Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6A

Orthogroup ID

OG0015278

Physical Location & Seq

Genomic Coordinates Forward (+)

66632979 .. 66633658

Gene Structure 680 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6AG489300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 381 bp

ATGAAGAAGCAGCTAGGATTACTGGTTTCGATGGCTGTGATGATGTACACGTGCCAAGCAGTTAGCAACCTCCACCCTGTGATCCTAATACCTGGAAATGGCGGGAATCAGTTGGAAGCGAGACTAACCCCCGATTACAAGCCCAGTAGTTTGGTATGCAACCGTTGGTACCCGATTAAGAGGAACAAGGAGGGTTGGTTCAGGCTGTGGTTCGACCCTACTGTTCTGTTGGCTCCGTTCACTACTTGCTTTGCTCAGAGGATGACGCTCTATTACGACCAGGATAAAGATGATTACCACAATGCCCCTGGGGTTGAAACCAGAGTCCCCCACTTCGGGTCCATTCAGTCCCTTCTGTTCCTTGACCCCAATCTCAAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0016020 GO:0031090 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0098588 GO:0098805

KEGG Pathways

Metabolic & Signaling

ko00564 ko04142 map00564 map04142

Pfam Domains

Protein Families

LCAT

Protein Analysis

126

Amino Acids

14.49

Weight (kDa)

8.82

Isoelectric Point (pI)

44.04

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0015278)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G27480
fragaria_vesca	FvH4_2g32820 FvH4_2g32820
prunus_persica	Prupe.1G420700_v2.0.a1
pyrus_communis	pycom08g06610
rosa_chinensis	RchiOBHm_Chr6g0309881
rosa_laevigata	RLG00000010527
rosa_multiflora	Rmu_sc0006780.1_g000001
rosa_roxburghii	Rroxscaffold_7G00159080
rosa_rugosa	Rorug06G0375600
rosa_samantha	Rh6AG489300 Rh6AG489400 Rh6BG498800 Rh6CG503600 Rh6DG489700
rosa_wichuraiana	Rw6G042590

