Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6A

Orthogroup ID

OG0009824

Physical Location & Seq

Genomic Coordinates Reverse (-)

65369022 .. 65371127

Gene Structure 2106 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6AG470700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2106 bp

ATGAACTGGGCCTGTTCTATTGGTCTCTCTACAAAGCCTGGCCTTGTCTACTTCCACTCTCTTCTAAATTCTCACATTCAAACCAAAAATCCAAAACAAGCTTTACTCCTTTTTCGCCAGTTGTACGAGTTCAATGTGAAACCCAATGATCTCACTTCCTCTTTGCTCCTAAAAGCTTGCACATCTTCTTCCTCATATTTAAATTCAGCTAATGCTGAAATAGAAGCGAACCAGATTCATACCCACTTGATAAAATCCGGTGTTGACCGATTCGTATATGTGGGTACAGCTCTTCTTGATCTTTACATGAAATTGGGGCGTGTGAGAAATGCTCAGAAGCTGTTCGATGATATGCCTGAGAGAGATGATGTCTCTTGGAATGCACTGATTTGTGGGGTTTCGAGAAACGGTCGCCATTTCGAAGCGTTGGAACTCTTTGTGCAAATGTGCAGAGAGGGGTTTCGTCCTCGTCATACGACTTTGGTTAGTTTGGTACCGTCTTGTGGCAGGCATGAGTTGGCTTTTCAGGGGAAATCTGTTCATGGGTTTGGAATTAAGGCCGGCCTTGATTCGGATTCGCAAGTGAAGAATGCTCTTACTTCGATGTATGGTAAATGCGCAGATTTGGAAGCGGCAGAAGTCTTGTTTGAAGAGATTGGTGACAAGAGCGTGGTTTCTTGGAATACTATGATCGGTGCTTATGGCCAAAATGGTTTCTTTGACGAGGCAATGCTTGTGTTTAAACGTATGCGAGAGGAGGATGTGCAAGCCAATCTGGTGACCGTGGTAAGCCTTCTGTCAGCAAATGCCGATCCAGAGTCTGCTCATTGTCATGCCATCAAGACTGGTCTTGTAAATAATGCTTCTGTGATTACTTCGCTGATTTGCGAGTATGCAACGCGCGGCAACACAGAATCCGGAGAACTGCTTTACAAGTCATTGCCTCAGAAGACTTTGGTTTCCCTAACTGCACTAATTTCTAGTTATGCGGAGAGAGATAACATGGGTCAGGTGATGGAGTGTTTTGCTCACTTGCTGCAGTTAGACATGAAACTAGATGCAGTGGCTATGGTTAGCATTCTCCATGGGATAAAGCACCCTGCTGACTTTGGCCTTGGACTTGCTTTCCATGGTTACGGATTGAAGACGGGGTTGACCGCTGATTCTTTGGCCGTGAATGGGTTGATAAGCATGTACTCAAGGTTTGACAATATAGAGGATGCGTTTTCCTTATTCTCTGAGATGCGTGAAAAACCGTTGATTACTTGGAATTCTTTGGTATCGGGCTGTGTTCAAGCTGGAAGGTCAAGTGATGCGCTGGAGTTGTTTTCTCAGATGAAAATGTCTGGACATAGTCCAGATTCCATTTCTATCTCTAGTTTACTATCTGGGTGTTGCCAAATTGAGTACTTGAAATTTGGGGAGGGACTTCATACATATGTACTAAGAAACAACTTGGAAGGAGAAGATTTTGTTGGAACTGCTCTTATAGACATGTACACCAAGTGTGGAAGAATAGACCGTGCTGAAAGGGTGTTCAAGAGTATAAAAGAGCCATGCTTGGCAACATGGAACTCAATGATCTCAGGTTATAGCTTATACGGTTTAGAACATAAGGCTCTTGTTTGCTTCTCCGAAATGCAAGAACAAGGACTGAAGCCTGATAAAATAACTTTTTTGGCAGTTTTAGCCGCTTGTACTCATGGGGGTCTTGTTCATGGAGGAAGAACATATTTCCAAATGATGAAGGAAAGGTTCAACCTGATACCAAGTTTGCAACACTGTGCTTGCATGGTCAATCTCTATGGTCGTGCCGGTTTGTTGGACGACGCATTGATGTTTATCAGGGACATGGAAATAGAGCCTGATTTCGCGGTCTGGGGAGCTCTGCTGAATGCTTGTTGCATCCATCAAGAGGTGAAGCTTGGGGAATACATTGCCAAAAAATTGTTCTTCTTGGACAGTAAAAATGCCGGCTTCCTCGTGTTGATGTCAAATCTTTACGCAATCAAAAGAAGGTGGGAAGATGTAGCAAGAGTGAGGGAGATGATGAGAGAGACCGGAGGTGATGGATGTTCAGGAATTAGTGTCATTGAGATGACTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006396 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009507 GO:0009536 GO:0009987 GO:0010467 GO:0016070 GO:0016787 GO:0016788 GO:0031425 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1900865 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko00500 ko01100 ko04973 map00500 map01100 map04973

