MD15G1105600.v1.1

Oligouridylate-binding protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr15
OG0014674
Physical Location & Seq
Reverse (-)
7377284 .. 7381724
4441 bp
Loading structure...
UTR
Exon/CDS
Intron
MD15G1105600.v1.1.491

Sequence Viewer

Length: 1212 bp
ATGCAGCAAGCACTTCTTCAGCAGCAACAACAACACATGTACCATCCTGGCGTGCTCGCTGCTGCCATGTCTCAGATGGAGCCTATCCCGAGTGGAAATCTGCCTCCCGGATTTGACCCGTCTCAGTGCAACAGTGTCTATGTTGGAAATATTCATGTAAATGTCACCGATAAGCTTCTAGCTGAAGTCTTCCAGAGTGTTGGTCCTCTTGCAGGATGCAAGCTCATAAAAAAGGATAAGTCGTCATATGGATTTATTGACTACCATGACCGACACTCTGCAGCCCTTGCAATAATGAATCTGCATGGACGCCAACTTTATGGTCAGGCACTTAAGGTGAATTGGGCATATGCCAATAACCAGAGGGAGGATACTTCAGGGCACTTCAACATATTTGTTGGTGATCTTAGTCCAGAGGTTACAGATGCAACTTTATTTGCTTGCTTCAGGGTCTACCCTAGTTGTTCTGATGCAAGGGTCATGTGGGATCACAAAACTGGCCGCTCGAAGGGATATGGCTTTGTTTCTTTCCGTGAACAGCAGGAAGCTCAGAGTGCTATCAATGATTTAACAGGTAAATGGCTTGGAAATAGGCAAATAAGGTGCAACTGGGCAACTAAAAGTGCTGGTTCTAGTGACGAGAAGCCGAGTAGTGACACTCAAAATGCCGTTGTACTTACAAATGGATCTTCAGATGGAGGTCTGGAGAACTCCAACGAAGAGGCCCCAGAAAACAATCAAGCATACACGACTGTCTATGTTGGCAACCTCTCCCATGAGGTTACTCAAGCTGAACTTCATAGTCAGTTTCATGCTCTTGGGGCTGGGGTTATTGAGGAAGTACGTGTGCAGAGGGATAAAGGTTTTGGATTTGTGAGATACAACACCCATGATGAAGCAGCCTTGGCTATTCAATTGGGAAATGGCAGGATAATTCATGGAAAGTCCATGAAGTGCTCGTGGGGTAGCAAACCAACTCCTGCCGGGATAGCTTCTAATCCACTACCTCCTCCTGCCCAGCCCTATCAGATTCTTCCAACTGCCGGTATAAACCAAGGCTATTCTCCAGCTGACTTGATGGCTTATCGGCGGCAACTTGCCTTGAGCCAGGCTGCTGCCACGTCCATGGCCTTGAACTCCGGCGGGTCCCAACCTATGTATGATGCCTATCCTAATAGTTCATCGGGCAACCAGTTAATGTATTACCGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RRM_1

Protein Analysis

404

Amino Acids

43.96

Weight (kDa)

6.49

Isoelectric Point (pI)

37.58

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RRM_1 PF00076 46 - 112 1.5e-11 RNA recognition motif
RRM_1 PF00076 131 - 201 2.8e-17 RNA recognition motif
RRM_1 PF00076 252 - 317 3.4e-12 RNA recognition motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014674)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g36570 FvH4_2g36570 FvH4_2g36570
malus_domestica MD08G1125800.v1.1 MD15G1105600.v1.1
prunus_persica Prupe.1G457400_v2.0.a1
pyrus_communis pycom08g10490
rosa_chinensis RchiOBHm_Chr6g0305251
rosa_laevigata RLG00000010905
rosa_multiflora Rmu_ssc0000276.1_g000005
rosa_roxburghii Rroxscaffold_7G00163010
rosa_rugosa Rorug06G0339000
rosa_samantha Rh6AG450600 Rh6BG450800 Rh6CG464600 Rh6DG451200
rosa_wichuraiana Rw6G039270

