Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb2

Orthogroup ID

OG0009824

Physical Location & Seq

Genomic Coordinates Forward (+)

25594508 .. 25596883

Gene Structure 2376 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_2g34460.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2268 bp

ATGGCTTACGATCTGTATTTGCTTTTCACTTCATCACTTGTTTGCAAATCTGTCTGCCTCTTTTTATGTTTATTCAGCTCGCTGTTTCTGTTGCTTACTGCTAATGAAAAATGCTCTATTGTGGTCGTTGGTTCGAGCCCCACGAATATGAACTTGGCCTGTTCTATTGGTTTCTCCACAAAGCCAAGCCTTGTCTACTTCCATTCTCTTCTAAATTCTCACATCCAAACCAAAACCCCAAAACAAGCACTACTTCTTTTTCGCAACTTGTTTGAGAACAACCTCAAACCCAATGATCTCACTTTCTCTTTGCTTCTAAAAGCTTGCACGTCTTCTTCCTCATATCTAGCTTCAGGCAATGCCAAACTAGAAGTAAATCAGATTCATACCCACCTGTTAAAATCGGGTTTCGACCGGTTTGTCTATGTGGGTACAGCTCTTCTTGATCTTTACATGAAATTGGGGCAAGTGAGAAATGCTCAGAAGATGTTCGATGGTATGCCTGAAAGAGATGATGTCTCATGGAATGCAGTGATTTGTGGGGTTTCGAGGAACGGTCATCATTCTGCGGCGTTGGAACTCTTTGTTCAGATGTGTAGAGAGGGATTTAGTCCGGGCCATACGACTTTGGTTAGTTTGGTACCGTCTTGTGGTAGGCATGAGTTTGCTTTTCAGGGGAAATCTGTTCATGGGTTTGGAATTAAGGGTGGCCTTGATTCGGATTCGCAAGTGCAGAATGCTCTTACCTCGATGTATGGCAAATGTGGAGATCTGGAAGCGGCAGAAGTCTTGTTTGAAGAGATTGTTTACAAGGGTGTGGATTCTTGGAATACTATGATCGGTGCTTATGGCCAAAATGGTTGCTTTGATGAGGCAATGCTTGTGTTTAGACGAATGCGAGAGGAAAGTGTGCAAGCCAATGTGGTGACCATGGTAAGCCTTCTGTCAGCAAATGCTGATCCAGGGTCTACTCATTGTCATGCCATTAAGACTGGTCTTGTAAATAATGCTTCTGTGATTACTTCGCTGATTTGTGAATATGCAACACGCGGCTATACAGAAACCGGAGAATTGCTTTACAAGTCATTGCCTCACAAGACTCTGGTTTCCCTAACTGCACTTATTTCAAGTCATGCTGAAAAAGGTGATATGAGCCAGGTGATGGAGTGTTTTGCTGACTTGCAGCAGCTAGAGATGAAACTAGATGCAGTGGCTATGGTTAGCATCCTCCATGGGATAAAGCACCCTGCTGAATTTGGCCTTGGACTTGCTTTCCATGGTTATGGATTGAAGACGGGGTTGGCCGCTGATTCATTGGTTGTGAATGGGTTGATAAGCATGTACTCGAGGTTTGACAAGATAGAGGATGCGTTTTCCTTATTCTCTGAGATGGGTGAAAAACCATTGATTACTTGGAATTCTTTGATATCAGGCTGCGTTCAAGCTGGAAGGTCAAGTGATGCCCTGGAGTTGTTTTCTCAAATGCAAATGTCTGGACATAGTCCAGATTCTGTTACTATCTCTAGCTTACTATCTGGGTGTTGCCAACTTGAGTACTTGAAATTTGGGGAGGGACTTCATACTTACGTACTAAGAAACAACTTGGAAGGAGAAGATTTTGTCGGAACTGCTCTTATAGACATGTACACCAAGTGCGGAAGAATAGAGCATGCTGAAATGGTGTTCAACAGTATAAAAGAGCCATGCTTGGCAACATGGAACTCAATGATCTCAGCTTATAGCTTATACGGCTTAGAACATAAAGCTCTTGTTTGCTTCTCCAAAATGCAAGAACGAGGGCTGAAGCCTGATAAAATCACATTTTTAGCAGTACTAGCCGCTTGTACACATGGAGGTCTTGTTCAAGAAGGAAAAACATATTTCATCATGATGAAGGAAAAGTTCAACATAATGCCAGGCCTGCAACACTGTGCTTGCATGATCAATCTCTTTGGCCGGGCCGGTTTGTTGGACCAGGCATTTTTCTTCATCCGGTCCATGGAAACAAACCCTGATTTTGCCGTTTGGGGAGCTCTGCTGAATGCTTGTTGCATCCATCATGAGGTGAAGCTAGGGGAATACATTGCAAAAAAGCTGTTCTTCTTGGACAGTAAAAACAGCGGCTTCCTCGTGCTGATGTCGAATCTGTATGCAGCTAAAGGAAGGTGGGAAGATGTAGCAAGAGTGAGGAAGATGATGAGAGTCACTGGAGGTGATGGCTGTTCAGGAATCAGTGTTATTGAGATGACTTCACTGCAAGCAACTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006396 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009507 GO:0009536 GO:0009987 GO:0010467 GO:0016070 GO:0016787 GO:0016788 GO:0031425 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1900865 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko00500 ko01100 ko04973 map00500 map01100 map04973