Pfam Domains

Protein Families

PPR PPR_2 PPR_3

Protein Analysis

701

Amino Acids

77.72

Weight (kDa)

6.04

Isoelectric Point (pI)

34.72

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	122 - 165	1.2e-06	PPR repeat family
PPR	PF01535	124 - 154	4.7e-07	PPR repeat
PPR_2	PF13041	223 - 268	5.3e-09	PPR repeat family
PPR	PF01535	225 - 254	1.2e-09	PPR repeat
PPR_2	PF13041	421 - 467	1.8e-12	PPR repeat family
PPR	PF01535	421 - 450	5.5e-08	PPR repeat
PPR_2	PF13041	519 - 566	1.5e-08	PPR repeat family
PPR	PF01535	523 - 552	2.6e-06	PPR repeat
E_motif	PF20431	637 - 699	8.4e-14	E motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009824)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G04860
fragaria_vesca	FvH4_2g34460
malus_domestica	MD15G1083200.v1.1
prunus_persica	Prupe.1G435700_v2.0.a1 Prupe.1G435700_v2.0.a1 Prupe.1G435700_v2.0.a1 Prupe.1G435700_v2.0.a1 Prupe.1G435700_v2.0.a1 Prupe.1G435700_v2.0.a1
pyrus_communis	pycom15g07770
rosa_chinensis	RchiOBHm_Chr6g0307911
rosa_laevigata	RLG00000010687
rosa_multiflora	Rmu_sc0003252.1_g000018 Rmu_sc0032565.1_g000001
rosa_roxburghii	Rroxscaffold_7G00160770
rosa_rugosa	Rorug06G0361600
rosa_samantha	Rh6AG470700 Rh6BG481700 Rh6CG487100 Rh6DG473200
rosa_wichuraiana	Rw6G041100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	619
Acc65I	GGTACC	1 cut(s)	493
AccB1I	GGYRCC	1 cut(s)	493
AccI	GTMKAC	1 cut(s)	48
AccII	CGCG	3 cut(s)	901, 903, 1874
AccIII	TCCGGA	1 cut(s)	917
AciI	CCGC	6 cut(s)	632, 903, 989, 1158, 1692, 1874
AclWI	GGATC	1 cut(s)	806
AcoI	YGGCCR	2 cut(s)	703, 1170
AcsI	RAATTY	4 cut(s)	67, 202, 1270, 1415
AcuI	CTGAAG	1 cut(s)	1676
AdeI	CACNNNGTG	1 cut(s)	1506
AfaI	GTAC	8 cut(s)	125, 286, 495, 1196, 1409, 1443, 1499, 1699
AfiI	CCNNNNNNNGG	4 cut(s)	503, 571, 1179, 1915
AflIII	ACRYGT	1 cut(s)	1494
AgsI	TTSAA	8 cut(s)	80, 133, 650, 1144, 1295, 1414, 1540, 1759
AjnI	CCWGG	1 cut(s)	37
AjuI	GAANNNNNNNTTGG	4 cut(s)	1458, 1490, 1934, 1966
AluBI	AGCT	9 cut(s)	101, 176, 209, 290, 340, 1298, 1596, 1886, 1924
AluI	AGCT	9 cut(s)	101, 176, 209, 290, 340, 1298, 1596, 1886, 1924
Alw21I	GWGCWC	1 cut(s)	1888
Alw26I	GTCTC	3 cut(s)	29, 376, 2051
AlwI	GGATC	1 cut(s)	806
AlwNI	CAGNNNCTG	2 cut(s)	340, 821