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 504
AccI GTMKAC 1 cut(s) 453
AciI CCGC 3 cut(s) 502, 1090, 1143
AclWI GGATC 2 cut(s) 495, 694
AcoI YGGCCR 1 cut(s) 499
AcuI CTGAAG 4 cut(s) 204, 360, 430, 675
AcyI GRCGYC 1 cut(s) 310
AfaI GTAC 3 cut(s) 41, 675, 843
AfiI CCNNNNNNNGG 4 cut(s) 212, 367, 508, 1043
AflII CTTAAG 1 cut(s) 332
AflIII ACRYGT 2 cut(s) 36, 844
AgsI TTSAA 3 cut(s) 388, 914, 1135
AjiI CACGTC 1 cut(s) 1122
AjnI CCWGG 2 cut(s) 46, 1107
AluBI AGCT 7 cut(s) 175, 182, 223, 548, 791, 992, 1070
AluI AGCT 7 cut(s) 175, 182, 223, 548, 791, 992, 1070
Alw21I GWGCWC 2 cut(s) 57, 959
Alw26I GTCTC 2 cut(s) 75, 126
AlwI GGATC 2 cut(s) 495, 694
Ama87I CYCGRG 1 cut(s) 88
AoxI GGCC 3 cut(s) 499, 723, 1128
ApeKI GCWGC 8 cut(s) 4, 22, 59, 62, 281, 899, 1112, 1115
AspS9I GGNCC 3 cut(s) 203, 724, 1146
AsuC2I CCSGG 2 cut(s) 108, 985
AsuHPI GGTGA 3 cut(s) 157, 349, 413
AvaI CYCGRG 1 cut(s) 88
AvaII GGWCC 2 cut(s) 203, 1146
BaeGI GKGCMC 1 cut(s) 384
BaeI ACNNNNGTAYC 2 cut(s) 23, 56
BauI CACGAG 1 cut(s) 958
BbsI GAAGAC 1 cut(s) 181
Bbv12I GWGCWC 2 cut(s) 57, 959
BbvI GCAGC 8 cut(s) 16, 34, 46, 49, 293, 911, 1099, 1102
BccI CCATC 4 cut(s) 51, 70, 689, 1072
BceAI ACGGC 1 cut(s) 653
BciT130I CCWGG 2 cut(s) 48, 1109
BciVI GTATCC 1 cut(s) 364
BcnI CCSGG 2 cut(s) 108, 985
BcoDI GTCTC 2 cut(s) 75, 126
BfaI CTAG 3 cut(s) 179, 459, 633
BfmI CTRYAG 1 cut(s) 279
BfrI CTTAAG 1 cut(s) 332
BfuI GTATCC 1 cut(s) 364
Bme1390I CCNGG 4 cut(s) 48, 108, 985, 1109
Bme18I GGWCC 2 cut(s) 203, 1146
BmeT110I CYCGRG 1 cut(s) 88
BmgBI CACGTC 1 cut(s) 1122
BmgT120I GGNCC 3 cut(s) 203, 724, 1146
BmiI GGNNCC 4 cut(s) 81, 726, 1147, 1148
BmrFI CCNGG 4 cut(s) 48, 108, 985, 1109
BmrI ACTGGG 1 cut(s) 619
BmsI GCATC 4 cut(s) 206, 415, 460, 1153
BmuI ACTGGG 1 cut(s) 619
BpiI GAAGAC 1 cut(s) 181
BpmI CTGGAG 2 cut(s) 725, 1050
BpuEI CTTGAG 2 cut(s) 771, 1123
BpuMI CCSGG 2 cut(s) 108, 985
BsaAI YACGTR 1 cut(s) 845
BsaBI GATNNNNATC 1 cut(s) 1167
BsaHI GRCGYC 1 cut(s) 310
BsaJI CCNNGG 3 cut(s) 903, 1054, 1125
Bsc4I CCNNNNNNNGG 4 cut(s) 212, 367, 508, 1043
Bse118I RCCGGY 1 cut(s) 1043
Bse1I ACTGG 3 cut(s) 502, 614, 1192
Bse8I GATNNNNATC 1 cut(s) 1167
BseBI CCWGG 2 cut(s) 48, 1109
BseDI CCNNGG 3 cut(s) 903, 1054, 1125
BseGI GGATG 2 cut(s) 43, 221
BseJI GATNNNNATC 1 cut(s) 1167
BseLI CCNNNNNNNGG 4 cut(s) 212, 367, 508, 1043
BseMII CTCAG 3 cut(s) 86, 137, 563
