTGAAACCAGAGTCCCACACTTCGGCTCCTCTCAGTCCCTTCTCTTCCTTGACCCCAATCTCAAGAAGATCACAACATACATGGCACCCCTAGTGGAATCTTTGGAAAACATTGGCTATGTCGACGGCAAAACTATGTTCGGAGCGCCGTACGATTTTCGATATGGTTTAGCACCTAAAGATCATCCATCCCATGTTGGTTCTAAGTTCCTGAAAGACCTAAAATACTTGGTGGAAAAAGCCAGCAATTCTAATGGGGGAAAGCCGGTGATACTTGTCTCTCACAGCTTAGGAGGCCTCTTTGCTCTTCAACTTTTGAATCGTAACAAGCCCTCTTGGCGGCAAAAGTTCATCAAGCATTTTGTTGCACTCTCTGCACCGTGGGGTGGCACTGTGGACGAAATGCTCACCTTTGCTTCAGGGAACACACTAGGAGTCCCACTAGTGAATCCATTGTTAGTGAGAGATGAGCAGAGAAGCTCAGAAAGCAATCTATGGCTGATGCCTAATCCGAAGCTATTCAGGAGCGAAAAACCAATAGTGATTACCCCAAATGCTACATATTCAGCTCATAACATTCCCCAATTCCTCAATGACATTGGATTTCCCGAAGGAATTCATCCCTTCAAAACACGCATTTTGGCCATGATGGATCAGCTTGAAGCTCCCGGAGTGCCTATCACGTGTGTGATCGGAACCGGTGTGTGCACAGCAGAGACTTTGTACTATGACAAAAGAGGCTTTGATGAGCAACCAGAGATTGTTTATGGGGACGGAGACGGAACTGTTAACATGGTGAGCTTGCTGGGACATGAATCTCTATGGTCTAATGCGAAAAATCAAACTCTGAAAACGATCAGAGTTCCTGGGGTGACTCATACCGAGATACTCAAAGATGATGGTGCAGTTGGTGAAGTTGTTAGAGAAATCTCTGGAATCAATTCTCAGTTCAAGTTTGTTGAGAATGTAAATGTGCAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0016020 GO:0031090 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0098588 GO:0098805

KEGG Pathways

Metabolic & Signaling

ko00564 ko04142 map00564 map04142

Pfam Domains

Protein Families

LCAT

Protein Analysis

431

Amino Acids

48.18

Weight (kDa)

6.8

Isoelectric Point (pI)

39.35

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LCAT	PF02450	67 - 303	1.2e-41	Lecithin:cholesterol acyltransferase
Hydrolase_4	PF12146	172 - 222	1.4e-06	Serine aminopeptidase, S33

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0015278)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G27480
fragaria_vesca	FvH4_2g32820 FvH4_2g32820
prunus_persica	Prupe.1G420700_v2.0.a1
pyrus_communis	pycom08g06610
rosa_chinensis	RchiOBHm_Chr6g0309881
rosa_laevigata	RLG00000010527
rosa_multiflora	Rmu_sc0006780.1_g000001
rosa_roxburghii	Rroxscaffold_7G00159080
rosa_rugosa	Rorug06G0375600
rosa_samantha	Rh6AG489300 Rh6AG489400 Rh6BG498800 Rh6CG503600 Rh6DG489700
rosa_wichuraiana	Rw6G042590