Pfam Domains

Protein Families

PPR PPR_2 PPR_3

Protein Analysis

756

Amino Acids

82.97

Weight (kDa)

6.32

Isoelectric Point (pI)

34.31

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	171 - 216	1.1e-07	PPR repeat family
PPR_2	PF13041	273 - 317	8.3e-09	PPR repeat family
PPR	PF01535	275 - 303	7.6e-09	PPR repeat
PPR_2	PF13041	470 - 516	3.3e-14	PPR repeat family
PPR	PF01535	470 - 499	1.8e-08	PPR repeat
PPR_2	PF13041	568 - 615	2.4e-08	PPR repeat family
PPR	PF01535	572 - 601	3.3e-06	PPR repeat
E_motif	PF20431	686 - 748	1.1e-14	E motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009824)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G04860
fragaria_vesca	FvH4_2g34460
malus_domestica	MD15G1083200.v1.1
prunus_persica	Prupe.1G435700_v2.0.a1 Prupe.1G435700_v2.0.a1 Prupe.1G435700_v2.0.a1 Prupe.1G435700_v2.0.a1 Prupe.1G435700_v2.0.a1 Prupe.1G435700_v2.0.a1
pyrus_communis	pycom15g07770
rosa_chinensis	RchiOBHm_Chr6g0307911
rosa_laevigata	RLG00000010687
rosa_multiflora	Rmu_sc0003252.1_g000018 Rmu_sc0032565.1_g000001
rosa_roxburghii	Rroxscaffold_7G00160770
rosa_rugosa	Rorug06G0361600
rosa_samantha	Rh6AG470700 Rh6BG481700 Rh6CG487100 Rh6DG473200
rosa_wichuraiana	Rw6G041100

