Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0006780.1

Orthogroup ID

OG0015278

Physical Location & Seq

Genomic Coordinates Forward (+)

3166 .. 4616

Gene Structure 1451 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0006780.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1263 bp

atggctgtgatgatgtgcacgtgccaagcagtcagcaacctccaccctgtgatcctaatacctggaaatggcgggaatcagttggaagcgagactaacccccgattacaagcccagtagtttggtatgcaaccgttggtacccgattgagaggaacaaggagggttggttcaggctgtggttcgacccgactgttctgttggctccgttcactacttgctttgctcagaggatgacgctctattacgaccaggacaaagatgattaccacaatgcccctggggttgaaaccagagtcccccacttcgggtccattcagtcccttctgttccttgaccccaatctcaagaagatcacaacatacatggcacccctagtggaatcattggagaatattggctatgtcgatggcaaaaccatgttcggagctccatacgattttcgatatggtttagcacctaaagaccacccatcccgtgttggttctaagttcctgaaagacctaaaagacttggtcgaaaaggccggcaattctaatggaggaaagccggtgatactcgtctcgcacagcttaggaggcctctttgctctccaacttctgaatcgaaacaagccctcatggcgccaaaagttcatcaaacacgttgttgcactctcagcaccgtggggtgggactgtggacgaaatgctcacctttgcttcagggaacacactaggagtgccacttgtgaatccattgctcgtaagagaagagcagaggagctccgaaagcaacttatggctaatgcctaatcctagattattcaggagcaaaaaaccaatagtgatcaccccagatgctacatattcagctcataacattccccaattcctcaatgacattggatttcccgaaggaattcatcccttcaaaacgcgcattttggtcttgatggatcagcttgaagctcctggggttcctcttacttgtgttattgggaccggtgtgaggacagcagagactttgttctatgacaaaagaggctttgatgagcaaccggagattgtttacggggatggagatggaactgtgaacatgttgagcttgttaggacatgaatcactgtggtccaatgcggaaaatcaaactctgaaaacgattagagttcctggggtgactcataccgagatactcaaagatgatggtgcacttggtgaagtggttagagaaatctctggaattaattctcagttcatgtttgttgagaatgtaaatgtgcaatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0016020 GO:0031090 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0098588 GO:0098805

KEGG Pathways

Metabolic & Signaling

ko00564 ko04142 map00564 map04142

Pfam Domains

Protein Families

LCAT

Protein Analysis

420

Amino Acids

46.86

Weight (kDa)

6.22

Isoelectric Point (pI)

40.98

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0015278)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G27480
fragaria_vesca	FvH4_2g32820 FvH4_2g32820
prunus_persica	Prupe.1G420700_v2.0.a1
pyrus_communis	pycom08g06610
rosa_chinensis	RchiOBHm_Chr6g0309881
rosa_laevigata	RLG00000010527
rosa_multiflora	Rmu_sc0006780.1_g000001
rosa_roxburghii	Rroxscaffold_7G00159080
rosa_rugosa	Rorug06G0375600
rosa_samantha	Rh6AG489300 Rh6AG489400 Rh6BG498800 Rh6CG503600 Rh6DG489700
rosa_wichuraiana	Rw6G042590