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	168
AccB1I	GGYRCC	2 cut(s)	168, 397
AccI	GTMKAC	1 cut(s)	435
AciI	CCGC	2 cut(s)	102, 652
AclWI	GGATC	2 cut(s)	76, 972
AcoI	YGGCCR	1 cut(s)	954
AcsI	RAATTY	1 cut(s)	927
AcuI	CTGAAG	1 cut(s)	714
AcvI	CACGTG	2 cut(s)	51, 996
AfaI	GTAC	4 cut(s)	47, 170, 464, 1037
AfiI	CCNNNNNNNGG	5 cut(s)	98, 286, 335, 651, 698
AflIII	ACRYGT	2 cut(s)	48, 995
AgeI	ACCGGT	1 cut(s)	1010
AgsI	TTSAA	6 cut(s)	317, 623, 631, 940, 974, 1264
AhlI	ACTAGT	1 cut(s)	754
AjnI	CCWGG	4 cut(s)	91, 279, 307, 1177
AleI	CACNNNNGTG	1 cut(s)	998
AloI	GAACNNNNNNTCC	2 cut(s)	182, 214
AluBI	AGCT	9 cut(s)	13, 233, 600, 792, 829, 881, 970, 977, 1113
AluI	AGCT	9 cut(s)	13, 233, 600, 792, 829, 881, 970, 977, 1113
Alw21I	GWGCWC	1 cut(s)	1022
Alw26I	GTCTC	4 cut(s)	115, 595, 1022, 1083
Alw44I	GTGCAC	1 cut(s)	1018
AlwI	GGATC	2 cut(s)	76, 972
AoxI	GGCC	2 cut(s)	607, 954
ApaLI	GTGCAC	1 cut(s)	1018
ApoI	RAATTY	1 cut(s)	927
ArsI	GACNNNNNNTTYG	2 cut(s)	9, 41
AsiGI	ACCGGT	1 cut(s)	1010
Asp700I	GAANNNNTTC	3 cut(s)	830, 927, 1252
Asp718I	GGTACC	1 cut(s)	168
AspLEI	GCGC	1 cut(s)	460
AsuC2I	CCSGG	1 cut(s)	981
AsuHPI	GGTGA	5 cut(s)	592, 712, 1120, 1195, 1235
BaeGI	GKGCMC	1 cut(s)	1022
BalI	TGGCCA	1 cut(s)	956
BanI	GGYRCC	2 cut(s)	168, 397
BarI	GAAGNNNNNNTAC	2 cut(s)	278, 310
BbrPI	CACGTG	2 cut(s)	51, 996
Bbv12I	GWGCWC	1 cut(s)	1022
BccI	CCATC	4 cut(s)	25, 508, 955, 1205
BceAI	ACGGC	2 cut(s)	445, 454
BciT130I	CCWGG	4 cut(s)	93, 281, 309, 1179
BcnI	CCSGG	1 cut(s)	981
BcoDI	GTCTC	4 cut(s)	115, 595, 1022, 1083
BcuI	ACTAGT	1 cut(s)	754
BfaI	CTAG	4 cut(s)	14, 404, 743, 755
BfoI	RGCGCY	1 cut(s)	461
BglI	GCCNNNNNGGC	1 cut(s)	649
BisI	GCNGC	1 cut(s)	653
BlsI	GCNGC	1 cut(s)	654
Bme1390I	CCNGG	5 cut(s)	93, 281, 309, 981, 1179
BmiI	GGNNCC	5 cut(s)	170, 200, 340, 399, 1009
BmrFI	CCNGG	5 cut(s)	93, 281, 309, 981, 1179
BmrI	ACTGGG	1 cut(s)	138
BmsI	GCATC	1 cut(s)	804
BmuI	ACTGGG	1 cut(s)	138
Bpu10I	CCTNAGC	1 cut(s)	601
BpuEI	CTTGAG	1 cut(s)	359
BpuMI	CCSGG	1 cut(s)	981
BsaAI	YACGTR	2 cut(s)	51, 996
BsaJI	CCNNGG	4 cut(s)	307, 308, 692, 1178
BsaWI	WCCGGW	1 cut(s)	1010
BsaXI	ACNNNNNCTCC	4 cut(s)	182, 212, 323, 353
Bsc4I	CCNNNNNNNGG	5 cut(s)	98, 286, 335, 651, 698
Bse118I	RCCGGY	2 cut(s)	577, 1010
Bse1I	ACTGG	1 cut(s)	144
Bse3DI	GCAATG	1 cut(s)	307
BseBI	CCWGG	4 cut(s)	93, 281, 309, 1179
BseDI	CCNNGG	4 cut(s)	307, 308, 692, 1178
BseGI	GGATG	6 cut(s)	36, 267, 295, 496, 500, 931
BseLI	CCNNNNNNNGG	5 cut(s)	98, 286, 335, 651, 698
BseMI	GCAATG	1 cut(s)	307