Restriction Enzyme Sites

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Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	419
Acc65I	GGTACC	1 cut(s)	640
AccB1I	GGYRCC	1 cut(s)	640
AccB7I	CCANNNNNTGG	1 cut(s)	1162
AccI	GTMKAC	2 cut(s)	195, 968
AccII	CGCG	1 cut(s)	1050
AciI	CCGC	7 cut(s)	569, 779, 1050, 1305, 1656, 1839, 2121
AclWI	GGATC	1 cut(s)	953
AcoI	YGGCCR	3 cut(s)	850, 1302, 1954
AcsI	RAATTY	4 cut(s)	214, 1253, 1417, 1562
AcuI	CTGAAG	2 cut(s)	336, 1823
AdeI	CACNNNGTG	1 cut(s)	1653
AfaI	GTAC	8 cut(s)	433, 642, 1343, 1556, 1590, 1646, 1833, 1846
AfiI	CCNNNNNNNGG	5 cut(s)	650, 718, 1162, 1999, 2062
AflIII	ACRYGT	1 cut(s)	1641
AgeI	ACCGGT	1 cut(s)	414
AgsI	TTSAA	8 cut(s)	797, 1128, 1291, 1442, 1561, 1687, 1865, 1906
AjiI	CACGTC	1 cut(s)	330
AjnI	CCWGG	5 cut(s)	961, 1155, 1464, 1915, 1974
AjuI	GAANNNNNNNTTGG	6 cut(s)	137, 169, 1245, 1277, 1283, 1315
AloI	GAACNNNNNNTCC	2 cut(s)	1845, 1877
Alw21I	GWGCWC	1 cut(s)	2035
Alw26I	GTCTC	1 cut(s)	523
AlwI	GGATC	1 cut(s)	953
AlwNI	CAGNNNCTG	1 cut(s)	1511
Ama87I	CYCGRG	1 cut(s)	1345
AoxI	GGCC	9 cut(s)	156, 616, 709, 850, 1258, 1302, 1918, 1954, 1959
ApeKI	GCWGC	4 cut(s)	1183, 1186, 1434, 2153
ApoI	RAATTY	4 cut(s)	214, 1253, 1417, 1562
AsiGI	ACCGGT	1 cut(s)	414
Asp700I	GAANNNNTTC	1 cut(s)	488
Asp718I	GGTACC	1 cut(s)	640
AspS9I	GGNCC	4 cut(s)	616, 1959, 1972, 1995
AsuC2I	CCSGG	2 cut(s)	615, 1958
AsuHPI	GGTGA	6 cut(s)	937, 1157, 1171, 1406, 2077, 2225
AvaI	CYCGRG	1 cut(s)	1345
AvaII	GGWCC	2 cut(s)	1972, 1995
BalI	TGGCCA	1 cut(s)	852
BanI	GGYRCC	1 cut(s)	640
BanII	GRGCYC	2 cut(s)	140, 2035
BauI	CACGAG	1 cut(s)	2129
BbsI	GAAGAC	2 cut(s)	324, 1298
Bbv12I	GWGCWC	1 cut(s)	2035
BbvI	GCAGC	4 cut(s)	1195, 1198, 1421, 2165
BccI	CCATC	5 cut(s)	488, 1156, 1384, 2064, 2210
BceAI	ACGGC	2 cut(s)	1765, 2006
BciT130I	CCWGG	5 cut(s)	963, 1157, 1466, 1917, 1976
BclI	TGATCA	1 cut(s)	1941
BcnI	CCSGG	2 cut(s)	615, 1958
BcoDI	GTCTC	1 cut(s)	523
BfaI	CTAG	7 cut(s)	347, 368, 1190, 1202, 1524, 1835, 2072
BglII	AGATCT	1 cut(s)	769
BmcAI	AGTACT	2 cut(s)	1556, 1833
Bme1390I	CCNGG	7 cut(s)	615, 963, 1157, 1466, 1917, 1958, 1976
Bme18I	GGWCC	2 cut(s)	1972, 1995
BmeT110I	CYCGRG	1 cut(s)	1345
BmgBI	CACGTC	1 cut(s)	330