BseNI ACTGG 3 cut(s) 502, 614, 1192
BseRI GAGGAG 1 cut(s) 999
BseSI GKGCMC 1 cut(s) 384
BseXI GCAGC 8 cut(s) 16, 34, 46, 49, 293, 911, 1099, 1102
BseYI CCCAGC 2 cut(s) 824, 1017
BsgI GTGCAG 1 cut(s) 869
BshFI GGCC 3 cut(s) 501, 725, 1130
BsiHKAI GWGCWC 2 cut(s) 57, 959
BsiHKCI CYCGRG 1 cut(s) 88
BsiSI CCGG 4 cut(s) 108, 984, 1044, 1140
BslFI GGGAC 1 cut(s) 1132
BslI CCNNNNNNNGG 4 cut(s) 212, 367, 508, 1043
BsmAI GTCTC 2 cut(s) 75, 126
BsmBI CGTCTC 1 cut(s) 126
BsmFI GGGAC 1 cut(s) 1132
BsnI GGCC 3 cut(s) 501, 725, 1130
BsoBI CYCGRG 1 cut(s) 88
Bsp1286I GDGCHC 3 cut(s) 57, 384, 959
Bsp143I GATC 3 cut(s) 403, 487, 686
Bsp19I CCATGG 1 cut(s) 1125
BspACI CCGC 3 cut(s) 502, 1090, 1143
BspANI GGCC 3 cut(s) 501, 725, 1130
BspCNI CTCAG 3 cut(s) 85, 136, 562
BspLI GGNNCC 4 cut(s) 81, 726, 1147, 1148
BspMAI CTGCAG 1 cut(s) 283
BspPI GGATC 2 cut(s) 495, 694
BspTI CTTAAG 1 cut(s) 332
BsrBI CCGCTC 1 cut(s) 504
BsrFI RCCGGY 1 cut(s) 1043
BsrI ACTGG 3 cut(s) 502, 614, 1192
BssAI RCCGGY 1 cut(s) 1043
BssECI CCNNGG 3 cut(s) 903, 1054, 1125
BssMI GATC 3 cut(s) 403, 487, 686
BssNI GRCGYC 1 cut(s) 310
BssSI CACGAG 1 cut(s) 958
BssT1I CCWWGG 3 cut(s) 903, 1054, 1125
Bst2BI CACGAG 1 cut(s) 958
Bst2UI CCWGG 2 cut(s) 48, 1109
Bst4CI ACNGT 3 cut(s) 134, 754, 1208
Bst6I CTCTTC 1 cut(s) 714
BstACI GRCGYC 1 cut(s) 310
BstAFI CTTAAG 1 cut(s) 332
BstAPI GCANNNNNTGC 1 cut(s) 287
BstBAI YACGTR 1 cut(s) 845
BstC8I GCNNGC 5 cut(s) 9, 53, 57, 221, 442
BstDEI CTNAG 4 cut(s) 72, 123, 407, 549
BstDSI CCRYGG 1 cut(s) 1125
BstENI CCTNNNNNAGG 1 cut(s) 210
BstF5I GGATG 2 cut(s) 43, 221
BstKTI GATC 3 cut(s) 406, 490, 689
BstMAI GTCTC 2 cut(s) 75, 126
BstMBI GATC 3 cut(s) 403, 487, 686
BstMWI GCNNNNNNNGC 5 cut(s) 287, 554, 821, 905, 989
BstNI CCWGG 2 cut(s) 48, 1109
BstNSI RCATGY 1 cut(s) 40
BstSCI CCNGG 4 cut(s) 46, 106, 983, 1107
BstSFI CTRYAG 1 cut(s) 279
BstSLI GKGCMC 1 cut(s) 384
BstV1I GCAGC 8 cut(s) 16, 34, 46, 49, 293, 911, 1099, 1102
BstV2I GAAGAC 1 cut(s) 181
BstX2I RGATCY 1 cut(s) 686
BstXI CCANNNNNNTGG 3 cut(s) 200, 320, 1126
BstYI RGATCY 1 cut(s) 686
BsuI GTATCC 1 cut(s) 364
BsuRI GGCC 3 cut(s) 501, 725, 1130
BtgI CCRYGG 1 cut(s) 1125
BtrI CACGTC 1 cut(s) 1122
BtsCI GGATG 2 cut(s) 43, 221
BtsIMutI CAGTG 2 cut(s) 131, 139
Cac8I GCNNGC 5 cut(s) 9, 53, 57, 221, 442
Cfr10I RCCGGY 1 cut(s) 1043
Cfr13I GGNCC 3 cut(s) 203, 724, 1146