BseMII	CTCAG	4 cut(s)	269, 359, 807, 1271
BseNI	ACTGG	1 cut(s)	144
BseRI	GAGGAG	1 cut(s)	331
BseSI	GKGCMC	1 cut(s)	1022
BseYI	CCCAGC	1 cut(s)	1117
BsgI	GTGCAG	2 cut(s)	672, 1236
BshFI	GGCC	2 cut(s)	609, 956
BshNI	GGYRCC	2 cut(s)	168, 397
BshTI	ACCGGT	1 cut(s)	1010
BsiHKAI	GWGCWC	1 cut(s)	1022
BsiSI	CCGG	4 cut(s)	202, 578, 981, 1011
BsiWI	CGTACG	1 cut(s)	462
BslFI	GGGAC	5 cut(s)	311, 334, 734, 1097, 1134
BslI	CCNNNNNNNGG	5 cut(s)	98, 286, 335, 651, 698
BsmAI	GTCTC	4 cut(s)	115, 595, 1022, 1083
BsmBI	CGTCTC	1 cut(s)	1083
BsmFI	GGGAC	5 cut(s)	311, 334, 734, 1097, 1134
BsnI	GGCC	2 cut(s)	609, 956
Bsp1286I	GDGCHC	1 cut(s)	1022
Bsp1407I	TGTACA	1 cut(s)	45
Bsp143I	GATC	6 cut(s)	81, 381, 493, 964, 1002, 1167
BspACI	CCGC	2 cut(s)	102, 652
BspANI	GGCC	2 cut(s)	609, 956
BspCNI	CTCAG	4 cut(s)	268, 358, 806, 1270
BspLI	GGNNCC	5 cut(s)	170, 200, 340, 399, 1009
BspPI	GGATC	2 cut(s)	76, 972
BspQI	GCTCTTC	1 cut(s)	624
BspT107I	GGYRCC	2 cut(s)	168, 397
BsrDI	GCAATG	1 cut(s)	307
BsrFI	RCCGGY	2 cut(s)	577, 1010
BsrGI	TGTACA	1 cut(s)	45
BsrI	ACTGG	1 cut(s)	144
BssAI	RCCGGY	2 cut(s)	577, 1010
BssECI	CCNNGG	4 cut(s)	307, 308, 692, 1178
BssMI	GATC	6 cut(s)	81, 381, 493, 964, 1002, 1167
Bst2UI	CCWGG	4 cut(s)	93, 281, 309, 1179
Bst4CI	ACNGT	6 cut(s)	24, 164, 223, 693, 706, 1099
Bst6I	CTCTTC	2 cut(s)	362, 624
BstAPI	GCANNNNNTGC	1 cut(s)	686
BstAUI	TGTACA	1 cut(s)	45
BstBAI	YACGTR	2 cut(s)	51, 996
BstC8I	GCNNGC	2 cut(s)	556, 1115
BstDEI	CTNAG	6 cut(s)	255, 345, 516, 601, 793, 1257
BstDSI	CCRYGG	1 cut(s)	692
BstF5I	GGATG	6 cut(s)	36, 267, 295, 496, 500, 931
BstH2I	RGCGCY	1 cut(s)	461
BstHHI	GCGC	1 cut(s)	460
BstKTI	GATC	6 cut(s)	84, 384, 496, 967, 1005, 1170
BstMAI	GTCTC	4 cut(s)	115, 595, 1022, 1083
BstMBI	GATC	6 cut(s)	81, 381, 493, 964, 1002, 1167
BstMWI	GCNNNNNNNGC	4 cut(s)	606, 649, 686, 798
BstNI	CCWGG	4 cut(s)	93, 281, 309, 1179
BstSCI	CCNGG	5 cut(s)	91, 279, 307, 979, 1177
BstSLI	GKGCMC	1 cut(s)	1022
BsuRI	GGCC	2 cut(s)	609, 956
BtgI	CCRYGG	1 cut(s)	692
BtsCI	GGATG	6 cut(s)	36, 267, 295, 496, 500, 931
BtsIMutI	CAGTG	1 cut(s)	702
Cac8I	GCNNGC	2 cut(s)	556, 1115
CfoI	GCGC	1 cut(s)	460
Cfr10I	RCCGGY	2 cut(s)	577, 1010
CseI	GACGC	1 cut(s)	274
Csp6I	GTAC	4 cut(s)	46, 169, 463, 1036
CspAI	ACCGGT	1 cut(s)	1010
CviAII	CATG	5 cut(s)	394, 506, 958, 1105, 1124
CviQI	GTAC	4 cut(s)	46, 169, 463, 1036
DdeI	CTNAG	6 cut(s)	255, 345, 516, 601, 793, 1257
DpnI	GATC	6 cut(s)	83, 383, 495, 966, 1004, 1169
DpnII	GATC	6 cut(s)	81, 381, 493, 964, 1002, 1167
EaeI	YGGCCR	1 cut(s)	954