Aor13HI	TCCGGA	1 cut(s)	917
AoxI	GGCC	7 cut(s)	9, 40, 558, 562, 703, 1111, 1170
ApeKI	GCWGC	1 cut(s)	1036
ApoI	RAATTY	4 cut(s)	67, 202, 1270, 1415
Asp700I	GAANNNNTTC	1 cut(s)	341
Asp718I	GGTACC	1 cut(s)	493
AspLEI	GCGC	3 cut(s)	620, 903, 1318
AspS9I	GGNCC	1 cut(s)	9
AsuHPI	GGTGA	5 cut(s)	671, 790, 1024, 1930, 2078
AsuII	TTCGAA	1 cut(s)	420
BalI	TGGCCA	1 cut(s)	705
BanI	GGYRCC	1 cut(s)	493
BanII	GRGCYC	1 cut(s)	1888
BauI	CACGAG	1 cut(s)	1982
BbsI	GAAGAC	2 cut(s)	956, 1151
Bbv12I	GWGCWC	1 cut(s)	1888
BbvI	GCAGC	1 cut(s)	1023
BccI	CCATC	4 cut(s)	845, 1009, 1917, 2063
BceAI	ACGGC	1 cut(s)	1157
BciT130I	CCWGG	1 cut(s)	39
BcoDI	GTCTC	3 cut(s)	29, 376, 2051
BfaI	CTAG	3 cut(s)	981, 1055, 1377
BfmI	CTRYAG	1 cut(s)	1037
BisI	GCNGC	4 cut(s)	633, 904, 1037, 1692
BlsI	GCNGC	4 cut(s)	634, 905, 1038, 1693
BmcAI	AGTACT	1 cut(s)	1409
Bme1390I	CCNGG	1 cut(s)	39
BmgT120I	GGNCC	1 cut(s)	9
BmiI	GGNNCC	1 cut(s)	495
BmrFI	CCNGG	1 cut(s)	39
BmrI	ACTGGG	1 cut(s)	16
BmsI	GCATC	5 cut(s)	1048, 1210, 1233, 1303, 1914
BmuI	ACTGGG	1 cut(s)	16
BpiI	GAAGAC	2 cut(s)	956, 1151
BplI	GAGNNNNNCTC	2 cut(s)	316, 348
BpmI	CTGGAG	1 cut(s)	1340
Bpu14I	TTCGAA	1 cut(s)	420
BpuEI	CTTGAG	1 cut(s)	1183
BsaBI	GATNNNNATC	1 cut(s)	1841
BsaI	GGTCTC	2 cut(s)	29, 2051
BsaJI	CCNNGG	4 cut(s)	783, 1084, 1114, 1129
BsaWI	WCCGGW	3 cut(s)	257, 917, 2060
Bsc4I	CCNNNNNNNGG	4 cut(s)	503, 571, 1179, 1915
Bse118I	RCCGGY	3 cut(s)	560, 1814, 1973
Bse1I	ACTGG	3 cut(s)	11, 118, 850
Bse3DI	GCAATG	3 cut(s)	735, 938, 1935
Bse8I	GATNNNNATC	1 cut(s)	1841
BseAI	TCCGGA	1 cut(s)	917
BseBI	CCWGG	1 cut(s)	39
BseDI	CCNNGG	4 cut(s)	783, 1084, 1114, 1129
BseGI	GGATG	4 cut(s)	766, 1225, 1905, 2078
BseJI	GATNNNNATC	1 cut(s)	1841
BseLI	CCNNNNNNNGG	4 cut(s)	503, 571, 1179, 1915
BseMI	GCAATG	3 cut(s)	735, 938, 1935
BseMII	CTCAG	6 cut(s)	347, 348, 959, 1230, 1346, 1599
BseNI	ACTGG	3 cut(s)	11, 118, 850
BseRI	GAGGAG	1 cut(s)	770
BseXI	GCAGC	1 cut(s)	1023
BsgI	GTGCAG	2 cut(s)	469, 954
Bsh1236I	CGCG	3 cut(s)	901, 903, 1874
Bsh1285I	CGRYCG	1 cut(s)	412
BshFI	GGCC	7 cut(s)	11, 42, 560, 564, 705, 1113, 1172
BshNI	GGYRCC	1 cut(s)	493
BsiEI	CGRYCG	1 cut(s)	412
BsiHKAI	GWGCWC	1 cut(s)	1888
BsiSI	CCGG	6 cut(s)	258, 561, 918, 1815, 1974, 2061