CseI GACGC 1 cut(s) 318
Csp6I GTAC 3 cut(s) 40, 674, 842
CviQI GTAC 3 cut(s) 40, 674, 842
DdeI CTNAG 4 cut(s) 72, 123, 407, 549
DpnI GATC 3 cut(s) 405, 489, 688
DpnII GATC 3 cut(s) 403, 487, 686
EaeI YGGCCR 1 cut(s) 499
Eam1104I CTCTTC 1 cut(s) 714
EarI CTCTTC 1 cut(s) 714
Eco130I CCWWGG 3 cut(s) 903, 1054, 1125
Eco47I GGWCC 2 cut(s) 203, 1146
Eco57I CTGAAG 4 cut(s) 204, 360, 430, 675
Eco88I CYCGRG 1 cut(s) 88
EcoNI CCTNNNNNAGG 1 cut(s) 210
EcoO109I RGGNCCY 2 cut(s) 724, 1146
EcoRII CCWGG 2 cut(s) 46, 1107
EcoT14I CCWWGG 3 cut(s) 903, 1054, 1125
ErhI CCWWGG 3 cut(s) 903, 1054, 1125
Esp3I CGTCTC 1 cut(s) 126
FalI AAGNNNNNCTT 3 cut(s) 32, 780, 812
FaqI GGGAC 1 cut(s) 1132
FauI CCCGC 1 cut(s) 1136
FauNDI CATATG 2 cut(s) 247, 349
FblI GTMKAC 1 cut(s) 453
FokI GGATG 2 cut(s) 30, 228
FspBI CTAG 3 cut(s) 179, 459, 633
GsaI CCCAGC 2 cut(s) 828, 1021
GsuI CTGGAG 2 cut(s) 725, 1050
HaeIII GGCC 3 cut(s) 501, 725, 1130
HapII CCGG 4 cut(s) 108, 984, 1044, 1140
HgaI GACGC 1 cut(s) 318
Hin1I GRCGYC 1 cut(s) 310
HindIII AAGCTT 1 cut(s) 173
HinfI GANTC 2 cut(s) 298, 1030
HpaII CCGG 4 cut(s) 108, 984, 1044, 1140
HphI GGTGA 3 cut(s) 157, 349, 413
Hpy166II GTNNAC 2 cut(s) 454, 536
Hpy188I TCNGA 5 cut(s) 75, 469, 552, 694, 1029
Hpy188III TCNNGA 4 cut(s) 88, 193, 413, 704
Hpy8I GTNNAC 2 cut(s) 454, 536
HpyAV CCTTC 1 cut(s) 502
HpyCH4III ACNGT 3 cut(s) 134, 754, 1208
HpyCH4IV ACGT 2 cut(s) 844, 1121
HpyF10VI GCNNNNNNNGC 5 cut(s) 287, 554, 821, 905, 989
HpyF3I CTNAG 4 cut(s) 72, 123, 407, 549
HpySE526I ACGT 2 cut(s) 844, 1121
Hsp92I GRCGYC 1 cut(s) 310
KflI GGGWCCC 1 cut(s) 1146
Kzo9I GATC 3 cut(s) 403, 487, 686
LmnI GCTCC 1 cut(s) 79
Lsp1109I GCAGC 8 cut(s) 16, 34, 46, 49, 293, 911, 1099, 1102
LweI GCATC 4 cut(s) 206, 415, 460, 1153
MaeI CTAG 3 cut(s) 179, 459, 633
MaeII ACGT 2 cut(s) 844, 1121
MaeIII GTNAC 5 cut(s) 163, 418, 635, 653, 781
MalI GATC 3 cut(s) 405, 489, 688
MbiI CCGCTC 1 cut(s) 504
MboI GATC 3 cut(s) 403, 487, 686
MboII GAAGA 5 cut(s) 8, 181, 681, 731, 1025
MfeI CAATTG 1 cut(s) 914
MflI RGATCY 1 cut(s) 686
MhlI GDGCHC 3 cut(s) 57, 384, 959
MluCI AATT 3 cut(s) 340, 914, 933
MmeI TCCRAC 3 cut(s) 124, 738, 1061
MseI TTAA 4 cut(s) 333, 569, 1196, 1210
MslI CAYNNNNRTG 2 cut(s) 159, 1124
MspA1I CMGCKG 1 cut(s) 1070
MspCI CTTAAG 1 cut(s) 332
MspI CCGG 4 cut(s) 108, 984, 1044, 1140
MspR9I CCNGG 4 cut(s) 48, 108, 985, 1109