Eam1104I	CTCTTC	2 cut(s)	362, 624
EarI	CTCTTC	2 cut(s)	362, 624
Eco147I	AGGCCT	1 cut(s)	609
Eco57I	CTGAAG	1 cut(s)	714
Eco72I	CACGTG	2 cut(s)	51, 996
EcoRI	GAATTC	1 cut(s)	927
EcoRII	CCWGG	4 cut(s)	91, 279, 307, 1177
Esp3I	CGTCTC	1 cut(s)	1083
FaeI	CATG	5 cut(s)	397, 509, 961, 1108, 1127
FaqI	GGGAC	5 cut(s)	311, 334, 734, 1097, 1134
FatI	CATG	5 cut(s)	393, 505, 957, 1104, 1123
FauI	CCCGC	1 cut(s)	95
FblI	GTMKAC	1 cut(s)	435
Fnu4HI	GCNGC	1 cut(s)	653
FokI	GGATG	6 cut(s)	43, 274, 302, 483, 487, 918
Fsp4HI	GCNGC	1 cut(s)	653
FspBI	CTAG	4 cut(s)	14, 404, 743, 755
GlaI	GCGC	1 cut(s)	459
GluI	GCNGC	1 cut(s)	653
GsaI	CCCAGC	1 cut(s)	1121
HaeII	RGCGCY	1 cut(s)	461
HaeIII	GGCC	2 cut(s)	609, 956
HapII	CCGG	4 cut(s)	202, 578, 981, 1011
HgaI	GACGC	1 cut(s)	274
HhaI	GCGC	1 cut(s)	460
Hin1II	CATG	5 cut(s)	397, 509, 961, 1108, 1127
Hin6I	GCGC	1 cut(s)	458
HinP1I	GCGC	1 cut(s)	458
HincII	GTYRAC	2 cut(s)	436, 1102
HindII	GTYRAC	2 cut(s)	436, 1102
HinfI	GANTC	9 cut(s)	106, 324, 410, 631, 747, 760, 1127, 1186, 1248
HpaI	GTTAAC	1 cut(s)	1102
HpaII	CCGG	4 cut(s)	202, 578, 981, 1011
HphI	GGTGA	5 cut(s)	592, 712, 1120, 1195, 1235
Hpy166II	GTNNAC	6 cut(s)	48, 240, 436, 709, 1020, 1102
Hpy188I	TCNGA	8 cut(s)	81, 258, 455, 796, 825, 1007, 1161, 1172
Hpy188III	TCNNGA	6 cut(s)	85, 376, 523, 835, 920, 1245
Hpy8I	GTNNAC	6 cut(s)	48, 240, 436, 709, 1020, 1102
Hpy99I	CGWCG	1 cut(s)	440
HpyAV	CCTTC	4 cut(s)	280, 362, 917, 946
HpyCH4III	ACNGT	6 cut(s)	24, 164, 223, 693, 706, 1099
HpyCH4IV	ACGT	2 cut(s)	50, 995
HpyCH4V	TGCA	5 cut(s)	680, 689, 1020, 1217, 1288
HpyF10VI	GCNNNNNNNGC	4 cut(s)	606, 649, 686, 798
HpyF3I	CTNAG	6 cut(s)	255, 345, 516, 601, 793, 1257
HpySE526I	ACGT	2 cut(s)	50, 995
Hsp92II	CATG	5 cut(s)	397, 509, 961, 1108, 1127
HspAI	GCGC	1 cut(s)	458
KpnI	GGTACC	1 cut(s)	172
KspAI	GTTAAC	1 cut(s)	1102
Kzo9I	GATC	6 cut(s)	81, 381, 493, 964, 1002, 1167
LguI	GCTCTTC	1 cut(s)	624
LmnI	GCTCC	6 cut(s)	10, 238, 344, 455, 837, 982
LweI	GCATC	1 cut(s)	804
MaeI	CTAG	4 cut(s)	14, 404, 743, 755
MaeII	ACGT	2 cut(s)	50, 995
MaeIII	GTNAC	3 cut(s)	158, 635, 1183
MalI	GATC	6 cut(s)	83, 383, 495, 966, 1004, 1169
MboI	GATC	6 cut(s)	81, 381, 493, 964, 1002, 1167
MboII	GAAGA	4 cut(s)	16, 349, 391, 611
MhlI	GDGCHC	1 cut(s)	1022
MlsI	TGGCCA	1 cut(s)	956
MluCI	AATT	4 cut(s)	559, 896, 927, 1252
MluNI	TGGCCA	1 cut(s)	956
MlyI	GAGTC	3 cut(s)	333, 756, 1180
MmeI	TCCRAC	1 cut(s)	93
Mox20I	TGGCCA	1 cut(s)	956
MroXI	GAANNNNTTC	3 cut(s)	830, 927, 1252
MscI	TGGCCA	1 cut(s)	956
MseI	TTAA	1 cut(s)	1101
