pycom08g06610

Lecithin-cholesterol acyltransferase-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr8
OG0015278
Physical Location & Seq
Reverse (-)
5152521 .. 5152928
408 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom08g06610.1

Sequence Viewer

Length: 291 bp
ATGCCAAACCCTAAAATATTTGGTCGGAACCGGCTTGTCATCACCCCAAATGCTACATATTCGGCCTATGATATTCCGCAGTTTCTCGACAACTTCGAGACAGCAGAGACCTTGTTCTATGGAAGCAACGGTTTCGATGAGCACTTGTTGGCACATGAACCTCTGTGGTCCGATACAAAAAATCAAACTCCGAAAACGATCAGAGTTCCCGGGGGGTCTCATACAGCAATACTCAAAGATGAAGATGCACTAGATGAAATAGCTAGGGAAATTTCTGGTATTAATTCCTAG

Protein Analysis

97

Amino Acids

10.73

Weight (kDa)

4.81

Isoelectric Point (pI)

27.84

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0015278)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G27480
fragaria_vesca FvH4_2g32820 FvH4_2g32820
prunus_persica Prupe.1G420700_v2.0.a1
pyrus_communis pycom08g06610
rosa_chinensis RchiOBHm_Chr6g0309881
rosa_laevigata RLG00000010527
rosa_multiflora Rmu_sc0006780.1_g000001
rosa_roxburghii Rroxscaffold_7G00159080
rosa_rugosa Rorug06G0375600
rosa_samantha Rh6AG489300 Rh6AG489400 Rh6BG498800 Rh6CG503600 Rh6DG489700
rosa_wichuraiana Rw6G042590