MunI CAATTG 1 cut(s) 914
MvaI CCWGG 2 cut(s) 48, 1109
MwoI GCNNNNNNNGC 5 cut(s) 287, 554, 821, 905, 989
NciI CCSGG 2 cut(s) 108, 985
NcoI CCATGG 1 cut(s) 1125
NdeI CATATG 2 cut(s) 247, 349
NdeII GATC 3 cut(s) 403, 487, 686
NlaIV GGNNCC 4 cut(s) 81, 726, 1147, 1148
NmeAIII GCCGAG 1 cut(s) 672
NmuCI GTSAC 3 cut(s) 163, 635, 653
NspI RCATGY 1 cut(s) 40
PciI ACATGT 1 cut(s) 36
PfeI GAWTC 2 cut(s) 298, 1030
PfoI TCCNGGA 1 cut(s) 106
Ppu21I YACGTR 1 cut(s) 845
PpuMI RGGWCCY 1 cut(s) 1146
PscI ACATGT 1 cut(s) 36
Psp5II RGGWCCY 1 cut(s) 1146
Psp6I CCWGG 2 cut(s) 46, 1107
PspFI CCCAGC 2 cut(s) 824, 1017
PspGI CCWGG 2 cut(s) 46, 1107
PspN4I GGNNCC 4 cut(s) 81, 726, 1147, 1148
PspPI GGNCC 3 cut(s) 203, 724, 1146
PspPPI RGGWCCY 1 cut(s) 1146
PstI CTGCAG 1 cut(s) 283
PsuI RGATCY 1 cut(s) 686
PvuII CAGCTG 1 cut(s) 1070
RsaI GTAC 3 cut(s) 41, 675, 843
RsaNI GTAC 3 cut(s) 40, 674, 842
RseI CAYNNNNRTG 2 cut(s) 159, 1124
SaqAI TTAA 4 cut(s) 333, 569, 1196, 1210
Sau3AI GATC 3 cut(s) 403, 487, 686
Sau96I GGNCC 3 cut(s) 203, 724, 1146
ScrFI CCNGG 4 cut(s) 48, 108, 985, 1109
SduI GDGCHC 3 cut(s) 57, 384, 959
SfaNI GCATC 4 cut(s) 206, 415, 460, 1153
SfcI CTRYAG 1 cut(s) 279
SinI GGWCC 2 cut(s) 203, 1146
SmiMI CAYNNNNRTG 2 cut(s) 159, 1124
SmlI CTYRAG 3 cut(s) 332, 786, 1102
SmoI CTYRAG 3 cut(s) 332, 786, 1102
Sse9I AATT 3 cut(s) 340, 914, 933
SsiI CCGC 3 cut(s) 502, 1090, 1143
SspI AATATT 1 cut(s) 151
SspMI CTAG 3 cut(s) 179, 459, 633
StyD4I CCNGG 4 cut(s) 46, 106, 983, 1107
StyI CCWWGG 3 cut(s) 903, 1054, 1125
TaaI ACNGT 3 cut(s) 134, 754, 1208
TaiI ACGT 2 cut(s) 847, 1124
TaqI TCGA 1 cut(s) 506
TaqII GACCGA 1 cut(s) 285
TasI AATT 3 cut(s) 340, 914, 933
TatI WGTACW 1 cut(s) 673
TauI GCSGC 2 cut(s) 504, 1093
TfiI GAWTC 2 cut(s) 298, 1030
Tru1I TTAA 4 cut(s) 333, 569, 1196, 1210
Tru9I TTAA 4 cut(s) 333, 569, 1196, 1210
TscAI CASTG 2 cut(s) 131, 139
TseFI GTSAC 3 cut(s) 163, 635, 653
TseI GCWGC 8 cut(s) 4, 22, 59, 62, 281, 899, 1112, 1115
Tsp45I GTSAC 3 cut(s) 163, 635, 653
TspDTI ATGAA 8 cut(s) 143, 311, 788, 800, 909, 926, 965, 1170
TspGWI ACGGA 1 cut(s) 521
TspRI CASTG 2 cut(s) 131, 139
Vha464I CTTAAG 1 cut(s) 332
VpaK11BI GGWCC 2 cut(s) 203, 1146
XagI CCTNNNNNAGG 1 cut(s) 210
XceI RCATGY 1 cut(s) 40
XcmI CCANNNNNNNNNTGG 1 cut(s) 73
XmiI GTMKAC 1 cut(s) 453
XspI CTAG 3 cut(s) 179, 459, 633
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.