RLG00000010527

Lecithin-cholesterol acyltransferase-like

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr3
Physical Location & Seq
Reverse (-)
2395740 .. 2397235
1496 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000010527

Sequence Viewer

Length: 1203 bp
ATGAAGAAGCAGCTAGGATTACTGGTTTCGATGGCTGTGATGATGTACACGTGCCAAGCAGTTAGCAACCTCCACCCTGTGATCCTAATACCTGGAAATGGCGGGAATCAGTTGGAAGCGAGACTAACCCCGATTACAAGCCCAGTAGTTTGGTATGCAACCGTTGGTACCCGATTGAGAGGAACAAGGAGGGATAAAGATGATTACCACAATGCCCCTGGGGTTGAAACCAGAGTCCCCCACTTCGGGTCCATTCAGTCCCTTCTGTTCCTTGACCCCAATCTCAAGAAGATCACAACATACATGGCACCCCTAGTGGAATCATTGGAGAATATTGGCTATGTCGATGGCAAAACCATGTTCGGAGCTCCGTACGATTTTCGATATGGTTTAGCACCTAAAGACCACCAATCCCATGTTGGTTCCAAGTTCCTGAATGACCTAAAAGACTTGGTCGAAAAGGCCAGTAATTCTAATGGAGGAAAGCCGGTAATACTTGTCTCGCACAGCTTAGGAGGCCTCTTTGCTCTCCAACTTCTGAATCGAAACAAGCCCTCATGGCGCCAAAGGTTCATCAAACACTTCGTTGCACTCTCAGCACCGTGGGGTGGGACTGTGGACGAAATGCTCACCTTTGCTTCAGGGAACACACTAGGAGTGCCACTGGTGAATCCATTGCTCGTAAGAGAAGAGCAGAGGAGCTCAGAAAGCAACTTATGGCTAATGCCTAATCCTAGATTATTCAGGAGCAAAAAGCCAGTAGTGATCACCCCAGATGCTACATATTCAGCTCATAACATTCCCCAATTCCTCAATGACATTGGATTTCCCGAAGGAATTCATCCCTTCAAAACGCGCATTTTGGTCTTGATGGATCAGCTTGAAGCTCCTGGGGTGCCTCTTACTTGTGTTATTGGGACCGGTGTGAGGACAGCAGAGACTTTGTTCTATGACAAAAGAGGCTTTGATGAGCAACCGGAGATTGTTTACGGGGATGGAGATGGAACTGTGAACATGTTGAGCTTGTTAGGACATGAATCACTGTGGTCCAATTCGGAAAATCAAACCCTGAAAACGATTAGAGTTCCTGGGATGACTCATACCGAGATACTCAAAGATGATGGTGCACTTGGTGAAGTGGTTAGAGAAATCTCTGGAATTAATTCTCAGTTCATGTTTGTTGAGAATGCAAATGTGCAATGA

Protein Analysis

401

Amino Acids

44.25

Weight (kDa)

6.84

Isoelectric Point (pI)

39.8

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LCAT PF02450 70 - 273 3.8e-37 Lecithin:cholesterol acyltransferase
Hydrolase_4 PF12146 142 - 192 5.6e-07 Serine aminopeptidase, S33
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Orthologous Genes (Group: OG0015278)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G27480
fragaria_vesca FvH4_2g32820 FvH4_2g32820
prunus_persica Prupe.1G420700_v2.0.a1
pyrus_communis pycom08g06610
rosa_chinensis RchiOBHm_Chr6g0309881
rosa_laevigata RLG00000010527
rosa_multiflora Rmu_sc0006780.1_g000001
rosa_roxburghii Rroxscaffold_7G00159080
rosa_rugosa Rorug06G0375600
rosa_samantha Rh6AG489300 Rh6AG489400 Rh6BG498800 Rh6CG503600 Rh6DG489700
rosa_wichuraiana Rw6G042590