BslFI	GGGAC	2 cut(s)	1440, 1862
BslI	CCNNNNNNNGG	4 cut(s)	503, 571, 1179, 1915
BsmAI	GTCTC	3 cut(s)	29, 376, 2051
BsmFI	GGGAC	2 cut(s)	1440, 1862
BsmI	GAATGC	4 cut(s)	385, 595, 1077, 1900
BsnI	GGCC	7 cut(s)	11, 42, 560, 564, 705, 1113, 1172
Bso31I	GGTCTC	2 cut(s)	29, 2051
Bsp119I	TTCGAA	1 cut(s)	420
Bsp1286I	GDGCHC	1 cut(s)	1888
Bsp13I	TCCGGA	1 cut(s)	917
Bsp1407I	TGTACA	1 cut(s)	1497
Bsp143I	GATC	5 cut(s)	148, 298, 690, 811, 1581
Bsp19I	CCATGG	2 cut(s)	1084, 1129
BspACI	CCGC	6 cut(s)	632, 903, 989, 1158, 1692, 1874
BspANI	GGCC	7 cut(s)	11, 42, 560, 564, 705, 1113, 1172
BspCNI	CTCAG	6 cut(s)	346, 349, 958, 1231, 1345, 1598
BspEI	TCCGGA	1 cut(s)	917
BspFNI	CGCG	3 cut(s)	901, 903, 1874
BspLI	GGNNCC	1 cut(s)	495
BspMAI	CTGCAG	1 cut(s)	1041
BspPI	GGATC	1 cut(s)	806
BspQI	GCTCTTC	1 cut(s)	297
BspT104I	TTCGAA	1 cut(s)	420
BspT107I	GGYRCC	1 cut(s)	493
BspTNI	GGTCTC	2 cut(s)	29, 2051
BsrDI	GCAATG	3 cut(s)	735, 938, 1935
BsrFI	RCCGGY	3 cut(s)	560, 1814, 1973
BsrGI	TGTACA	1 cut(s)	1497
BsrI	ACTGG	3 cut(s)	11, 118, 850
BssAI	RCCGGY	3 cut(s)	560, 1814, 1973
BssECI	CCNNGG	4 cut(s)	783, 1084, 1114, 1129
BssMI	GATC	5 cut(s)	148, 298, 690, 811, 1581
BssSI	CACGAG	1 cut(s)	1982
BssT1I	CCWWGG	3 cut(s)	1084, 1114, 1129
Bst2BI	CACGAG	1 cut(s)	1982
Bst2UI	CCWGG	1 cut(s)	39
Bst4CI	ACNGT	8 cut(s)	410, 498, 784, 1257, 1523, 1604, 1784, 1964
Bst6I	CTCTTC	3 cut(s)	66, 297, 645
BstAUI	TGTACA	1 cut(s)	1497
BstBI	TTCGAA	1 cut(s)	420
BstC8I	GCNNGC	6 cut(s)	178, 509, 562, 768, 1789, 1975
BstDEI	CTNAG	7 cut(s)	333, 357, 945, 1239, 1332, 1445, 1585
BstDSI	CCRYGG	3 cut(s)	783, 1084, 1129
BstEII	GGTNACC	1 cut(s)	778
BstF5I	GGATG	4 cut(s)	766, 1225, 1905, 2078
BstFNI	CGCG	3 cut(s)	901, 903, 1874
BstHHI	GCGC	3 cut(s)	620, 903, 1318
BstKTI	GATC	5 cut(s)	151, 301, 693, 814, 1584
BstMAI	GTCTC	3 cut(s)	29, 376, 2051
BstMBI	GATC	5 cut(s)	148, 298, 690, 811, 1581
BstMCI	CGRYCG	1 cut(s)	412
BstMWI	GCNNNNNNNGC	1 cut(s)	1688
BstNI	CCWGG	1 cut(s)	39
BstNSI	RCATGY	2 cut(s)	1195, 1498
BstPI	GGTNACC	1 cut(s)	778
BstSCI	CCNGG	1 cut(s)	37
BstSFI	CTRYAG	1 cut(s)	1037
BstUI	CGCG	3 cut(s)	901, 903, 1874
BstV1I	GCAGC	1 cut(s)	1023
BstV2I	GAAGAC	2 cut(s)	956, 1151