MslI	CAYNNNNRTG	1 cut(s)	998
Msp20I	TGGCCA	1 cut(s)	956
MspI	CCGG	4 cut(s)	202, 578, 981, 1011
MspR9I	CCNGG	5 cut(s)	93, 281, 309, 981, 1179
MvaI	CCWGG	4 cut(s)	93, 281, 309, 1179
MwoI	GCNNNNNNNGC	4 cut(s)	606, 649, 686, 798
NciI	CCSGG	1 cut(s)	981
NdeII	GATC	6 cut(s)	81, 381, 493, 964, 1002, 1167
NlaIII	CATG	5 cut(s)	397, 509, 961, 1108, 1127
NlaIV	GGNNCC	5 cut(s)	170, 200, 340, 399, 1009
NmuCI	GTSAC	1 cut(s)	1183
OliI	CACNNNNGTG	1 cut(s)	998
PasI	CCCWGGG	1 cut(s)	308
PceI	AGGCCT	1 cut(s)	609
PciSI	GCTCTTC	1 cut(s)	624
PdmI	GAANNNNTTC	3 cut(s)	830, 927, 1252
PfeI	GAWTC	6 cut(s)	106, 410, 631, 760, 1127, 1248
Pfl23II	CGTACG	1 cut(s)	462
PfoI	TCCNGGA	1 cut(s)	979
PinAI	ACCGGT	1 cut(s)	1010
PkrI	GCNGC	1 cut(s)	654
PleI	GAGTC	3 cut(s)	332, 755, 1180
PmaCI	CACGTG	2 cut(s)	51, 996
PmlI	CACGTG	2 cut(s)	51, 996
PpsI	GAGTC	3 cut(s)	332, 755, 1180
Ppu21I	YACGTR	2 cut(s)	51, 996
Psp6I	CCWGG	4 cut(s)	91, 279, 307, 1177
PspCI	CACGTG	2 cut(s)	51, 996
PspFI	CCCAGC	1 cut(s)	1117
PspGI	CCWGG	4 cut(s)	91, 279, 307, 1177
PspLI	CGTACG	1 cut(s)	462
PspN4I	GGNNCC	5 cut(s)	170, 200, 340, 399, 1009
RsaI	GTAC	4 cut(s)	47, 170, 464, 1037
RsaNI	GTAC	4 cut(s)	46, 169, 463, 1036
RseI	CAYNNNNRTG	1 cut(s)	998
SalI	GTCGAC	1 cut(s)	434
SapI	GCTCTTC	1 cut(s)	624
SaqAI	TTAA	1 cut(s)	1101
SatI	GCNGC	1 cut(s)	653
Sau3AI	GATC	6 cut(s)	81, 381, 493, 964, 1002, 1167
SchI	GAGTC	3 cut(s)	333, 756, 1180
ScrFI	CCNGG	5 cut(s)	93, 281, 309, 981, 1179
SduI	GDGCHC	1 cut(s)	1022
SfaNI	GCATC	1 cut(s)	804
SmiMI	CAYNNNNRTG	1 cut(s)	998
SmlI	CTYRAG	1 cut(s)	374
SmoI	CTYRAG	1 cut(s)	374
SpeI	ACTAGT	1 cut(s)	754
Sse9I	AATT	4 cut(s)	559, 896, 927, 1252
SseBI	AGGCCT	1 cut(s)	609
SsiI	CCGC	2 cut(s)	102, 652
SspMI	CTAG	4 cut(s)	14, 404, 743, 755
StuI	AGGCCT	1 cut(s)	609
StyD4I	CCNGG	5 cut(s)	91, 279, 307, 979, 1177
TaaI	ACNGT	6 cut(s)	24, 164, 223, 693, 706, 1099
TaiI	ACGT	2 cut(s)	53, 998
TaqI	TCGA	3 cut(s)	213, 435, 472
TasI	AATT	4 cut(s)	559, 896, 927, 1252
TatI	WGTACW	2 cut(s)	45, 1035
TauI	GCSGC	1 cut(s)	655
TfiI	GAWTC	6 cut(s)	106, 410, 631, 760, 1127, 1248
Tru1I	TTAA	1 cut(s)	1101
Tru9I	TTAA	1 cut(s)	1101
TscAI	CASTG	1 cut(s)	709
TseFI	GTSAC	1 cut(s)	1183
Tsp45I	GTSAC	1 cut(s)	1183
TspDTI	ATGAA	4 cut(s)	17, 652, 920, 1140
TspGWI	ACGGA	3 cut(s)	225, 1101, 1107
TspRI	CASTG	1 cut(s)	709
VneI	GTGCAC	1 cut(s)	1018
XapI	RAATTY	1 cut(s)	927
XmiI	GTMKAC	1 cut(s)	435
XmnI	GAANNNNTTC	3 cut(s)	830, 927, 1252
XspI	CTAG	4 cut(s)	14, 404, 743, 755

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.