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 167
AccB1I GGYRCC 4 cut(s) 167, 307, 561, 895
AccII CGCG 1 cut(s) 856
AciI CCGC 1 cut(s) 102
AclWI GGATC 2 cut(s) 76, 882
AcsI RAATTY 1 cut(s) 837
AcuI CTGAAG 1 cut(s) 624
AcvI CACGTG 1 cut(s) 51
AcyI GRCGYC 1 cut(s) 562
AdeI CACNNNGTG 2 cut(s) 79, 1133
AfaI GTAC 3 cut(s) 47, 169, 374
AfiI CCNNNNNNNGG 5 cut(s) 98, 245, 246, 608, 927
AflIII ACRYGT 2 cut(s) 48, 1014
AgeI ACCGGT 1 cut(s) 920
AgsI TTSAA 3 cut(s) 227, 850, 884
AjnI CCWGG 4 cut(s) 91, 217, 889, 1087
AluBI AGCT 8 cut(s) 13, 368, 510, 702, 791, 880, 887, 1023
AluI AGCT 8 cut(s) 13, 368, 510, 702, 791, 880, 887, 1023
Alw21I GWGCWC 3 cut(s) 370, 704, 1129
Alw26I GTCTC 3 cut(s) 115, 505, 932
Alw44I GTGCAC 1 cut(s) 1125
AlwI GGATC 2 cut(s) 76, 882
AoxI GGCC 2 cut(s) 462, 517
ApaLI GTGCAC 1 cut(s) 1125
ApeKI GCWGC 1 cut(s) 10
ApoI RAATTY 1 cut(s) 837
AseI ATTAAT 1 cut(s) 1161
AsiGI ACCGGT 1 cut(s) 920
Asp700I GAANNNNTTC 2 cut(s) 837, 1162
Asp718I GGTACC 1 cut(s) 167
AspLEI GCGC 2 cut(s) 564, 858
AspS9I GGNCC 3 cut(s) 249, 918, 1047
AsuHPI GGTGA 4 cut(s) 622, 679, 760, 1145
AvaII GGWCC 3 cut(s) 249, 918, 1047
BaeGI GKGCMC 1 cut(s) 1129
BanI GGYRCC 4 cut(s) 167, 307, 561, 895
BanII GRGCYC 2 cut(s) 370, 704
BbrPI CACGTG 1 cut(s) 51
Bbv12I GWGCWC 3 cut(s) 370, 704, 1129
BbvI GCAGC 1 cut(s) 22
BccI CCATC 6 cut(s) 25, 341, 865, 989, 995, 1115
BciT130I CCWGG 4 cut(s) 93, 219, 891, 1089
BclI TGATCA 1 cut(s) 765
BcoDI GTCTC 3 cut(s) 115, 505, 932
BfaI CTAG 4 cut(s) 14, 314, 653, 735
BfoI RGCGCY 1 cut(s) 565
BglI GCCNNNNNGGC 1 cut(s) 559
BisI GCNGC 1 cut(s) 11
BlsI GCNGC 1 cut(s) 12
Bme1390I CCNGG 4 cut(s) 93, 219, 891, 1089
Bme18I GGWCC 3 cut(s) 249, 918, 1047
BmgT120I GGNCC 3 cut(s) 249, 918, 1047
BmiI GGNNCC 7 cut(s) 169, 250, 309, 424, 563, 897, 919
BmrFI CCNGG 4 cut(s) 93, 219, 891, 1089
BmrI ACTGGG 1 cut(s) 137
BmsI GCATC 1 cut(s) 766
BmuI ACTGGG 1 cut(s) 137
Bpu10I CCTNAGC 1 cut(s) 511
BpuEI CTTGAG 1 cut(s) 269
BsaAI YACGTR 1 cut(s) 51
BsaHI GRCGYC 1 cut(s) 562
BsaJI CCNNGG 5 cut(s) 217, 218, 602, 890, 1088