BsuRI	GGCC	7 cut(s)	11, 42, 560, 564, 705, 1113, 1172
BtgI	CCRYGG	3 cut(s)	783, 1084, 1129
BtsCI	GGATG	4 cut(s)	766, 1225, 1905, 2078
BtsI	GCAGTG	1 cut(s)	1068
BtsIMutI	CAGTG	3 cut(s)	383, 1068, 1780
Cac8I	GCNNGC	6 cut(s)	178, 509, 562, 768, 1789, 1975
CaiI	CAGNNNCTG	2 cut(s)	340, 821
CfoI	GCGC	3 cut(s)	620, 903, 1318
Cfr10I	RCCGGY	3 cut(s)	560, 1814, 1973
Cfr13I	GGNCC	1 cut(s)	9
CseI	GACGC	1 cut(s)	1838
Csp6I	GTAC	8 cut(s)	124, 285, 494, 1195, 1408, 1442, 1498, 1698
CviQI	GTAC	8 cut(s)	124, 285, 494, 1195, 1408, 1442, 1498, 1698
DdeI	CTNAG	7 cut(s)	333, 357, 945, 1239, 1332, 1445, 1585
DpnI	GATC	5 cut(s)	150, 300, 692, 813, 1583
DpnII	GATC	5 cut(s)	148, 298, 690, 811, 1581
DraI	TTTAAA	2 cut(s)	201, 742
DraIII	CACNNNGTG	1 cut(s)	1506
EaeI	YGGCCR	2 cut(s)	703, 1170
Eam1104I	CTCTTC	3 cut(s)	66, 297, 645
EarI	CTCTTC	3 cut(s)	66, 297, 645
Ecl136II	GAGCTC	1 cut(s)	1886
Eco130I	CCWWGG	3 cut(s)	1084, 1114, 1129
Eco24I	GRGCYC	1 cut(s)	1888
Eco31I	GGTCTC	2 cut(s)	29, 2051
Eco53kI	GAGCTC	1 cut(s)	1886
Eco57I	CTGAAG	1 cut(s)	1676
Eco91I	GGTNACC	1 cut(s)	778
EcoICRI	GAGCTC	1 cut(s)	1886
EcoO65I	GGTNACC	1 cut(s)	778
EcoRI	GAATTC	1 cut(s)	1270
EcoRII	CCWGG	1 cut(s)	37
EcoT14I	CCWWGG	3 cut(s)	1084, 1114, 1129
EcoT38I	GRGCYC	1 cut(s)	1888
ErhI	CCWWGG	3 cut(s)	1084, 1114, 1129
FaqI	GGGAC	2 cut(s)	1440, 1862
FauNDI	CATATG	1 cut(s)	1438
FblI	GTMKAC	1 cut(s)	48
Fnu4HI	GCNGC	4 cut(s)	633, 904, 1037, 1692
FokI	GGATG	4 cut(s)	773, 1232, 1892, 2085
FriOI	GRGCYC	1 cut(s)	1888
FseI	GGCCGGCC	1 cut(s)	564
Fsp4HI	GCNGC	4 cut(s)	633, 904, 1037, 1692
FspBI	CTAG	3 cut(s)	981, 1055, 1377
FspI	TGCGCA	1 cut(s)	619
GlaI	GCGC	3 cut(s)	619, 902, 1317
GluI	GCNGC	4 cut(s)	633, 904, 1037, 1692
GsuI	CTGGAG	1 cut(s)	1340
HaeIII	GGCC	7 cut(s)	11, 42, 560, 564, 705, 1113, 1172
HapII	CCGG	6 cut(s)	258, 561, 918, 1815, 1974, 2061
HgaI	GACGC	1 cut(s)	1838
HhaI	GCGC	3 cut(s)	620, 903, 1318
Hin6I	GCGC	3 cut(s)	618, 901, 1316
HinP1I	GCGC	3 cut(s)	618, 901, 1316
HincII	GTYRAC	2 cut(s)	265, 1155
HindII	GTYRAC	2 cut(s)	265, 1155
HindIII	AAGCTT	3 cut(s)	99, 174, 1922
HinfI	GANTC	8 cut(s)	235, 270, 569, 575, 818, 914, 1163, 1361
HpaII	CCGG	6 cut(s)	258, 561, 918, 1815, 1974, 2061
HphI	GGTGA	5 cut(s)	671, 790, 1024, 1930, 2078