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 77
AcsI RAATTY 1 cut(s) 270
AluBI AGCT 1 cut(s) 263
AluI AGCT 1 cut(s) 263
Alw21I GWGCWC 1 cut(s) 144
Alw26I GTCTC 3 cut(s) 92, 101, 222
Ama87I CYCGRG 1 cut(s) 209
AoxI GGCC 1 cut(s) 63
ApoI RAATTY 1 cut(s) 270
AseI ATTAAT 1 cut(s) 282
AspS9I GGNCC 1 cut(s) 168
AsuC2I CCSGG 2 cut(s) 210, 211
AsuHPI GGTGA 1 cut(s) 34
AvaI CYCGRG 1 cut(s) 209
AvaII GGWCC 1 cut(s) 168
Bbv12I GWGCWC 1 cut(s) 144
BcgI CGANNNNNNTGC 2 cut(s) 115, 149
BcnI CCSGG 2 cut(s) 210, 211
BcoDI GTCTC 3 cut(s) 92, 101, 222
BfaI CTAG 3 cut(s) 251, 264, 289
Bme1390I CCNGG 2 cut(s) 210, 211
Bme18I GGWCC 1 cut(s) 168
BmeT110I CYCGRG 1 cut(s) 209
BmgT120I GGNCC 1 cut(s) 168
BmiI GGNNCC 1 cut(s) 29
BmrFI CCNGG 2 cut(s) 210, 211
BmsI GCATC 1 cut(s) 235
BpuMI CCSGG 2 cut(s) 210, 211
BsaI GGTCTC 2 cut(s) 101, 222
BsaJI CCNNGG 2 cut(s) 209, 210
Bse118I RCCGGY 1 cut(s) 30
BseDI CCNNGG 2 cut(s) 209, 210
BshFI GGCC 1 cut(s) 65
BsiHKAI GWGCWC 1 cut(s) 144
BsiHKCI CYCGRG 1 cut(s) 209
BsiSI CCGG 2 cut(s) 31, 210
BsmAI GTCTC 3 cut(s) 92, 101, 222
BsnI GGCC 1 cut(s) 65
Bso31I GGTCTC 2 cut(s) 101, 222
BsoBI CYCGRG 1 cut(s) 209
Bsp1286I GDGCHC 1 cut(s) 144
Bsp143I GATC 1 cut(s) 198
BspACI CCGC 1 cut(s) 77
BspANI GGCC 1 cut(s) 65
BspLI GGNNCC 1 cut(s) 29
BspTNI GGTCTC 2 cut(s) 101, 222
BsrFI RCCGGY 1 cut(s) 30
BssAI RCCGGY 1 cut(s) 30
BssECI CCNNGG 2 cut(s) 209, 210
BssMI GATC 1 cut(s) 198
Bst4CI ACNGT 1 cut(s) 131
BstKTI GATC 1 cut(s) 201
BstMAI GTCTC 3 cut(s) 92, 101, 222
BstMBI GATC 1 cut(s) 198
BstSCI CCNGG 2 cut(s) 208, 209
BsuRI GGCC 1 cut(s) 65
Cfr10I RCCGGY 1 cut(s) 30
Cfr13I GGNCC 1 cut(s) 168
Cfr9I CCCGGG 1 cut(s) 209
CviAII CATG 1 cut(s) 155
CviJI RGCY 3 cut(s) 34, 65, 263
CviKI_1 RGCY 3 cut(s) 34, 65, 263
DpnI GATC 1 cut(s) 200
DpnII GATC 1 cut(s) 198
Eco31I GGTCTC 2 cut(s) 101, 222
Eco47I GGWCC 1 cut(s) 168
Eco88I CYCGRG 1 cut(s) 209
FaeI CATG 1 cut(s) 158
FaiI YATR 5 cut(s) 58, 69, 120, 156, 222
FatI CATG 1 cut(s) 154
FspBI CTAG 3 cut(s) 251, 264, 289
HaeIII GGCC 1 cut(s) 65
HapII CCGG 2 cut(s) 31, 210
Hin1II CATG 1 cut(s) 158
HpaII CCGG 2 cut(s) 31, 210
HphI GGTGA 1 cut(s) 34
Hpy188I TCNGA 4 cut(s) 27, 172, 192, 203
Hpy188III TCNNGA 2 cut(s) 86, 97
HpyCH4III ACNGT 1 cut(s) 131
HpyCH4V TGCA 1 cut(s) 248
Hsp92II CATG 1 cut(s) 158
Kzo9I GATC 1 cut(s) 198
LpnPI CCDG 3 cut(s) 44, 223, 261
LweI GCATC 1 cut(s) 235
MaeI CTAG 3 cut(s) 251, 264, 289
MalI GATC 1 cut(s) 200
MboI GATC 1 cut(s) 198
MboII GAAGA 1 cut(s) 254
MhlI GDGCHC 1 cut(s) 144
MluCI AATT 2 cut(s) 270, 283
MmeI TCCRAC 1 cut(s) 5
MnlI CCTC 1 cut(s) 171
MseI TTAA 1 cut(s) 282
MspI CCGG 2 cut(s) 31, 210
MspR9I CCNGG 2 cut(s) 210, 211
NciI CCSGG 2 cut(s) 210, 211
NdeII GATC 1 cut(s) 198
NlaIII CATG 1 cut(s) 158
NlaIV GGNNCC 1 cut(s) 29
PcsI WCGNNNNNNNCGW 1 cut(s) 93
PshBI ATTAAT 1 cut(s) 282
PspN4I GGNNCC 1 cut(s) 29
PspPI GGNCC 1 cut(s) 168
SaqAI TTAA 1 cut(s) 282
Sau3AI GATC 1 cut(s) 198
Sau96I GGNCC 1 cut(s) 168
ScrFI CCNGG 2 cut(s) 210, 211
SduI GDGCHC 1 cut(s) 144
SetI ASST 3 cut(s) 113, 163, 265
SfaNI GCATC 1 cut(s) 235
SinI GGWCC 1 cut(s) 168
SmaI CCCGGG 1 cut(s) 211
Sse9I AATT 2 cut(s) 270, 283
SsiI CCGC 1 cut(s) 77
SspI AATATT 1 cut(s) 18
SspMI CTAG 3 cut(s) 251, 264, 289
StyD4I CCNGG 2 cut(s) 208, 209
TaaI ACNGT 1 cut(s) 131
TaqI TCGA 3 cut(s) 87, 96, 135
TasI AATT 2 cut(s) 270, 283
Tru1I TTAA 1 cut(s) 282
Tru9I TTAA 1 cut(s) 282
TspDTI ATGAA 3 cut(s) 171, 255, 270
TspMI CCCGGG 1 cut(s) 209
VpaK11BI GGWCC 1 cut(s) 168
VspI ATTAAT 1 cut(s) 282
XapI RAATTY 1 cut(s) 270
XmaI CCCGGG 1 cut(s) 209
XspI CTAG 3 cut(s) 251, 264, 289
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.