BsaWI WCCGGW 2 cut(s) 920, 976
Bsc4I CCNNNNNNNGG 5 cut(s) 98, 245, 246, 608, 927
Bse118I RCCGGY 2 cut(s) 487, 920
Bse1I ACTGG 5 cut(s) 27, 143, 465, 669, 758
Bse3DI GCAATG 1 cut(s) 674
BseBI CCWGG 4 cut(s) 93, 219, 891, 1089
BseDI CCNNGG 5 cut(s) 217, 218, 602, 890, 1088
BseGI GGATG 3 cut(s) 841, 1000, 1098
BseLI CCNNNNNNNGG 5 cut(s) 98, 245, 246, 608, 927
BseMI GCAATG 1 cut(s) 674
BseMII CTCAG 3 cut(s) 609, 717, 1181
BseNI ACTGG 5 cut(s) 27, 143, 465, 669, 758
BseRI GAGGAG 1 cut(s) 712
BseSI GKGCMC 1 cut(s) 1129
BseXI GCAGC 1 cut(s) 22
Bsh1236I CGCG 1 cut(s) 856
BshFI GGCC 2 cut(s) 464, 519
BshNI GGYRCC 4 cut(s) 167, 307, 561, 895
BshTI ACCGGT 1 cut(s) 920
BsiHKAI GWGCWC 3 cut(s) 370, 704, 1129
BsiSI CCGG 3 cut(s) 488, 921, 977
BsiWI CGTACG 1 cut(s) 372
BslFI GGGAC 4 cut(s) 221, 244, 625, 931
BslI CCNNNNNNNGG 5 cut(s) 98, 245, 246, 608, 927
BsmAI GTCTC 3 cut(s) 115, 505, 932
BsmFI GGGAC 4 cut(s) 221, 244, 625, 931
BsmI GAATGC 1 cut(s) 1192
BsnI GGCC 2 cut(s) 464, 519
Bsp1286I GDGCHC 3 cut(s) 370, 704, 1129
Bsp1407I TGTACA 1 cut(s) 45
Bsp143I GATC 4 cut(s) 81, 291, 765, 874
BspACI CCGC 1 cut(s) 102
BspANI GGCC 2 cut(s) 464, 519
BspCNI CTCAG 3 cut(s) 608, 716, 1180
BspFNI CGCG 1 cut(s) 856
BspLI GGNNCC 7 cut(s) 169, 250, 309, 424, 563, 897, 919
BspPI GGATC 2 cut(s) 76, 882
BspQI GCTCTTC 1 cut(s) 684
BspT107I GGYRCC 4 cut(s) 167, 307, 561, 895
BsrDI GCAATG 1 cut(s) 674
BsrFI RCCGGY 2 cut(s) 487, 920
BsrGI TGTACA 1 cut(s) 45
BsrI ACTGG 5 cut(s) 27, 143, 465, 669, 758
BssAI RCCGGY 2 cut(s) 487, 920
BssECI CCNNGG 5 cut(s) 217, 218, 602, 890, 1088
BssMI GATC 4 cut(s) 81, 291, 765, 874
BssNI GRCGYC 1 cut(s) 562
Bst2UI CCWGG 4 cut(s) 93, 219, 891, 1089
Bst4CI ACNGT 5 cut(s) 163, 603, 616, 1009, 1044
Bst6I CTCTTC 1 cut(s) 684
BstACI GRCGYC 1 cut(s) 562
BstAUI TGTACA 1 cut(s) 45
BstBAI YACGTR 1 cut(s) 51
BstDEI CTNAG 4 cut(s) 511, 595, 703, 1167
BstDSI CCRYGG 1 cut(s) 602
BstF5I GGATG 3 cut(s) 841, 1000, 1098
BstFNI CGCG 1 cut(s) 856
BstH2I RGCGCY 1 cut(s) 565
BstHHI GCGC 2 cut(s) 564, 858
BstKTI GATC 4 cut(s) 84, 294, 768, 877