Hpy166II	GTNNAC	5 cut(s)	49, 265, 1155, 1382, 1500
Hpy188I	TCNGA	6 cut(s)	336, 574, 948, 1240, 1335, 1636
Hpy8I	GTNNAC	5 cut(s)	49, 265, 1155, 1382, 1500
Hpy99I	CGWCG	1 cut(s)	1832
HpyAV	CCTTC	5 cut(s)	803, 1296, 1454, 1741, 2010
HpyCH4III	ACNGT	8 cut(s)	410, 498, 784, 1257, 1523, 1604, 1784, 1964
HpyCH4IV	ACGT	1 cut(s)	745
HpyF10VI	GCNNNNNNNGC	1 cut(s)	1688
HpyF3I	CTNAG	7 cut(s)	333, 357, 945, 1239, 1332, 1445, 1585
HpySE526I	ACGT	1 cut(s)	745
HspAI	GCGC	3 cut(s)	618, 901, 1316
Kpn2I	TCCGGA	1 cut(s)	917
KpnI	GGTACC	1 cut(s)	497
KroI	GCCGGC	2 cut(s)	560, 1973
KroNI	GCCGGC	2 cut(s)	562, 1975
Kzo9I	GATC	5 cut(s)	148, 298, 690, 811, 1581
LguI	GCTCTTC	1 cut(s)	297
LmnI	GCTCC	2 cut(s)	171, 1883
Lsp1109I	GCAGC	1 cut(s)	1023
LweI	GCATC	5 cut(s)	1048, 1210, 1233, 1303, 1914
MaeI	CTAG	3 cut(s)	981, 1055, 1377
MaeII	ACGT	1 cut(s)	745
MaeIII	GTNAC	3 cut(s)	659, 778, 1133
MalI	GATC	5 cut(s)	150, 300, 692, 813, 1583
MboI	GATC	5 cut(s)	148, 298, 690, 811, 1581
MhlI	GDGCHC	1 cut(s)	1888
MlsI	TGGCCA	1 cut(s)	705
MluNI	TGGCCA	1 cut(s)	705
MlyI	GAGTC	1 cut(s)	827
MmeI	TCCRAC	3 cut(s)	408, 1456, 1803
Mox20I	TGGCCA	1 cut(s)	705
MroI	TCCGGA	1 cut(s)	917
MroNI	GCCGGC	2 cut(s)	560, 1973
MroXI	GAANNNNTTC	1 cut(s)	341
MscI	TGGCCA	1 cut(s)	705
MseI	TTAA	3 cut(s)	200, 555, 741
MslI	CAYNNNNRTG	3 cut(s)	831, 1437, 2096
Msp20I	TGGCCA	1 cut(s)	705
MspA1I	CMGCKG	1 cut(s)	1160
MspI	CCGG	6 cut(s)	258, 561, 918, 1815, 1974, 2061
MspR9I	CCNGG	1 cut(s)	39
MssI	GTTTAAAC	1 cut(s)	742
Mva1269I	GAATGC	4 cut(s)	385, 595, 1077, 1900
MvaI	CCWGG	1 cut(s)	39
MvnI	CGCG	3 cut(s)	901, 903, 1874
MwoI	GCNNNNNNNGC	1 cut(s)	1688
NaeI	GCCGGC	2 cut(s)	562, 1975
NcoI	CCATGG	2 cut(s)	1084, 1129
NdeI	CATATG	1 cut(s)	1438
NdeII	GATC	5 cut(s)	148, 298, 690, 811, 1581
NgoMIV	GCCGGC	2 cut(s)	560, 1973
NlaIV	GGNNCC	1 cut(s)	495
NmuCI	GTSAC	2 cut(s)	659, 778
NsbI	TGCGCA	1 cut(s)	619
NspI	RCATGY	2 cut(s)	1195, 1498
NspV	TTCGAA	1 cut(s)	420
PciI	ACATGT	1 cut(s)	1494
PciSI	GCTCTTC	1 cut(s)	297
PctI	GAATGC	4 cut(s)	385, 595, 1077, 1900
PdiI	GCCGGC	2 cut(s)	562, 1975
PdmI	GAANNNNTTC	1 cut(s)	341
PfeI	GAWTC	7 cut(s)	235, 270, 569, 575, 914, 1163, 1361
PflFI	GACNNNGTC	1 cut(s)	1353