BmgT120I	GGNCC	4 cut(s)	616, 1959, 1972, 1995
BmiI	GGNNCC	1 cut(s)	642
BmrFI	CCNGG	7 cut(s)	615, 963, 1157, 1466, 1917, 1958, 1976
BmsI	GCATC	5 cut(s)	1195, 1233, 1357, 1450, 2061
BpiI	GAAGAC	2 cut(s)	324, 1298
BplI	GAGNNNNNCTC	2 cut(s)	463, 495
BpmI	CTGGAG	2 cut(s)	1487, 2229
BpuEI	CTTGAG	1 cut(s)	1571
BpuMI	CCSGG	2 cut(s)	615, 1958
BsaAI	YACGTR	1 cut(s)	1588
BsaJI	CCNNGG	7 cut(s)	930, 962, 1231, 1261, 1276, 1464, 1998
BsaWI	WCCGGW	3 cut(s)	414, 1064, 1992
BsaXI	ACNNNNNCTCC	2 cut(s)	1845, 1875
Bsc4I	CCNNNNNNNGG	5 cut(s)	650, 718, 1162, 1999, 2062
Bse118I	RCCGGY	2 cut(s)	414, 1961
Bse1I	ACTGG	2 cut(s)	997, 2212
Bse3DI	GCAATG	4 cut(s)	364, 882, 1085, 2082
BseBI	CCWGG	5 cut(s)	963, 1157, 1466, 1917, 1976
BseDI	CCNNGG	7 cut(s)	930, 962, 1231, 1261, 1276, 1464, 1998
BseGI	GGATG	5 cut(s)	222, 1224, 1372, 1989, 2052
BseLI	CCNNNNNNNGG	5 cut(s)	650, 718, 1162, 1999, 2062
BseMI	GCAATG	4 cut(s)	364, 882, 1085, 2082
BseMII	CTCAG	3 cut(s)	494, 1377, 1746
BseNI	ACTGG	2 cut(s)	997, 2212
BseXI	GCAGC	4 cut(s)	1195, 1198, 1421, 2165
BsgI	GTGCAG	2 cut(s)	752, 1101
Bsh1236I	CGCG	1 cut(s)	1050
Bsh1285I	CGRYCG	1 cut(s)	415
BshFI	GGCC	9 cut(s)	158, 618, 711, 852, 1260, 1304, 1920, 1956, 1961
BshNI	GGYRCC	1 cut(s)	640
BshTI	ACCGGT	1 cut(s)	414
BsiEI	CGRYCG	1 cut(s)	415
BsiHKAI	GWGCWC	1 cut(s)	2035
BsiHKCI	CYCGRG	1 cut(s)	1345
BsiSI	CCGG	6 cut(s)	415, 614, 1065, 1957, 1962, 1993
BslFI	GGGAC	1 cut(s)	1587
BslI	CCNNNNNNNGG	5 cut(s)	650, 718, 1162, 1999, 2062
BsmAI	GTCTC	1 cut(s)	523
BsmFI	GGGAC	1 cut(s)	1587
BsmI	GAATGC	4 cut(s)	532, 742, 900, 2047
BsnI	GGCC	9 cut(s)	158, 618, 711, 852, 1260, 1304, 1920, 1956, 1961
BsoBI	CYCGRG	1 cut(s)	1345
Bsp1286I	GDGCHC	2 cut(s)	140, 2035
Bsp1407I	TGTACA	2 cut(s)	1644, 1844
Bsp143I	GATC	8 cut(s)	10, 295, 445, 769, 837, 958, 1728, 1941
Bsp19I	CCATGG	4 cut(s)	930, 1231, 1276, 1998
BspACI	CCGC	7 cut(s)	569, 779, 1050, 1305, 1656, 1839, 2121
BspANI	GGCC	9 cut(s)	158, 618, 711, 852, 1260, 1304, 1920, 1956, 1961
BspCNI	CTCAG	3 cut(s)	493, 1378, 1745
BspFNI	CGCG	1 cut(s)	1050
BspHI	TCATGA	2 cut(s)	1887, 2059
BspLI	GGNNCC	1 cut(s)	642
BspPI	GGATC	1 cut(s)	953
BspQI	GCTCTTC	1 cut(s)	444
BspT107I	GGYRCC	1 cut(s)	640
BsrDI	GCAATG	4 cut(s)	364, 882, 1085, 2082
