FvH4_2g36570

Oligouridylate-binding protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
OG0014674
Physical Location & Seq
Reverse (-)
26743247 .. 26748018
4772 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g36570.t2

Sequence Viewer

Length: 1224 bp
ATGCAACAGCAGCAACAAGAGGCCATAATGCAGCAAGCTCTGCTTCAACAGCAGCAACAGCACATGTACCATCCTGGTGTTCTTGCAGCTGCTATGTCTCAGATGGAGCCTATCCCAAGTGGAAATTTGCCTCCAGGCTTTGACCCGTCCACATGCCACAGTGTGTATGTCGGAAATATTCATGTTAATGTCACCGAGAAGCTTCTTGCTGAAGTTTTCCAGAGCGTTGGTCCTCTTGCAGGATGCAAACTCATTAGAAAGGATAAGTCGTCATATGGATTTGTTGATTACCTTGATCGAACTTCTGCAGCCCTTGCAATAATGAGTTTACATGGACGCCAACTTTATGGCCTGGCACTTAAGGTGAACTGGGCATATGCCAATAGCCAGAGGGAAGATACTTCAGGGCACTACAATATATTTGTTGGTGATCTTAGTCCAGAGATTACAGATGCAACTTTATTTGCTTGCTTCTCGGTCTATCCTAGTTGTTCTGACGCAAGGGTCATGTGGGATCACAAAACTGGCCGCTCAAAAGGATATGGATTTGTATCTTTCCGTAACCAGCAGGATGCTCAGAGTGCTATCAATGATTTATCGGGTAAATGGCTTGGAAACAGGCAAATAAGATGCAACTGGGCAACTAAAAGTGCTAGTTCCAGTGAAGAAAAGCAGAGTAATGACACACAAAATGCAGTTGTACTGACAAATGAATCTTCAGATGGAGGTCAGGAGAACTCCAATGAAGAGGCCCCAGAAAATAATCTAGCATATACGACTGTCTATGTTGGCAACCTTCCCCATGAGATCACTCAAGCTGAACTTCACAGTCAGTTTCATGCTCTTGGGGCTGGGGTTATTGAGGAAGTGCGAGTGCAGAGGGATAAAGGTTTTGGATTTGTGAGATACAACACCCATGATGAAGCTGCCATAGCCATCCAAATGGGTAATGGCAGGATAATTCGTGGAAAGTCTATGAAGTGCTCATGGGGTAGCAAGCCGACTCCACCTGGGTTACCTTCAAATCCTCTACCACCCCCTGCTCAACCCTATCAGATCCTTCCAAACGCTGCAATGAACCAAGGCTATTCTCCAGCTGAGTTGTTGGCTTATAGGCGTCAACTTGCCTTGAGTCAAGCTGCCATGAGCTCTGGTGGAAGCCAACCTATGTATGAGGGATATCCTAACACTTCATCTGGTCACCAGCTCATGTATTATCCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RRM_1

Protein Analysis

408

Amino Acids

44.69

Weight (kDa)

6.18

Isoelectric Point (pI)

50.38

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RRM_1 PF00076 55 - 120 3e-11 RNA recognition motif
RRM_1 PF00076 140 - 210 1.7e-18 RNA recognition motif
RRM_1 PF00076 261 - 326 3.6e-13 RNA recognition motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014674)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g36570 FvH4_2g36570 FvH4_2g36570
malus_domestica MD08G1125800.v1.1 MD15G1105600.v1.1
prunus_persica Prupe.1G457400_v2.0.a1
pyrus_communis pycom08g10490
rosa_chinensis RchiOBHm_Chr6g0305251
rosa_laevigata RLG00000010905
rosa_multiflora Rmu_ssc0000276.1_g000005
rosa_roxburghii Rroxscaffold_7G00163010
rosa_rugosa Rorug06G0339000
rosa_samantha Rh6AG450600 Rh6BG450800 Rh6CG464600 Rh6DG451200
rosa_wichuraiana Rw6G039270