PkrI	GCNGC	4 cut(s)	634, 905, 1038, 1693
PleI	GAGTC	1 cut(s)	826
PmeI	GTTTAAAC	1 cut(s)	742
PpsI	GAGTC	1 cut(s)	826
PscI	ACATGT	1 cut(s)	1494
Psp124BI	GAGCTC	1 cut(s)	1888
Psp6I	CCWGG	1 cut(s)	37
PspEI	GGTNACC	1 cut(s)	778
PspGI	CCWGG	1 cut(s)	37
PspN4I	GGNNCC	1 cut(s)	495
PspPI	GGNCC	1 cut(s)	9
PstI	CTGCAG	1 cut(s)	1041
PstNI	CAGNNNCTG	2 cut(s)	340, 821
PsyI	GACNNNGTC	1 cut(s)	1353
RigI	GGCCGGCC	1 cut(s)	564
RsaI	GTAC	8 cut(s)	125, 286, 495, 1196, 1409, 1443, 1499, 1699
RsaNI	GTAC	8 cut(s)	124, 285, 494, 1195, 1408, 1442, 1498, 1698
RseI	CAYNNNNRTG	3 cut(s)	831, 1437, 2096
SacI	GAGCTC	1 cut(s)	1888
SapI	GCTCTTC	1 cut(s)	297
SaqAI	TTAA	3 cut(s)	200, 555, 741
SatI	GCNGC	4 cut(s)	633, 904, 1037, 1692
Sau3AI	GATC	5 cut(s)	148, 298, 690, 811, 1581
Sau96I	GGNCC	1 cut(s)	9
ScaI	AGTACT	1 cut(s)	1409
SchI	GAGTC	1 cut(s)	827
ScrFI	CCNGG	1 cut(s)	39
SduI	GDGCHC	1 cut(s)	1888
SfaNI	GCATC	5 cut(s)	1048, 1210, 1233, 1303, 1914
SfcI	CTRYAG	1 cut(s)	1037
SfuI	TTCGAA	1 cut(s)	420
SmiI	ATTTAAAT	1 cut(s)	201
SmiMI	CAYNNNNRTG	3 cut(s)	831, 1437, 2096
SmlI	CTYRAG	1 cut(s)	1198
SmoI	CTYRAG	1 cut(s)	1198
SsiI	CCGC	6 cut(s)	632, 903, 989, 1158, 1692, 1874
SspMI	CTAG	3 cut(s)	981, 1055, 1377
SstI	GAGCTC	1 cut(s)	1888
StyD4I	CCNGG	1 cut(s)	37
StyI	CCWWGG	3 cut(s)	1084, 1114, 1129
SwaI	ATTTAAAT	1 cut(s)	201
TaaI	ACNGT	8 cut(s)	410, 498, 784, 1257, 1523, 1604, 1784, 1964
TaiI	ACGT	1 cut(s)	748
TaqI	TCGA	4 cut(s)	345, 401, 420, 602
TaqII	GACCGA	1 cut(s)	282
TatI	WGTACW	5 cut(s)	1194, 1407, 1441, 1497, 1697
TauI	GCSGC	3 cut(s)	635, 906, 1694
TfiI	GAWTC	7 cut(s)	235, 270, 569, 575, 914, 1163, 1361
Tru1I	TTAA	3 cut(s)	200, 555, 741
Tru9I	TTAA	3 cut(s)	200, 555, 741
TscAI	CASTG	3 cut(s)	390, 1068, 1787
TseFI	GTSAC	2 cut(s)	659, 778
TseI	GCWGC	1 cut(s)	1036
Tsp45I	GTSAC	2 cut(s)	659, 778
TspDTI	ATGAA	9 cut(s)	17, 227, 323, 530, 1064, 1352, 1421, 1706, 1760
TspGWI	ACGGA	1 cut(s)	1152
TspRI	CASTG	3 cut(s)	390, 1068, 1787
Tth111I	GACNNNGTC	1 cut(s)	1353
XapI	RAATTY	4 cut(s)	67, 202, 1270, 1415
XceI	RCATGY	2 cut(s)	1195, 1498
XmiI	GTMKAC	1 cut(s)	48
XmnI	GAANNNNTTC	1 cut(s)	341
XspI	CTAG	3 cut(s)	981, 1055, 1377
ZrmI	AGTACT	1 cut(s)	1409

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.