BsrFI	RCCGGY	2 cut(s)	414, 1961
BsrGI	TGTACA	2 cut(s)	1644, 1844
BsrI	ACTGG	2 cut(s)	997, 2212
BssAI	RCCGGY	2 cut(s)	414, 1961
BssECI	CCNNGG	7 cut(s)	930, 962, 1231, 1261, 1276, 1464, 1998
BssMI	GATC	8 cut(s)	10, 295, 445, 769, 837, 958, 1728, 1941
BssSI	CACGAG	1 cut(s)	2129
BssT1I	CCWWGG	5 cut(s)	930, 1231, 1261, 1276, 1998
Bst2BI	CACGAG	1 cut(s)	2129
Bst2UI	CCWGG	5 cut(s)	963, 1157, 1466, 1917, 1976
Bst4CI	ACNGT	5 cut(s)	557, 645, 1691, 1931, 2111
Bst6I	CTCTTC	3 cut(s)	213, 444, 792
BstAUI	TGTACA	2 cut(s)	1644, 1844
BstBAI	YACGTR	1 cut(s)	1588
BstC8I	GCNNGC	7 cut(s)	80, 325, 915, 1671, 1922, 1936, 2259
BstDEI	CTNAG	5 cut(s)	480, 1386, 1592, 1732, 1753
BstDSI	CCRYGG	4 cut(s)	930, 1231, 1276, 1998
BstEII	GGTNACC	1 cut(s)	925
BstF5I	GGATG	5 cut(s)	222, 1224, 1372, 1989, 2052
BstFNI	CGCG	1 cut(s)	1050
BstKTI	GATC	8 cut(s)	13, 298, 448, 772, 840, 961, 1731, 1944
BstMAI	GTCTC	1 cut(s)	523
BstMBI	GATC	8 cut(s)	10, 295, 445, 769, 837, 958, 1728, 1941
BstMCI	CGRYCG	1 cut(s)	415
BstMWI	GCNNNNNNNGC	3 cut(s)	1749, 1835, 1921
BstNI	CCWGG	5 cut(s)	963, 1157, 1466, 1917, 1976
BstNSI	RCATGY	3 cut(s)	1342, 1645, 1673
BstPI	GGTNACC	1 cut(s)	925
BstSCI	CCNGG	7 cut(s)	613, 961, 1155, 1464, 1915, 1956, 1974
BstSNI	TACGTA	1 cut(s)	1588
BstUI	CGCG	1 cut(s)	1050
BstV1I	GCAGC	4 cut(s)	1195, 1198, 1421, 2165
BstV2I	GAAGAC	2 cut(s)	324, 1298
BstX2I	RGATCY	1 cut(s)	769
BstXI	CCANNNNNNTGG	1 cut(s)	1283
BstYI	RGATCY	1 cut(s)	769
BsuRI	GGCC	9 cut(s)	158, 618, 711, 852, 1260, 1304, 1920, 1956, 1961
BtgI	CCRYGG	4 cut(s)	930, 1231, 1276, 1998
BtrI	CACGTC	1 cut(s)	330
BtsCI	GGATG	5 cut(s)	222, 1224, 1372, 1989, 2052
BtsI	GCAGTG	3 cut(s)	537, 1215, 2252
BtsIMutI	CAGTG	6 cut(s)	537, 1215, 1927, 2205, 2239, 2252
Cac8I	GCNNGC	7 cut(s)	80, 325, 915, 1671, 1922, 1936, 2259
CaiI	CAGNNNCTG	1 cut(s)	1511
CciI	TCATGA	2 cut(s)	1887, 2059
Cfr10I	RCCGGY	2 cut(s)	414, 1961
Cfr13I	GGNCC	4 cut(s)	616, 1959, 1972, 1995
Csp6I	GTAC	8 cut(s)	432, 641, 1342, 1555, 1589, 1645, 1832, 1845
CspAI	ACCGGT	1 cut(s)	414
CviQI	GTAC	8 cut(s)	432, 641, 1342, 1555, 1589, 1645, 1832, 1845
DdeI	CTNAG	5 cut(s)	480, 1386, 1592, 1732, 1753
DpnI	GATC	8 cut(s)	12, 297, 447, 771, 839, 960, 1730, 1943