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 503
AccBSI CCGCTC 1 cut(s) 531
AciI CCGC 1 cut(s) 529
AclWI GGATC 2 cut(s) 522, 1051
AcoI YGGCCR 1 cut(s) 526
AcsI RAATTY 1 cut(s) 124
AcuI CTGAAG 3 cut(s) 231, 387, 702
AcyI GRCGYC 2 cut(s) 337, 1117
AdeI CACNNNGTG 1 cut(s) 163
AfaI GTAC 2 cut(s) 68, 702
AfiI CCNNNNNNNGG 1 cut(s) 239
AflII CTTAAG 1 cut(s) 359
AflIII ACRYGT 1 cut(s) 63
AgsI TTSAA 2 cut(s) 47, 1023
AjnI CCWGG 4 cut(s) 73, 133, 351, 1009
AluBI AGCT 9 cut(s) 38, 89, 202, 818, 926, 1097, 1139, 1149, 1207
AluI AGCT 9 cut(s) 38, 89, 202, 818, 926, 1097, 1139, 1149, 1207
Alw21I GWGCWC 2 cut(s) 986, 1151
Alw26I GTCTC 1 cut(s) 102
AlwI GGATC 2 cut(s) 522, 1051
AoxI GGCC 4 cut(s) 21, 349, 526, 750
ApeKI GCWGC 9 cut(s) 10, 31, 52, 86, 89, 308, 926, 1070, 1139
ApoI RAATTY 1 cut(s) 124
AspS9I GGNCC 2 cut(s) 230, 751
AsuHPI GGTGA 4 cut(s) 184, 376, 440, 1193
AvaII GGWCC 1 cut(s) 230
BaeGI GKGCMC 1 cut(s) 411
BanII GRGCYC 1 cut(s) 1151
Bbv12I GWGCWC 2 cut(s) 986, 1151
BbvI GCAGC 9 cut(s) 22, 43, 64, 76, 98, 320, 913, 1057, 1126
BccI CCATC 4 cut(s) 78, 97, 716, 944
BciT130I CCWGG 4 cut(s) 75, 135, 353, 1011
BcoDI GTCTC 1 cut(s) 102
BfaI CTAG 3 cut(s) 486, 654, 767
BfmI CTRYAG 1 cut(s) 306
BfrI CTTAAG 1 cut(s) 359
Bme1390I CCNGG 4 cut(s) 75, 135, 353, 1011
Bme18I GGWCC 1 cut(s) 230
BmgT120I GGNCC 2 cut(s) 230, 751
BmiI GGNNCC 2 cut(s) 108, 753
BmrFI CCNGG 4 cut(s) 75, 135, 353, 1011
BmrI ACTGGG 2 cut(s) 379, 646
BmsI GCATC 4 cut(s) 233, 442, 562, 620
BmuI ACTGGG 2 cut(s) 379, 646
BpmI CTGGAG 2 cut(s) 117, 1077
BpuEI CTTGAG 2 cut(s) 798, 1150
BsaBI GATNNNNATC 1 cut(s) 550
BsaHI GRCGYC 2 cut(s) 337, 1117
BsaJI CCNNGG 2 cut(s) 1010, 1081
Bsc4I CCNNNNNNNGG 1 cut(s) 239
Bse1I ACTGG 4 cut(s) 374, 529, 641, 660
Bse3DI GCAATG 1 cut(s) 1080
Bse8I GATNNNNATC 1 cut(s) 550
BseBI CCWGG 4 cut(s) 75, 135, 353, 1011
BseDI CCNNGG 2 cut(s) 1010, 1081
BseGI GGATG 4 cut(s) 70, 248, 577, 936
BseJI GATNNNNATC 1 cut(s) 550
BseLI CCNNNNNNNGG 1 cut(s) 239
BseMI GCAATG 1 cut(s) 1080
BseMII CTCAG 3 cut(s) 113, 590, 1089
BseNI ACTGG 4 cut(s) 374, 529, 641, 660
BseSI GKGCMC 1 cut(s) 411
BseXI GCAGC 9 cut(s) 22, 43, 64, 76, 98, 320, 913, 1057, 1126
BseYI CCCAGC 1 cut(s) 851