BstMAI GTCTC 3 cut(s) 115, 505, 932
BstMBI GATC 4 cut(s) 81, 291, 765, 874
BstMWI GCNNNNNNNGC 4 cut(s) 516, 559, 596, 708
BstNI CCWGG 4 cut(s) 93, 219, 891, 1089
BstNSI RCATGY 1 cut(s) 1018
BstSCI CCNGG 4 cut(s) 91, 217, 889, 1087
BstSLI GKGCMC 1 cut(s) 1129
BstUI CGCG 1 cut(s) 856
BstV1I GCAGC 1 cut(s) 22
BstXI CCANNNNNNTGG 1 cut(s) 150
BsuRI GGCC 2 cut(s) 464, 519
BtgI CCRYGG 1 cut(s) 602
BtsCI GGATG 3 cut(s) 841, 1000, 1098
BtsIMutI CAGTG 2 cut(s) 662, 1040
CfoI GCGC 2 cut(s) 564, 858
Cfr10I RCCGGY 2 cut(s) 487, 920
Cfr13I GGNCC 3 cut(s) 249, 918, 1047
Csp6I GTAC 3 cut(s) 46, 168, 373
CspAI ACCGGT 1 cut(s) 920
CviAII CATG 7 cut(s) 304, 358, 416, 558, 1015, 1034, 1174
CviQI GTAC 3 cut(s) 46, 168, 373
DdeI CTNAG 4 cut(s) 511, 595, 703, 1167
DinI GGCGCC 1 cut(s) 563
DpnI GATC 4 cut(s) 83, 293, 767, 876
DpnII GATC 4 cut(s) 81, 291, 765, 874
DraIII CACNNNGTG 2 cut(s) 79, 1133
Eam1104I CTCTTC 1 cut(s) 684
EarI CTCTTC 1 cut(s) 684
Ecl136II GAGCTC 2 cut(s) 368, 702
Eco147I AGGCCT 1 cut(s) 519
Eco24I GRGCYC 2 cut(s) 370, 704
Eco47I GGWCC 3 cut(s) 249, 918, 1047
Eco53kI GAGCTC 2 cut(s) 368, 702
Eco57I CTGAAG 1 cut(s) 624
Eco72I CACGTG 1 cut(s) 51
EcoICRI GAGCTC 2 cut(s) 368, 702
EcoRI GAATTC 1 cut(s) 837
EcoRII CCWGG 4 cut(s) 91, 217, 889, 1087
EcoT38I GRGCYC 2 cut(s) 370, 704
EgeI GGCGCC 1 cut(s) 563
EheI GGCGCC 1 cut(s) 563
FaeI CATG 7 cut(s) 307, 361, 419, 561, 1018, 1037, 1177
FaqI GGGAC 4 cut(s) 221, 244, 625, 931
FatI CATG 7 cut(s) 303, 357, 415, 557, 1014, 1033, 1173
FauI CCCGC 1 cut(s) 95
FbaI TGATCA 1 cut(s) 765
Fnu4HI GCNGC 1 cut(s) 11
FokI GGATG 3 cut(s) 828, 1007, 1105
FriOI GRGCYC 2 cut(s) 370, 704
Fsp4HI GCNGC 1 cut(s) 11
FspBI CTAG 4 cut(s) 14, 314, 653, 735
GlaI GCGC 2 cut(s) 563, 857
GluI GCNGC 1 cut(s) 11
HaeII RGCGCY 1 cut(s) 565
HaeIII GGCC 2 cut(s) 464, 519
HapII CCGG 3 cut(s) 488, 921, 977
HhaI GCGC 2 cut(s) 564, 858
Hin1I GRCGYC 1 cut(s) 562
Hin1II CATG 7 cut(s) 307, 361, 419, 561, 1018, 1037, 1177
Hin6I GCGC 2 cut(s) 562, 856
HinP1I GCGC 2 cut(s) 562, 856
HinfI GANTC 7 cut(s) 106, 234, 320, 541, 670, 1037, 1096