DpnII	GATC	8 cut(s)	10, 295, 445, 769, 837, 958, 1728, 1941
DraIII	CACNNNGTG	1 cut(s)	1653
DrdI	GACNNNNNNGTC	1 cut(s)	419
DseDI	GACNNNNNNGTC	1 cut(s)	419
EaeI	YGGCCR	3 cut(s)	850, 1302, 1954
Eam1104I	CTCTTC	3 cut(s)	213, 444, 792
EarI	CTCTTC	3 cut(s)	213, 444, 792
Ecl136II	GAGCTC	1 cut(s)	2033
Eco105I	TACGTA	1 cut(s)	1588
Eco130I	CCWWGG	5 cut(s)	930, 1231, 1261, 1276, 1998
Eco147I	AGGCCT	1 cut(s)	1920
Eco24I	GRGCYC	2 cut(s)	140, 2035
Eco32I	GATATC	1 cut(s)	1428
Eco47I	GGWCC	2 cut(s)	1972, 1995
Eco53kI	GAGCTC	1 cut(s)	2033
Eco57I	CTGAAG	2 cut(s)	336, 1823
Eco88I	CYCGRG	1 cut(s)	1345
Eco91I	GGTNACC	1 cut(s)	925
EcoICRI	GAGCTC	1 cut(s)	2033
EcoO65I	GGTNACC	1 cut(s)	925
EcoRI	GAATTC	1 cut(s)	1417
EcoRII	CCWGG	5 cut(s)	961, 1155, 1464, 1915, 1974
EcoRV	GATATC	1 cut(s)	1428
EcoT14I	CCWWGG	5 cut(s)	930, 1231, 1261, 1276, 1998
EcoT38I	GRGCYC	2 cut(s)	140, 2035
ErhI	CCWWGG	5 cut(s)	930, 1231, 1261, 1276, 1998
FalI	AAGNNNNNCTT	4 cut(s)	237, 269, 2084, 2116
FaqI	GGGAC	1 cut(s)	1587
FbaI	TGATCA	1 cut(s)	1941
FblI	GTMKAC	2 cut(s)	195, 968
FokI	GGATG	5 cut(s)	209, 1211, 1379, 1976, 2039
FriOI	GRGCYC	2 cut(s)	140, 2035
FspBI	CTAG	7 cut(s)	347, 368, 1190, 1202, 1524, 1835, 2072
GsuI	CTGGAG	2 cut(s)	1487, 2229
HaeIII	GGCC	9 cut(s)	158, 618, 711, 852, 1260, 1304, 1920, 1956, 1961
HapII	CCGG	6 cut(s)	415, 614, 1065, 1957, 1962, 1993
HindIII	AAGCTT	1 cut(s)	321
HpaII	CCGG	6 cut(s)	415, 614, 1065, 1957, 1962, 1993
HphI	GGTGA	6 cut(s)	937, 1157, 1171, 1406, 2077, 2225
Hpy166II	GTNNAC	5 cut(s)	196, 808, 969, 1647, 1847
Hpy188I	TCNGA	6 cut(s)	381, 483, 591, 721, 1387, 1625
Hpy188III	TCNNGA	8 cut(s)	443, 773, 1494, 1505, 1865, 1888, 2060, 2226
Hpy8I	GTNNAC	5 cut(s)	196, 808, 969, 1647, 1847
HpyAV	CCTTC	6 cut(s)	950, 1443, 1601, 1862, 1888, 2157
HpyCH4III	ACNGT	5 cut(s)	557, 645, 1691, 1931, 2111
HpyCH4IV	ACGT	2 cut(s)	329, 1587
HpyF10VI	GCNNNNNNNGC	3 cut(s)	1749, 1835, 1921
HpyF3I	CTNAG	5 cut(s)	480, 1386, 1592, 1732, 1753
HpySE526I	ACGT	2 cut(s)	329, 1587
KpnI	GGTACC	1 cut(s)	644
Ksp22I	TGATCA	1 cut(s)	1941
Kzo9I	GATC	8 cut(s)	10, 295, 445, 769, 837, 958, 1728, 1941
LguI	GCTCTTC	1 cut(s)	444
LmnI	GCTCC	1 cut(s)	2030
Lsp1109I	GCAGC	4 cut(s)	1195, 1198, 1421, 2165
LweI	GCATC	5 cut(s)	1195, 1233, 1357, 1450, 2061