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	138
AccB1I	GGYRCC	3 cut(s)	138, 367, 621
AccII	CGCG	1 cut(s)	916
AciI	CCGC	2 cut(s)	72, 1115
AclWI	GGATC	2 cut(s)	46, 942
AcsI	RAATTY	1 cut(s)	897
AcuI	CTGAAG	1 cut(s)	684
AcvI	CACGTG	1 cut(s)	21
AcyI	GRCGYC	1 cut(s)	622
AdeI	CACNNNGTG	2 cut(s)	49, 1193
AfaI	GTAC	1 cut(s)	140
AfiI	CCNNNNNNNGG	5 cut(s)	68, 305, 306, 668, 987
AflIII	ACRYGT	2 cut(s)	640, 1074
AgeI	ACCGGT	1 cut(s)	980
AgsI	TTSAA	3 cut(s)	287, 910, 944
AjnI	CCWGG	5 cut(s)	61, 249, 277, 949, 1147
AloI	GAACNNNNNNTCC	2 cut(s)	152, 184
AluBI	AGCT	7 cut(s)	428, 570, 762, 851, 940, 947, 1083
AluI	AGCT	7 cut(s)	428, 570, 762, 851, 940, 947, 1083
Alw21I	GWGCWC	4 cut(s)	20, 430, 764, 1189
Alw26I	GTCTC	3 cut(s)	85, 565, 992
Alw44I	GTGCAC	2 cut(s)	16, 1185
AlwI	GGATC	2 cut(s)	46, 942
AoxI	GGCC	2 cut(s)	522, 577
ApaLI	GTGCAC	2 cut(s)	16, 1185
ApoI	RAATTY	1 cut(s)	897
AseI	ATTAAT	1 cut(s)	1221
AsiGI	ACCGGT	1 cut(s)	980
Asp700I	GAANNNNTTC	2 cut(s)	897, 1222
Asp718I	GGTACC	1 cut(s)	138
AspLEI	GCGC	2 cut(s)	624, 918
AspS9I	GGNCC	3 cut(s)	309, 978, 1107
AsuHPI	GGTGA	5 cut(s)	562, 682, 820, 1165, 1205
AvaII	GGWCC	3 cut(s)	309, 978, 1107
BaeGI	GKGCMC	2 cut(s)	20, 1189
BanI	GGYRCC	3 cut(s)	138, 367, 621
BanII	GRGCYC	2 cut(s)	430, 764
BbrPI	CACGTG	1 cut(s)	21
Bbv12I	GWGCWC	4 cut(s)	20, 430, 764, 1189
BccI	CCATC	6 cut(s)	401, 478, 925, 1049, 1055, 1175
BciT130I	CCWGG	5 cut(s)	63, 251, 279, 951, 1149
BclI	TGATCA	1 cut(s)	825
BcoDI	GTCTC	3 cut(s)	85, 565, 992
BfaI	CTAG	3 cut(s)	374, 713, 795
BfoI	RGCGCY	1 cut(s)	625
BglI	GCCNNNNNGGC	1 cut(s)	619
Bme1390I	CCNGG	5 cut(s)	63, 251, 279, 951, 1149
Bme18I	GGWCC	3 cut(s)	309, 978, 1107
BmgT120I	GGNCC	3 cut(s)	309, 978, 1107
BmiI	GGNNCC	7 cut(s)	140, 204, 310, 369, 623, 957, 979
BmrFI	CCNGG	5 cut(s)	63, 251, 279, 951, 1149
BmrI	ACTGGG	1 cut(s)	108
BmsI	GCATC	1 cut(s)	826
BmuI	ACTGGG	1 cut(s)	108
Bpu10I	CCTNAGC	1 cut(s)	571
BpuEI	CTTGAG	1 cut(s)	329
BsaAI	YACGTR	1 cut(s)	21
BsaHI	GRCGYC	1 cut(s)	622
BsaJI	CCNNGG	5 cut(s)	277, 278, 662, 950, 1148
BsaWI	WCCGGW	2 cut(s)	980, 1036