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	168
AccB1I	GGYRCC	1 cut(s)	168
AciI	CCGC	1 cut(s)	102
AclWI	GGATC	1 cut(s)	76
AcvI	CACGTG	1 cut(s)	51
AdeI	CACNNNGTG	1 cut(s)	79
AfaI	GTAC	2 cut(s)	47, 170
AfiI	CCNNNNNNNGG	3 cut(s)	98, 335, 336
AflIII	ACRYGT	1 cut(s)	48
AgsI	TTSAA	1 cut(s)	317
AjnI	CCWGG	3 cut(s)	91, 279, 307
AloI	GAACNNNNNNTCC	2 cut(s)	182, 214
AluBI	AGCT	1 cut(s)	13
AluI	AGCT	1 cut(s)	13
Alw26I	GTCTC	1 cut(s)	115
AlwI	GGATC	1 cut(s)	76
ApeKI	GCWGC	1 cut(s)	10
Asp718I	GGTACC	1 cut(s)	168
AspS9I	GGNCC	1 cut(s)	339
AvaII	GGWCC	1 cut(s)	339
BanI	GGYRCC	1 cut(s)	168
BbrPI	CACGTG	1 cut(s)	51
BbvI	GCAGC	1 cut(s)	22
BccI	CCATC	1 cut(s)	25
BciT130I	CCWGG	3 cut(s)	93, 281, 309
BcoDI	GTCTC	1 cut(s)	115
BfaI	CTAG	1 cut(s)	14
BisI	GCNGC	1 cut(s)	11
BlsI	GCNGC	1 cut(s)	12
Bme1390I	CCNGG	3 cut(s)	93, 281, 309
Bme18I	GGWCC	1 cut(s)	339
BmgT120I	GGNCC	1 cut(s)	339
BmiI	GGNNCC	3 cut(s)	170, 234, 340
BmrFI	CCNGG	3 cut(s)	93, 281, 309
BmrI	ACTGGG	1 cut(s)	138
BmuI	ACTGGG	1 cut(s)	138
BpuEI	CTTGAG	1 cut(s)	359
BsaAI	YACGTR	1 cut(s)	51
BsaJI	CCNNGG	2 cut(s)	307, 308
BsaXI	ACNNNNNCTCC	2 cut(s)	182, 212
Bsc4I	CCNNNNNNNGG	3 cut(s)	98, 335, 336
Bse1I	ACTGG	2 cut(s)	27, 144
BseBI	CCWGG	3 cut(s)	93, 281, 309
BseDI	CCNNGG	2 cut(s)	307, 308
BseGI	GGATG	1 cut(s)	267
BseLI	CCNNNNNNNGG	3 cut(s)	98, 335, 336
BseMII	CTCAG	1 cut(s)	269
BseNI	ACTGG	2 cut(s)	27, 144
BseXI	GCAGC	1 cut(s)	22
BshNI	GGYRCC	1 cut(s)	168
BslFI	GGGAC	2 cut(s)	311, 334
BslI	CCNNNNNNNGG	3 cut(s)	98, 335, 336
BsmAI	GTCTC	1 cut(s)	115
BsmFI	GGGAC	2 cut(s)	311, 334
Bsp1407I	TGTACA	1 cut(s)	45
Bsp143I	GATC	1 cut(s)	81
BspACI	CCGC	1 cut(s)	102
BspCNI	CTCAG	1 cut(s)	268
BspLI	GGNNCC	3 cut(s)	170, 234, 340
BspPI	GGATC	1 cut(s)	76
BspT107I	GGYRCC	1 cut(s)	168
BsrGI	TGTACA	1 cut(s)	45
BsrI	ACTGG	2 cut(s)	27, 144
BssECI	CCNNGG	2 cut(s)	307, 308
BssMI	GATC	1 cut(s)	81
Bst2UI	CCWGG	3 cut(s)	93, 281, 309
Bst4CI	ACNGT	2 cut(s)	164, 223
BstAUI	TGTACA	1 cut(s)	45
BstBAI	YACGTR	1 cut(s)	51
BstDEI	CTNAG	1 cut(s)	255
BstF5I	GGATG	1 cut(s)	267
BstKTI	GATC	1 cut(s)	84
BstMAI	GTCTC	1 cut(s)	115
BstMBI	GATC	1 cut(s)	81
BstNI	CCWGG	3 cut(s)	93, 281, 309
BstSCI	CCNGG	3 cut(s)	91, 279, 307
BstV1I	GCAGC	1 cut(s)	22
BstXI	CCANNNNNNTGG	1 cut(s)	151
BtsCI	GGATG	1 cut(s)	267
Cfr13I	GGNCC	1 cut(s)	339
CseI	GACGC	1 cut(s)	274
Csp6I	GTAC	2 cut(s)	46, 169
CviJI	RGCY	5 cut(s)	13, 35, 142, 205, 233