MaeI	CTAG	7 cut(s)	347, 368, 1190, 1202, 1524, 1835, 2072
MaeII	ACGT	2 cut(s)	329, 1587
MaeIII	GTNAC	3 cut(s)	925, 1513, 2203
MalI	GATC	8 cut(s)	12, 297, 447, 771, 839, 960, 1730, 1943
MboI	GATC	8 cut(s)	10, 295, 445, 769, 837, 958, 1728, 1941
MflI	RGATCY	1 cut(s)	769
MhlI	GDGCHC	2 cut(s)	140, 2035
MlsI	TGGCCA	1 cut(s)	852
MluCI	AATT	7 cut(s)	214, 458, 699, 1070, 1253, 1417, 1562
MluNI	TGGCCA	1 cut(s)	852
MlyI	GAGTC	2 cut(s)	1093, 2211
MmeI	TCCRAC	3 cut(s)	555, 1603, 1950
Mox20I	TGGCCA	1 cut(s)	852
MroXI	GAANNNNTTC	1 cut(s)	488
MscI	TGGCCA	1 cut(s)	852
MseI	TTAA	3 cut(s)	398, 702, 987
MslI	CAYNNNNRTG	4 cut(s)	146, 978, 1281, 1889
Msp20I	TGGCCA	1 cut(s)	852
MspA1I	CMGCKG	2 cut(s)	1307, 2121
MspI	CCGG	6 cut(s)	415, 614, 1065, 1957, 1962, 1993
MspR9I	CCNGG	7 cut(s)	615, 963, 1157, 1466, 1917, 1958, 1976
Mva1269I	GAATGC	4 cut(s)	532, 742, 900, 2047
MvaI	CCWGG	5 cut(s)	963, 1157, 1466, 1917, 1976
MvnI	CGCG	1 cut(s)	1050
MwoI	GCNNNNNNNGC	3 cut(s)	1749, 1835, 1921
NciI	CCSGG	2 cut(s)	615, 1958
NcoI	CCATGG	4 cut(s)	930, 1231, 1276, 1998
NdeII	GATC	8 cut(s)	10, 295, 445, 769, 837, 958, 1728, 1941
NlaIV	GGNNCC	1 cut(s)	642
NmuCI	GTSAC	2 cut(s)	925, 2203
NspI	RCATGY	3 cut(s)	1342, 1645, 1673
PaeI	GCATGC	1 cut(s)	1673
PaeR7I	CTCGAG	1 cut(s)	1345
PagI	TCATGA	2 cut(s)	1887, 2059
PceI	AGGCCT	1 cut(s)	1920
PciI	ACATGT	1 cut(s)	1641
PciSI	GCTCTTC	1 cut(s)	444
PcsI	WCGNNNNNNNCGW	1 cut(s)	140
PctI	GAATGC	4 cut(s)	532, 742, 900, 2047
PdmI	GAANNNNTTC	1 cut(s)	488
PfeI	GAWTC	8 cut(s)	382, 716, 722, 821, 1310, 1508, 2143, 2229
PflFI	GACNNNGTC	1 cut(s)	1500
PflMI	CCANNNNNTGG	1 cut(s)	1162
PinAI	ACCGGT	1 cut(s)	414
PleI	GAGTC	2 cut(s)	1093, 2210
PpsI	GAGTC	2 cut(s)	1093, 2210
Ppu21I	YACGTR	1 cut(s)	1588
PscI	ACATGT	1 cut(s)	1641
Psp124BI	GAGCTC	1 cut(s)	2035
Psp6I	CCWGG	5 cut(s)	961, 1155, 1464, 1915, 1974
PspEI	GGTNACC	1 cut(s)	925
PspGI	CCWGG	5 cut(s)	961, 1155, 1464, 1915, 1974
PspN4I	GGNNCC	1 cut(s)	642
PspPI	GGNCC	4 cut(s)	616, 1959, 1972, 1995
PspXI	VCTCGAGB	1 cut(s)	1345
PstNI	CAGNNNCTG	1 cut(s)	1511
PsuI	RGATCY	1 cut(s)	769
PsyI	GACNNNGTC	1 cut(s)	1500
RsaI	GTAC	8 cut(s)	433, 642, 1343, 1556, 1590, 1646, 1833, 1846
RsaNI	GTAC	8 cut(s)	432, 641, 1342, 1555, 1589, 1645, 1832, 1845