BsaXI	ACNNNNNCTCC	2 cut(s)	152, 182
Bsc4I	CCNNNNNNNGG	5 cut(s)	68, 305, 306, 668, 987
Bse118I	RCCGGY	3 cut(s)	524, 547, 980
Bse1I	ACTGG	1 cut(s)	114
Bse3DI	GCAATG	1 cut(s)	734
BseBI	CCWGG	5 cut(s)	63, 251, 279, 951, 1149
BseDI	CCNNGG	5 cut(s)	277, 278, 662, 950, 1148
BseGI	GGATG	4 cut(s)	237, 470, 901, 1060
BseLI	CCNNNNNNNGG	5 cut(s)	68, 305, 306, 668, 987
BseMI	GCAATG	1 cut(s)	734
BseMII	CTCAG	3 cut(s)	239, 669, 1241
BseNI	ACTGG	1 cut(s)	114
BseRI	GAGGAG	1 cut(s)	772
BseSI	GKGCMC	2 cut(s)	20, 1189
Bsh1236I	CGCG	1 cut(s)	916
BshFI	GGCC	2 cut(s)	524, 579
BshNI	GGYRCC	3 cut(s)	138, 367, 621
BshTI	ACCGGT	1 cut(s)	980
BsiHKAI	GWGCWC	4 cut(s)	20, 430, 764, 1189
BsiSI	CCGG	4 cut(s)	525, 548, 981, 1037
BslFI	GGGAC	4 cut(s)	281, 304, 685, 991
BslI	CCNNNNNNNGG	5 cut(s)	68, 305, 306, 668, 987
BsmAI	GTCTC	3 cut(s)	85, 565, 992
BsmBI	CGTCTC	1 cut(s)	565
BsmFI	GGGAC	4 cut(s)	281, 304, 685, 991
BsnI	GGCC	2 cut(s)	524, 579
Bsp1286I	GDGCHC	4 cut(s)	20, 430, 764, 1189
Bsp143I	GATC	4 cut(s)	51, 351, 825, 934
BspACI	CCGC	2 cut(s)	72, 1115
BspANI	GGCC	2 cut(s)	524, 579
BspCNI	CTCAG	3 cut(s)	238, 668, 1240
BspFNI	CGCG	1 cut(s)	916
BspLI	GGNNCC	7 cut(s)	140, 204, 310, 369, 623, 957, 979
BspPI	GGATC	2 cut(s)	46, 942
BspQI	GCTCTTC	1 cut(s)	744
BspT107I	GGYRCC	3 cut(s)	138, 367, 621
BsrDI	GCAATG	1 cut(s)	734
BsrFI	RCCGGY	3 cut(s)	524, 547, 980
BsrI	ACTGG	1 cut(s)	114
BssAI	RCCGGY	3 cut(s)	524, 547, 980
BssECI	CCNNGG	5 cut(s)	277, 278, 662, 950, 1148
BssMI	GATC	4 cut(s)	51, 351, 825, 934
BssNI	GRCGYC	1 cut(s)	622
Bst2UI	CCWGG	5 cut(s)	63, 251, 279, 951, 1149
Bst4CI	ACNGT	6 cut(s)	134, 193, 663, 676, 1069, 1104
Bst6I	CTCTTC	1 cut(s)	744
BstACI	GRCGYC	1 cut(s)	622
BstBAI	YACGTR	1 cut(s)	21
BstC8I	GCNNGC	1 cut(s)	526
BstDEI	CTNAG	5 cut(s)	225, 486, 571, 655, 1227
BstDSI	CCRYGG	1 cut(s)	662
BstF5I	GGATG	4 cut(s)	237, 470, 901, 1060
BstFNI	CGCG	1 cut(s)	916
BstH2I	RGCGCY	1 cut(s)	625
BstHHI	GCGC	2 cut(s)	624, 918
BstKTI	GATC	4 cut(s)	54, 354, 828, 937
BstMAI	GTCTC	3 cut(s)	85, 565, 992
BstMBI	GATC	4 cut(s)	51, 351, 825, 934