HpaII CCGG 3 cut(s) 488, 921, 977
HphI GGTGA 4 cut(s) 622, 679, 760, 1145
Hpy166II GTNNAC 5 cut(s) 48, 619, 988, 1012, 1127
Hpy188I TCNGA 4 cut(s) 365, 540, 706, 1057
Hpy188III TCNNGA 6 cut(s) 286, 433, 745, 830, 868, 1155
Hpy8I GTNNAC 5 cut(s) 48, 619, 988, 1012, 1127
HpyAV CCTTC 3 cut(s) 272, 827, 856
HpyCH4III ACNGT 5 cut(s) 163, 603, 616, 1009, 1044
HpyCH4IV ACGT 1 cut(s) 50
HpyCH4V TGCA 5 cut(s) 158, 590, 1127, 1190, 1198
HpyF10VI GCNNNNNNNGC 4 cut(s) 516, 559, 596, 708
HpyF3I CTNAG 4 cut(s) 511, 595, 703, 1167
HpySE526I ACGT 1 cut(s) 50
Hsp92I GRCGYC 1 cut(s) 562
Hsp92II CATG 7 cut(s) 307, 361, 419, 561, 1018, 1037, 1177
HspAI GCGC 2 cut(s) 562, 856
KasI GGCGCC 1 cut(s) 561
KpnI GGTACC 1 cut(s) 171
Ksp22I TGATCA 1 cut(s) 765
Kzo9I GATC 4 cut(s) 81, 291, 765, 874
LguI GCTCTTC 1 cut(s) 684
LmnI GCTCC 5 cut(s) 365, 373, 699, 747, 892
Lsp1109I GCAGC 1 cut(s) 22
LweI GCATC 1 cut(s) 766
MaeI CTAG 4 cut(s) 14, 314, 653, 735
MaeII ACGT 1 cut(s) 50
MalI GATC 4 cut(s) 83, 293, 767, 876
MboI GATC 4 cut(s) 81, 291, 765, 874
MboII GAAGA 3 cut(s) 16, 301, 701
MhlI GDGCHC 3 cut(s) 370, 704, 1129
MluCI AATT 6 cut(s) 469, 806, 837, 1051, 1158, 1162
Mly113I GGCGCC 1 cut(s) 562
MlyI GAGTC 2 cut(s) 243, 1090
MmeI TCCRAC 2 cut(s) 93, 556
MroXI GAANNNNTTC 2 cut(s) 837, 1162
MseI TTAA 1 cut(s) 1161
MspI CCGG 3 cut(s) 488, 921, 977
MspR9I CCNGG 4 cut(s) 93, 219, 891, 1089
Mva1269I GAATGC 1 cut(s) 1192
MvaI CCWGG 4 cut(s) 93, 219, 891, 1089
MvnI CGCG 1 cut(s) 856
MwoI GCNNNNNNNGC 4 cut(s) 516, 559, 596, 708
NarI GGCGCC 1 cut(s) 562
NdeII GATC 4 cut(s) 81, 291, 765, 874
NlaIII CATG 7 cut(s) 307, 361, 419, 561, 1018, 1037, 1177
NlaIV GGNNCC 7 cut(s) 169, 250, 309, 424, 563, 897, 919
NspI RCATGY 1 cut(s) 1018
PasI CCCWGGG 1 cut(s) 218
PceI AGGCCT 1 cut(s) 519
PciI ACATGT 1 cut(s) 1014
PciSI GCTCTTC 1 cut(s) 684
PctI GAATGC 1 cut(s) 1192
PdmI GAANNNNTTC 2 cut(s) 837, 1162
PfeI GAWTC 5 cut(s) 106, 320, 541, 670, 1037
Pfl23II CGTACG 1 cut(s) 372
PflFI GACNNNGTC 1 cut(s) 452
PinAI ACCGGT 1 cut(s) 920
PkrI GCNGC 1 cut(s) 12