RseI	CAYNNNNRTG	4 cut(s)	146, 978, 1281, 1889
SacI	GAGCTC	1 cut(s)	2035
SapI	GCTCTTC	1 cut(s)	444
SaqAI	TTAA	3 cut(s)	398, 702, 987
Sau3AI	GATC	8 cut(s)	10, 295, 445, 769, 837, 958, 1728, 1941
Sau96I	GGNCC	4 cut(s)	616, 1959, 1972, 1995
ScaI	AGTACT	2 cut(s)	1556, 1833
SchI	GAGTC	2 cut(s)	1093, 2211
ScrFI	CCNGG	7 cut(s)	615, 963, 1157, 1466, 1917, 1958, 1976
SduI	GDGCHC	2 cut(s)	140, 2035
SfaNI	GCATC	5 cut(s)	1195, 1233, 1357, 1450, 2061
Sfr274I	CTCGAG	1 cut(s)	1345
SinI	GGWCC	2 cut(s)	1972, 1995
SlaI	CTCGAG	1 cut(s)	1345
SmiMI	CAYNNNNRTG	4 cut(s)	146, 978, 1281, 1889
SmlI	CTYRAG	2 cut(s)	1345, 1550
SmoI	CTYRAG	2 cut(s)	1345, 1550
SnaBI	TACGTA	1 cut(s)	1588
SphI	GCATGC	1 cut(s)	1673
Sse9I	AATT	7 cut(s)	214, 458, 699, 1070, 1253, 1417, 1562
SseBI	AGGCCT	1 cut(s)	1920
SsiI	CCGC	7 cut(s)	569, 779, 1050, 1305, 1656, 1839, 2121
SspMI	CTAG	7 cut(s)	347, 368, 1190, 1202, 1524, 1835, 2072
SstI	GAGCTC	1 cut(s)	2035
StuI	AGGCCT	1 cut(s)	1920
StyD4I	CCNGG	7 cut(s)	613, 961, 1155, 1464, 1915, 1956, 1974
StyI	CCWWGG	5 cut(s)	930, 1231, 1261, 1276, 1998
TaaI	ACNGT	5 cut(s)	557, 645, 1691, 1931, 2111
TaiI	ACGT	2 cut(s)	332, 1590
TaqI	TCGA	7 cut(s)	134, 411, 492, 548, 749, 1346, 2141
TasI	AATT	7 cut(s)	214, 458, 699, 1070, 1253, 1417, 1562
TatI	WGTACW	5 cut(s)	1341, 1554, 1644, 1831, 1844
TauI	GCSGC	6 cut(s)	572, 782, 1053, 1307, 1841, 2124
TfiI	GAWTC	8 cut(s)	382, 716, 722, 821, 1310, 1508, 2143, 2229
Tru1I	TTAA	3 cut(s)	398, 702, 987
Tru9I	TTAA	3 cut(s)	398, 702, 987
TscAI	CASTG	6 cut(s)	537, 1215, 1934, 2212, 2239, 2259
TseFI	GTSAC	2 cut(s)	925, 2203
TseI	GCWGC	4 cut(s)	1183, 1186, 1434, 2153
Tsp45I	GTSAC	2 cut(s)	925, 2203
TspRI	CASTG	6 cut(s)	537, 1215, 1934, 2212, 2239, 2259
Tth111I	GACNNNGTC	1 cut(s)	1500
Van91I	CCANNNNNTGG	1 cut(s)	1162
VpaK11BI	GGWCC	2 cut(s)	1972, 1995
XapI	RAATTY	4 cut(s)	214, 1253, 1417, 1562
XceI	RCATGY	3 cut(s)	1342, 1645, 1673
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1410
XhoI	CTCGAG	1 cut(s)	1345
XmiI	GTMKAC	2 cut(s)	195, 968
XmnI	GAANNNNTTC	1 cut(s)	488
XspI	CTAG	7 cut(s)	347, 368, 1190, 1202, 1524, 1835, 2072
ZrmI	AGTACT	2 cut(s)	1556, 1833

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.