BstMWI	GCNNNNNNNGC	4 cut(s)	576, 619, 656, 768
BstNI	CCWGG	5 cut(s)	63, 251, 279, 951, 1149
BstNSI	RCATGY	1 cut(s)	1078
BstSCI	CCNGG	5 cut(s)	61, 249, 277, 949, 1147
BstSLI	GKGCMC	2 cut(s)	20, 1189
BstUI	CGCG	1 cut(s)	916
BstXI	CCANNNNNNTGG	1 cut(s)	121
BsuRI	GGCC	2 cut(s)	524, 579
BtgI	CCRYGG	1 cut(s)	662
BtsCI	GGATG	4 cut(s)	237, 470, 901, 1060
BtsIMutI	CAGTG	1 cut(s)	1100
Cac8I	GCNNGC	1 cut(s)	526
CfoI	GCGC	2 cut(s)	624, 918
Cfr10I	RCCGGY	3 cut(s)	524, 547, 980
Cfr13I	GGNCC	3 cut(s)	309, 978, 1107
CseI	GACGC	1 cut(s)	244
Csp6I	GTAC	1 cut(s)	139
CspAI	ACCGGT	1 cut(s)	980
CviAII	CATG	6 cut(s)	364, 418, 618, 1075, 1094, 1234
CviQI	GTAC	1 cut(s)	139
DdeI	CTNAG	5 cut(s)	225, 486, 571, 655, 1227
DinI	GGCGCC	1 cut(s)	623
DpnI	GATC	4 cut(s)	53, 353, 827, 936
DpnII	GATC	4 cut(s)	51, 351, 825, 934
DraIII	CACNNNGTG	2 cut(s)	49, 1193
Eam1104I	CTCTTC	1 cut(s)	744
EarI	CTCTTC	1 cut(s)	744
Ecl136II	GAGCTC	2 cut(s)	428, 762
Eco147I	AGGCCT	1 cut(s)	579
Eco24I	GRGCYC	2 cut(s)	430, 764
Eco47I	GGWCC	3 cut(s)	309, 978, 1107
Eco53kI	GAGCTC	2 cut(s)	428, 762
Eco57I	CTGAAG	1 cut(s)	684
Eco72I	CACGTG	1 cut(s)	21
EcoICRI	GAGCTC	2 cut(s)	428, 762
EcoRI	GAATTC	1 cut(s)	897
EcoRII	CCWGG	5 cut(s)	61, 249, 277, 949, 1147
EcoT38I	GRGCYC	2 cut(s)	430, 764
EgeI	GGCGCC	1 cut(s)	623
EheI	GGCGCC	1 cut(s)	623
Esp3I	CGTCTC	1 cut(s)	565
FaeI	CATG	6 cut(s)	367, 421, 621, 1078, 1097, 1237
FaqI	GGGAC	4 cut(s)	281, 304, 685, 991
FatI	CATG	6 cut(s)	363, 417, 617, 1074, 1093, 1233
FauI	CCCGC	1 cut(s)	65
FbaI	TGATCA	1 cut(s)	825
FokI	GGATG	4 cut(s)	244, 457, 888, 1067
FriOI	GRGCYC	2 cut(s)	430, 764
FspBI	CTAG	3 cut(s)	374, 713, 795
GlaI	GCGC	2 cut(s)	623, 917
HaeII	RGCGCY	1 cut(s)	625
HaeIII	GGCC	2 cut(s)	524, 579
HapII	CCGG	4 cut(s)	525, 548, 981, 1037
HgaI	GACGC	1 cut(s)	244
HhaI	GCGC	2 cut(s)	624, 918
Hin1I	GRCGYC	1 cut(s)	622
Hin1II	CATG	6 cut(s)	367, 421, 621, 1078, 1097, 1237
Hin6I	GCGC	2 cut(s)	622, 916
HinP1I	GCGC	2 cut(s)	622, 916
HinfI	GANTC	7 cut(s)	76, 294, 380, 601, 730, 1097, 1156
HpaII	CCGG	4 cut(s)	525, 548, 981, 1037
HphI	GGTGA	5 cut(s)	562, 682, 820, 1165, 1205