PleI GAGTC 2 cut(s) 242, 1090
PluTI GGCGCC 1 cut(s) 565
PmaCI CACGTG 1 cut(s) 51
PmlI CACGTG 1 cut(s) 51
PpsI GAGTC 2 cut(s) 242, 1090
Ppu21I YACGTR 1 cut(s) 51
PscI ACATGT 1 cut(s) 1014
PshBI ATTAAT 1 cut(s) 1161
Psp124BI GAGCTC 2 cut(s) 370, 704
Psp6I CCWGG 4 cut(s) 91, 217, 889, 1087
PspCI CACGTG 1 cut(s) 51
PspGI CCWGG 4 cut(s) 91, 217, 889, 1087
PspLI CGTACG 1 cut(s) 372
PspN4I GGNNCC 7 cut(s) 169, 250, 309, 424, 563, 897, 919
PspPI GGNCC 3 cut(s) 249, 918, 1047
PsyI GACNNNGTC 1 cut(s) 452
RsaI GTAC 3 cut(s) 47, 169, 374
RsaNI GTAC 3 cut(s) 46, 168, 373
SacI GAGCTC 2 cut(s) 370, 704
SapI GCTCTTC 1 cut(s) 684
SaqAI TTAA 1 cut(s) 1161
SatI GCNGC 1 cut(s) 11
Sau3AI GATC 4 cut(s) 81, 291, 765, 874
Sau96I GGNCC 3 cut(s) 249, 918, 1047
SchI GAGTC 2 cut(s) 243, 1090
ScrFI CCNGG 4 cut(s) 93, 219, 891, 1089
SduI GDGCHC 3 cut(s) 370, 704, 1129
SfaNI GCATC 1 cut(s) 766
SfoI GGCGCC 1 cut(s) 563
SinI GGWCC 3 cut(s) 249, 918, 1047
SmlI CTYRAG 1 cut(s) 284
SmoI CTYRAG 1 cut(s) 284
Sse9I AATT 6 cut(s) 469, 806, 837, 1051, 1158, 1162
SseBI AGGCCT 1 cut(s) 519
SsiI CCGC 1 cut(s) 102
SspDI GGCGCC 1 cut(s) 561
SspI AATATT 1 cut(s) 334
SspMI CTAG 4 cut(s) 14, 314, 653, 735
SstI GAGCTC 2 cut(s) 370, 704
StuI AGGCCT 1 cut(s) 519
StyD4I CCNGG 4 cut(s) 91, 217, 889, 1087
TaaI ACNGT 5 cut(s) 163, 603, 616, 1009, 1044
TaiI ACGT 1 cut(s) 53
TaqI TCGA 5 cut(s) 29, 345, 382, 456, 544
TasI AATT 6 cut(s) 469, 806, 837, 1051, 1158, 1162
TatI WGTACW 1 cut(s) 45
TfiI GAWTC 5 cut(s) 106, 320, 541, 670, 1037
Tru1I TTAA 1 cut(s) 1161
Tru9I TTAA 1 cut(s) 1161
TscAI CASTG 2 cut(s) 669, 1047
TseI GCWGC 1 cut(s) 10
TspDTI ATGAA 5 cut(s) 17, 562, 830, 1050, 1162
TspGWI ACGGA 1 cut(s) 360
TspRI CASTG 2 cut(s) 669, 1047
Tth111I GACNNNGTC 1 cut(s) 452
VneI GTGCAC 1 cut(s) 1125
VpaK11BI GGWCC 3 cut(s) 249, 918, 1047
VspI ATTAAT 1 cut(s) 1161
XapI RAATTY 1 cut(s) 837
XceI RCATGY 1 cut(s) 1018
XcmI CCANNNNNNNNNTGG 2 cut(s) 215, 416
XmnI GAANNNNTTC 2 cut(s) 837, 1162
XspI CTAG 4 cut(s) 14, 314, 653, 735
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.