BsgI GTGCAG 1 cut(s) 896
BshFI GGCC 4 cut(s) 23, 351, 528, 752
BsiHKAI GWGCWC 2 cut(s) 986, 1151
BslI CCNNNNNNNGG 1 cut(s) 239
BsmAI GTCTC 1 cut(s) 102
BsnI GGCC 4 cut(s) 23, 351, 528, 752
Bsp1286I GDGCHC 3 cut(s) 411, 986, 1151
Bsp143I GATC 5 cut(s) 295, 430, 514, 807, 1056
BspACI CCGC 1 cut(s) 529
BspANI GGCC 4 cut(s) 23, 351, 528, 752
BspCNI CTCAG 3 cut(s) 112, 589, 1090
BspLI GGNNCC 2 cut(s) 108, 753
BspMAI CTGCAG 1 cut(s) 310
BspPI GGATC 2 cut(s) 522, 1051
BspTI CTTAAG 1 cut(s) 359
BsrBI CCGCTC 1 cut(s) 531
BsrDI GCAATG 1 cut(s) 1080
BsrI ACTGG 4 cut(s) 374, 529, 641, 660
BssECI CCNNGG 2 cut(s) 1010, 1081
BssMI GATC 5 cut(s) 295, 430, 514, 807, 1056
BssNI GRCGYC 2 cut(s) 337, 1117
BssT1I CCWWGG 1 cut(s) 1081
Bst2UI CCWGG 4 cut(s) 75, 135, 353, 1011
Bst4CI ACNGT 3 cut(s) 161, 781, 830
Bst6I CTCTTC 1 cut(s) 741
BstACI GRCGYC 2 cut(s) 337, 1117
BstAFI CTTAAG 1 cut(s) 359
BstAPI GCANNNNNTGC 2 cut(s) 40, 314
BstC8I GCNNGC 3 cut(s) 36, 469, 998
BstDEI CTNAG 4 cut(s) 99, 434, 576, 1098
BstEII GGTNACC 2 cut(s) 1014, 1199
BstENI CCTNNNNNAGG 1 cut(s) 237
BstF5I GGATG 4 cut(s) 70, 248, 577, 936
BstKTI GATC 5 cut(s) 298, 433, 517, 810, 1059
BstMAI GTCTC 1 cut(s) 102
BstMBI GATC 5 cut(s) 295, 430, 514, 807, 1056
BstMWI GCNNNNNNNGC 8 cut(s) 10, 40, 49, 58, 314, 581, 848, 932
BstNI CCWGG 4 cut(s) 75, 135, 353, 1011
BstNSI RCATGY 2 cut(s) 67, 156
BstPI GGTNACC 2 cut(s) 1014, 1199
BstSCI CCNGG 4 cut(s) 73, 133, 351, 1009
BstSFI CTRYAG 1 cut(s) 306
BstSLI GKGCMC 1 cut(s) 411
BstV1I GCAGC 9 cut(s) 22, 43, 64, 76, 98, 320, 913, 1057, 1126
BstX2I RGATCY 1 cut(s) 1056
BstXI CCANNNNNNTGG 3 cut(s) 227, 347, 943
BstYI RGATCY 1 cut(s) 1056
BsuRI GGCC 4 cut(s) 23, 351, 528, 752
BtsCI GGATG 4 cut(s) 70, 248, 577, 936
BtsIMutI CAGTG 2 cut(s) 166, 667
Cac8I GCNNGC 3 cut(s) 36, 469, 998
Cfr13I GGNCC 2 cut(s) 230, 751
CseI GACGC 3 cut(s) 345, 506, 1106
Csp6I GTAC 2 cut(s) 67, 701
CviQI GTAC 2 cut(s) 67, 701
DdeI CTNAG 4 cut(s) 99, 434, 576, 1098
DpnI GATC 5 cut(s) 297, 432, 516, 809, 1058
DpnII GATC 5 cut(s) 295, 430, 514, 807, 1056
DraIII CACNNNGTG 1 cut(s) 163
DrdI GACNNNNNNGTC 1 cut(s) 503
DseDI GACNNNNNNGTC 1 cut(s) 503
EaeI YGGCCR 1 cut(s) 526
Eam1104I CTCTTC 1 cut(s) 741