Hpy166II	GTNNAC	6 cut(s)	18, 210, 679, 1048, 1072, 1187
Hpy188I	TCNGA	5 cut(s)	228, 425, 600, 766, 1131
Hpy188III	TCNNGA	6 cut(s)	346, 493, 805, 890, 928, 1215
Hpy8I	GTNNAC	6 cut(s)	18, 210, 679, 1048, 1072, 1187
HpyAV	CCTTC	3 cut(s)	332, 887, 916
HpyCH4III	ACNGT	6 cut(s)	134, 193, 663, 676, 1069, 1104
HpyCH4IV	ACGT	2 cut(s)	20, 642
HpyCH4V	TGCA	5 cut(s)	18, 129, 650, 1187, 1258
HpyF10VI	GCNNNNNNNGC	4 cut(s)	576, 619, 656, 768
HpyF3I	CTNAG	5 cut(s)	225, 486, 571, 655, 1227
HpySE526I	ACGT	2 cut(s)	20, 642
Hsp92I	GRCGYC	1 cut(s)	622
Hsp92II	CATG	6 cut(s)	367, 421, 621, 1078, 1097, 1237
HspAI	GCGC	2 cut(s)	622, 916
KasI	GGCGCC	1 cut(s)	621
KpnI	GGTACC	1 cut(s)	142
KroI	GCCGGC	1 cut(s)	524
KroNI	GCCGGC	1 cut(s)	526
Ksp22I	TGATCA	1 cut(s)	825
Kzo9I	GATC	4 cut(s)	51, 351, 825, 934
LguI	GCTCTTC	1 cut(s)	744
LmnI	GCTCC	7 cut(s)	208, 425, 433, 759, 767, 807, 952
LweI	GCATC	1 cut(s)	826
MaeI	CTAG	3 cut(s)	374, 713, 795
MaeII	ACGT	2 cut(s)	20, 642
MaeIII	GTNAC	1 cut(s)	1153
MalI	GATC	4 cut(s)	53, 353, 827, 936
MboI	GATC	4 cut(s)	51, 351, 825, 934
MboII	GAAGA	2 cut(s)	361, 761
MhlI	GDGCHC	4 cut(s)	20, 430, 764, 1189
MluCI	AATT	5 cut(s)	529, 866, 897, 1218, 1222
Mly113I	GGCGCC	1 cut(s)	622
MlyI	GAGTC	2 cut(s)	303, 1150
MmeI	TCCRAC	2 cut(s)	63, 616
MroNI	GCCGGC	1 cut(s)	524
MroXI	GAANNNNTTC	2 cut(s)	897, 1222
MseI	TTAA	1 cut(s)	1221
MspI	CCGG	4 cut(s)	525, 548, 981, 1037
MspR9I	CCNGG	5 cut(s)	63, 251, 279, 951, 1149
MvaI	CCWGG	5 cut(s)	63, 251, 279, 951, 1149
MvnI	CGCG	1 cut(s)	916
MwoI	GCNNNNNNNGC	4 cut(s)	576, 619, 656, 768
NaeI	GCCGGC	1 cut(s)	526
NarI	GGCGCC	1 cut(s)	622
NdeII	GATC	4 cut(s)	51, 351, 825, 934
NgoMIV	GCCGGC	1 cut(s)	524
NlaIII	CATG	6 cut(s)	367, 421, 621, 1078, 1097, 1237
NlaIV	GGNNCC	7 cut(s)	140, 204, 310, 369, 623, 957, 979
NmuCI	GTSAC	1 cut(s)	1153
NspI	RCATGY	1 cut(s)	1078
PasI	CCCWGGG	1 cut(s)	278
PceI	AGGCCT	1 cut(s)	579
PciI	ACATGT	1 cut(s)	1074
PciSI	GCTCTTC	1 cut(s)	744
PdiI	GCCGGC	1 cut(s)	526
PdmI	GAANNNNTTC	2 cut(s)	897, 1222
PfeI	GAWTC	5 cut(s)	76, 380, 601, 730, 1097