CviKI_1	RGCY	5 cut(s)	13, 35, 142, 205, 233
CviQI	GTAC	2 cut(s)	46, 169
DdeI	CTNAG	1 cut(s)	255
DpnI	GATC	1 cut(s)	83
DpnII	GATC	1 cut(s)	81
DraIII	CACNNNGTG	1 cut(s)	79
Eco47I	GGWCC	1 cut(s)	339
Eco72I	CACGTG	1 cut(s)	51
EcoRII	CCWGG	3 cut(s)	91, 279, 307
FaiI	YATR	1 cut(s)	157
FaqI	GGGAC	2 cut(s)	311, 334
FauI	CCCGC	1 cut(s)	95
Fnu4HI	GCNGC	1 cut(s)	11
FokI	GGATG	1 cut(s)	274
Fsp4HI	GCNGC	1 cut(s)	11
FspBI	CTAG	1 cut(s)	14
GluI	GCNGC	1 cut(s)	11
HgaI	GACGC	1 cut(s)	274
HinfI	GANTC	2 cut(s)	106, 324
Hpy166II	GTNNAC	2 cut(s)	48, 240
Hpy188I	TCNGA	1 cut(s)	258
Hpy8I	GTNNAC	2 cut(s)	48, 240
HpyAV	CCTTC	1 cut(s)	362
HpyCH4III	ACNGT	2 cut(s)	164, 223
HpyCH4IV	ACGT	1 cut(s)	50
HpyCH4V	TGCA	1 cut(s)	159
HpyF3I	CTNAG	1 cut(s)	255
HpySE526I	ACGT	1 cut(s)	50
KpnI	GGTACC	1 cut(s)	172
Kzo9I	GATC	1 cut(s)	81
LmnI	GCTCC	1 cut(s)	238
Lsp1109I	GCAGC	1 cut(s)	22
MaeI	CTAG	1 cut(s)	14
MaeII	ACGT	1 cut(s)	50
MalI	GATC	1 cut(s)	83
MboI	GATC	1 cut(s)	81
MboII	GAAGA	1 cut(s)	16
MlyI	GAGTC	1 cut(s)	333
MmeI	TCCRAC	1 cut(s)	93
MnlI	CCTC	4 cut(s)	80, 174, 184, 252
MseI	TTAA	1 cut(s)	177
MspR9I	CCNGG	3 cut(s)	93, 281, 309
MvaI	CCWGG	3 cut(s)	93, 281, 309
NdeII	GATC	1 cut(s)	81
NlaIV	GGNNCC	3 cut(s)	170, 234, 340
PasI	CCCWGGG	1 cut(s)	308
PfeI	GAWTC	1 cut(s)	106
PkrI	GCNGC	1 cut(s)	12
PleI	GAGTC	1 cut(s)	332
PmaCI	CACGTG	1 cut(s)	51
PmlI	CACGTG	1 cut(s)	51
PpsI	GAGTC	1 cut(s)	332
Ppu21I	YACGTR	1 cut(s)	51
Psp6I	CCWGG	3 cut(s)	91, 279, 307
PspCI	CACGTG	1 cut(s)	51
PspGI	CCWGG	3 cut(s)	91, 279, 307
PspN4I	GGNNCC	3 cut(s)	170, 234, 340
PspPI	GGNCC	1 cut(s)	339
RsaI	GTAC	2 cut(s)	47, 170
RsaNI	GTAC	2 cut(s)	46, 169
SaqAI	TTAA	1 cut(s)	177
SatI	GCNGC	1 cut(s)	11
Sau3AI	GATC	1 cut(s)	81
Sau96I	GGNCC	1 cut(s)	339
SchI	GAGTC	1 cut(s)	333
ScrFI	CCNGG	3 cut(s)	93, 281, 309
SetI	ASST	4 cut(s)	15, 53, 72, 94
SinI	GGWCC	1 cut(s)	339
SmlI	CTYRAG	1 cut(s)	374
SmoI	CTYRAG	1 cut(s)	374
SsiI	CCGC	1 cut(s)	102
SspMI	CTAG	1 cut(s)	14
StyD4I	CCNGG	3 cut(s)	91, 279, 307
TaaI	ACNGT	2 cut(s)	164, 223
TaiI	ACGT	1 cut(s)	53
TaqI	TCGA	2 cut(s)	29, 213
TatI	WGTACW	1 cut(s)	45
TfiI	GAWTC	1 cut(s)	106
Tru1I	TTAA	1 cut(s)	177
Tru9I	TTAA	1 cut(s)	177
TseI	GCWGC	1 cut(s)	10
TspDTI	ATGAA	1 cut(s)	17
TspGWI	ACGGA	1 cut(s)	225
VpaK11BI	GGWCC	1 cut(s)	339
XcmI	CCANNNNNNNNNTGG	1 cut(s)	305
XspI	CTAG	1 cut(s)	14

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.