EarI CTCTTC 1 cut(s) 741
Ecl136II GAGCTC 1 cut(s) 1149
Eco130I CCWWGG 1 cut(s) 1081
Eco24I GRGCYC 1 cut(s) 1151
Eco32I GATATC 1 cut(s) 1181
Eco47I GGWCC 1 cut(s) 230
Eco53kI GAGCTC 1 cut(s) 1149
Eco57I CTGAAG 3 cut(s) 231, 387, 702
Eco91I GGTNACC 2 cut(s) 1014, 1199
EcoICRI GAGCTC 1 cut(s) 1149
EcoNI CCTNNNNNAGG 1 cut(s) 237
EcoO109I RGGNCCY 1 cut(s) 751
EcoO65I GGTNACC 2 cut(s) 1014, 1199
EcoRII CCWGG 4 cut(s) 73, 133, 351, 1009
EcoRV GATATC 1 cut(s) 1181
EcoT14I CCWWGG 1 cut(s) 1081
EcoT38I GRGCYC 1 cut(s) 1151
ErhI CCWWGG 1 cut(s) 1081
FalI AAGNNNNNCTT 4 cut(s) 27, 59, 807, 839
FauNDI CATATG 2 cut(s) 274, 376
FokI GGATG 4 cut(s) 57, 255, 584, 923
FriOI GRGCYC 1 cut(s) 1151
FspBI CTAG 3 cut(s) 486, 654, 767
GsaI CCCAGC 1 cut(s) 855
GsuI CTGGAG 2 cut(s) 117, 1077
HaeIII GGCC 4 cut(s) 23, 351, 528, 752
HgaI GACGC 3 cut(s) 345, 506, 1106
Hin1I GRCGYC 2 cut(s) 337, 1117
HincII GTYRAC 1 cut(s) 1121
HindII GTYRAC 1 cut(s) 1121
HindIII AAGCTT 1 cut(s) 200
HinfI GANTC 3 cut(s) 713, 1003, 1132
HphI GGTGA 4 cut(s) 184, 376, 440, 1193
Hpy166II GTNNAC 4 cut(s) 150, 329, 367, 1121
Hpy188I TCNGA 6 cut(s) 102, 173, 496, 579, 721, 1056
Hpy188III TCNNGA 3 cut(s) 220, 440, 731
Hpy8I GTNNAC 4 cut(s) 150, 329, 367, 1121
HpyAV CCTTC 3 cut(s) 806, 1029, 1070
HpyCH4III ACNGT 3 cut(s) 161, 781, 830
HpyF10VI GCNNNNNNNGC 8 cut(s) 10, 40, 49, 58, 314, 581, 848, 932
HpyF3I CTNAG 4 cut(s) 99, 434, 576, 1098
Hsp92I GRCGYC 2 cut(s) 337, 1117
Kzo9I GATC 5 cut(s) 295, 430, 514, 807, 1056
LmnI GCTCC 1 cut(s) 106
Lsp1109I GCAGC 9 cut(s) 22, 43, 64, 76, 98, 320, 913, 1057, 1126
LweI GCATC 4 cut(s) 233, 442, 562, 620
MaeI CTAG 3 cut(s) 486, 654, 767
MaeIII GTNAC 4 cut(s) 190, 560, 1014, 1199
MalI GATC 5 cut(s) 297, 432, 516, 809, 1058
MbiI CCGCTC 1 cut(s) 531
MboI GATC 5 cut(s) 295, 430, 514, 807, 1056
MboII GAAGA 4 cut(s) 407, 677, 708, 758
MflI RGATCY 1 cut(s) 1056
MhlI GDGCHC 3 cut(s) 411, 986, 1151
MluCI AATT 2 cut(s) 124, 960
MlyI GAGTC 2 cut(s) 997, 1141
MmeI TCCRAC 1 cut(s) 151
MseI TTAA 2 cut(s) 186, 360
MslI CAYNNNNRTG 3 cut(s) 75, 186, 941
MspA1I CMGCKG 2 cut(s) 89, 1097
MspCI CTTAAG 1 cut(s) 359
MspR9I CCNGG 4 cut(s) 75, 135, 353, 1011
MvaI CCWGG 4 cut(s) 75, 135, 353, 1011