PflFI	GACNNNGTC	1 cut(s)	512
PinAI	ACCGGT	1 cut(s)	980
PleI	GAGTC	2 cut(s)	302, 1150
PluTI	GGCGCC	1 cut(s)	625
PmaCI	CACGTG	1 cut(s)	21
PmlI	CACGTG	1 cut(s)	21
PpsI	GAGTC	2 cut(s)	302, 1150
Ppu21I	YACGTR	1 cut(s)	21
PscI	ACATGT	1 cut(s)	1074
PshBI	ATTAAT	1 cut(s)	1221
Psp124BI	GAGCTC	2 cut(s)	430, 764
Psp6I	CCWGG	5 cut(s)	61, 249, 277, 949, 1147
PspCI	CACGTG	1 cut(s)	21
PspGI	CCWGG	5 cut(s)	61, 249, 277, 949, 1147
PspN4I	GGNNCC	7 cut(s)	140, 204, 310, 369, 623, 957, 979
PspPI	GGNCC	3 cut(s)	309, 978, 1107
PsyI	GACNNNGTC	1 cut(s)	512
RsaI	GTAC	1 cut(s)	140
RsaNI	GTAC	1 cut(s)	139
SacI	GAGCTC	2 cut(s)	430, 764
SapI	GCTCTTC	1 cut(s)	744
SaqAI	TTAA	1 cut(s)	1221
Sau3AI	GATC	4 cut(s)	51, 351, 825, 934
Sau96I	GGNCC	3 cut(s)	309, 978, 1107
SchI	GAGTC	2 cut(s)	303, 1150
ScrFI	CCNGG	5 cut(s)	63, 251, 279, 951, 1149
SduI	GDGCHC	4 cut(s)	20, 430, 764, 1189
SfaNI	GCATC	1 cut(s)	826
SfoI	GGCGCC	1 cut(s)	623
SinI	GGWCC	3 cut(s)	309, 978, 1107
SmlI	CTYRAG	1 cut(s)	344
SmoI	CTYRAG	1 cut(s)	344
Sse9I	AATT	5 cut(s)	529, 866, 897, 1218, 1222
SseBI	AGGCCT	1 cut(s)	579
SsiI	CCGC	2 cut(s)	72, 1115
SspDI	GGCGCC	1 cut(s)	621
SspI	AATATT	1 cut(s)	394
SspMI	CTAG	3 cut(s)	374, 713, 795
SstI	GAGCTC	2 cut(s)	430, 764
StuI	AGGCCT	1 cut(s)	579
StyD4I	CCNGG	5 cut(s)	61, 249, 277, 949, 1147
TaaI	ACNGT	6 cut(s)	134, 193, 663, 676, 1069, 1104
TaiI	ACGT	2 cut(s)	23, 645
TaqI	TCGA	5 cut(s)	183, 405, 442, 516, 604
TasI	AATT	5 cut(s)	529, 866, 897, 1218, 1222
TfiI	GAWTC	5 cut(s)	76, 380, 601, 730, 1097
Tru1I	TTAA	1 cut(s)	1221
Tru9I	TTAA	1 cut(s)	1221
TscAI	CASTG	1 cut(s)	1107
TseFI	GTSAC	1 cut(s)	1153
Tsp45I	GTSAC	1 cut(s)	1153
TspDTI	ATGAA	4 cut(s)	622, 890, 1110, 1222
TspGWI	ACGGA	1 cut(s)	195
TspRI	CASTG	1 cut(s)	1107
Tth111I	GACNNNGTC	1 cut(s)	512
VneI	GTGCAC	2 cut(s)	16, 1185
VpaK11BI	GGWCC	3 cut(s)	309, 978, 1107
VspI	ATTAAT	1 cut(s)	1221
XapI	RAATTY	1 cut(s)	897
XceI	RCATGY	1 cut(s)	1078
XcmI	CCANNNNNNNNNTGG	1 cut(s)	275
XmnI	GAANNNNTTC	2 cut(s)	897, 1222
XspI	CTAG	3 cut(s)	374, 713, 795

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.