MwoI GCNNNNNNNGC 8 cut(s) 10, 40, 49, 58, 314, 581, 848, 932
NdeI CATATG 2 cut(s) 274, 376
NdeII GATC 5 cut(s) 295, 430, 514, 807, 1056
NlaIV GGNNCC 2 cut(s) 108, 753
NmuCI GTSAC 2 cut(s) 190, 1199
NspI RCATGY 2 cut(s) 67, 156
PciI ACATGT 1 cut(s) 63
PfeI GAWTC 1 cut(s) 713
PleI GAGTC 2 cut(s) 997, 1140
PpsI GAGTC 2 cut(s) 997, 1140
PscI ACATGT 1 cut(s) 63
Psp124BI GAGCTC 1 cut(s) 1151
Psp6I CCWGG 4 cut(s) 73, 133, 351, 1009
PspEI GGTNACC 2 cut(s) 1014, 1199
PspFI CCCAGC 1 cut(s) 851
PspGI CCWGG 4 cut(s) 73, 133, 351, 1009
PspN4I GGNNCC 2 cut(s) 108, 753
PspPI GGNCC 2 cut(s) 230, 751
PstI CTGCAG 1 cut(s) 310
PsuI RGATCY 1 cut(s) 1056
PvuII CAGCTG 2 cut(s) 89, 1097
RsaI GTAC 2 cut(s) 68, 702
RsaNI GTAC 2 cut(s) 67, 701
RseI CAYNNNNRTG 3 cut(s) 75, 186, 941
SacI GAGCTC 1 cut(s) 1151
SaqAI TTAA 2 cut(s) 186, 360
Sau3AI GATC 5 cut(s) 295, 430, 514, 807, 1056
Sau96I GGNCC 2 cut(s) 230, 751
SchI GAGTC 2 cut(s) 997, 1141
ScrFI CCNGG 4 cut(s) 75, 135, 353, 1011
SduI GDGCHC 3 cut(s) 411, 986, 1151
SfaNI GCATC 4 cut(s) 233, 442, 562, 620
SfcI CTRYAG 1 cut(s) 306
SinI GGWCC 1 cut(s) 230
SmiMI CAYNNNNRTG 3 cut(s) 75, 186, 941
SmlI CTYRAG 3 cut(s) 359, 813, 1129
SmoI CTYRAG 3 cut(s) 359, 813, 1129
Sse9I AATT 2 cut(s) 124, 960
SsiI CCGC 1 cut(s) 529
SspI AATATT 1 cut(s) 178
SspMI CTAG 3 cut(s) 486, 654, 767
SstI GAGCTC 1 cut(s) 1151
StyD4I CCNGG 4 cut(s) 73, 133, 351, 1009
StyI CCWWGG 1 cut(s) 1081
TaaI ACNGT 3 cut(s) 161, 781, 830
TaqI TCGA 1 cut(s) 298
TaqII GACCGA 1 cut(s) 466
TasI AATT 2 cut(s) 124, 960
TatI WGTACW 1 cut(s) 700
TauI GCSGC 1 cut(s) 531
TfiI GAWTC 1 cut(s) 713
Tru1I TTAA 2 cut(s) 186, 360
Tru9I TTAA 2 cut(s) 186, 360
TscAI CASTG 2 cut(s) 166, 667
TseFI GTSAC 2 cut(s) 190, 1199
TseI GCWGC 9 cut(s) 10, 31, 52, 86, 89, 308, 926, 1070, 1139
Tsp45I GTSAC 2 cut(s) 190, 1199
TspDTI ATGAA 8 cut(s) 170, 726, 759, 827, 936, 992, 1091, 1182
TspGWI ACGGA 1 cut(s) 548
TspRI CASTG 2 cut(s) 166, 667
Vha464I CTTAAG 1 cut(s) 359
VpaK11BI GGWCC 1 cut(s) 230
XagI CCTNNNNNAGG 1 cut(s) 237
XapI RAATTY 1 cut(s) 124
XceI RCATGY 2 cut(s) 67, 156
XcmI CCANNNNNNNNNTGG 1 cut(s) 947
XspI CTAG 3 cut(s) 486, 654, 767
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.