Rmu_ssc0000276.1_g000005

Oligouridylate-binding protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_ssc0000276.1
OG0014674
Physical Location & Seq
Forward (+)
25060 .. 31849
6790 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_ssc0000276.1_g000005.1.cds

Sequence Viewer

Length: 1395 bp
atgcaacagcagcaacaagaagccataatgcagcaagcgcttcttcaacagcagcaacagcacatgtaccatcctggtgttcttgcagctgctatgtctcagatggagcctatcccaagtggaaatctgcctccgggctttgacccgtctacgtgccacagtgtctatgtcggaaatattcatgttaatgtcaccgagaagcttcttgccgaagttttccagagcgttggtcctcttgcaggatgcaaactcatcagaaaggataagtcatcatatggatttgttgactaccttgatcggacttctgcaacccttgcaataatgagtttgcatggacgccaactttatggccttgcacttaaggtgaattgggcgtatgccaatagccagagggaagacacttcagggcactacaatatatttgttggtgatcttagtccagagattacagatgcaactttatttgcttgcttctcggtctatcctagttgttctgacgcaagggtcatgtgggatcacaaaactggccgctcaaaaggatatggctttgtttctttccgtaaccagcaggatgctcagagtgctatcaatgatttatccggtaaatggcttggaaacaggcaaataagatgcaactgggcaactaaaagtgctagttccagtgaagagaagcagagtattgacacacaaaatgcagttgtactgacaaatgaatcttcagatggaggtcaggagaactccaatgaagaggccccagaaaataatcaagcatatacgactgtctatgttggcaaccttccccatgagatcactcaagctgaacttcatagtcagtttcatgctcttggggctggggttattgaggaagtgcgtgtgcagagggataaaggttttggatttgtgagatacaacactcatgaagaagctgccatggcgatccaaatgggtaatggcaggataattcgtggaaagtccatgaagtgctcatggggtagcaagccgactccacctgggttaccttcgaatcctttaccaccccctgctcaaccctatcagatccttccaaatgctgctatgaaccaaggctattctccagccgagttgttggcttatcggcgtcaacttgccttaagtcaggctgccatgagctctggtggaactcaacctatgtatgagggatatcctaacacttcgtcagccttgtctccactagaagataagcgactggcatgcactccaccctcctggcgcgtctcccctcagcttctctttttgggccagctggaggcctgggtcatgggctcgggcagcatggtgactgagctgctatcctgggtcttccactgttctcttgccccaagcccggtggaaggagcaatttcacaattttggtga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RRM_1

Protein Analysis

464

Amino Acids

50.93

Weight (kDa)

5.96

Isoelectric Point (pI)

52.27

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014674)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g36570 FvH4_2g36570 FvH4_2g36570
malus_domestica MD08G1125800.v1.1 MD15G1105600.v1.1
prunus_persica Prupe.1G457400_v2.0.a1
pyrus_communis pycom08g10490
rosa_chinensis RchiOBHm_Chr6g0305251
rosa_laevigata RLG00000010905
rosa_multiflora Rmu_ssc0000276.1_g000005
rosa_roxburghii Rroxscaffold_7G00163010
rosa_rugosa Rorug06G0339000
rosa_samantha Rh6AG450600 Rh6BG450800 Rh6CG464600 Rh6DG451200
rosa_wichuraiana Rw6G039270

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 503
AccBSI CCGCTC 1 cut(s) 531
AccI GTMKAC 1 cut(s) 149
AccII CGCG 1 cut(s) 1251
AciI CCGC 1 cut(s) 529
AclWI GGATC 3 cut(s) 522, 931, 1051
AcoI YGGCCR 1 cut(s) 526
AcuI CTGAAG 2 cut(s) 387, 702
AcyI GRCGYC 2 cut(s) 337, 1117
AfaI GTAC 2 cut(s) 68, 702
AfeI AGCGCT 1 cut(s) 39
AfiI CCNNNNNNNGG 5 cut(s) 239, 606, 1285, 1363, 1370
AflII CTTAAG 2 cut(s) 359, 1129
AflIII ACRYGT 1 cut(s) 63
AgsI TTSAA 1 cut(s) 47
AjnI CCWGG 5 cut(s) 73, 1009, 1244, 1289, 1331
AluBI AGCT 8 cut(s) 89, 202, 818, 926, 1149, 1264, 1282, 1324
AluI AGCT 8 cut(s) 89, 202, 818, 926, 1149, 1264, 1282, 1324
Alw21I GWGCWC 2 cut(s) 986, 1151
Alw26I GTCTC 3 cut(s) 102, 1209, 1258
AlwI GGATC 3 cut(s) 522, 931, 1051
Ama87I CYCGRG 1 cut(s) 1303
Aor51HI AGCGCT 1 cut(s) 39
AoxI GGCC 5 cut(s) 349, 526, 750, 1276, 1287
AspLEI GCGC 2 cut(s) 40, 1251
AspS9I GGNCC 3 cut(s) 230, 751, 1276
AsuC2I CCSGG 2 cut(s) 135, 1364
AsuHPI GGTGA 4 cut(s) 184, 376, 440, 1327
AsuII TTCGAA 1 cut(s) 1022
AvaI CYCGRG 1 cut(s) 1303
AvaII GGWCC 1 cut(s) 230
BaeGI GKGCMC 1 cut(s) 411
BanII GRGCYC 2 cut(s) 1151, 1304
BbsI GAAGAC 2 cut(s) 402, 1330
Bbv12I GWGCWC 2 cut(s) 986, 1151
BbvCI CCTCAGC 1 cut(s) 1260
BccI CCATC 3 cut(s) 78, 97, 716
BcgI CGANNNNNNTGC 2 cut(s) 1212, 1246
BciT130I CCWGG 5 cut(s) 75, 1011, 1246, 1291, 1333
BcnI CCSGG 2 cut(s) 135, 1364
BcoDI GTCTC 3 cut(s) 102, 1209, 1258
BfaI CTAG 3 cut(s) 486, 654, 1211
BfoI RGCGCY 1 cut(s) 41
BfrI CTTAAG 2 cut(s) 359, 1129
Bme1390I CCNGG 7 cut(s) 75, 135, 1011, 1246, 1291, 1333, 1364
Bme18I GGWCC 1 cut(s) 230
BmeT110I CYCGRG 1 cut(s) 1303
BmgT120I GGNCC 3 cut(s) 230, 751, 1276
BmiI GGNNCC 2 cut(s) 108, 753
BmrFI CCNGG 7 cut(s) 75, 135, 1011, 1246, 1291, 1333, 1364
BmrI ACTGGG 1 cut(s) 646
BmsI GCATC 4 cut(s) 233, 442, 562, 620
BmuI ACTGGG 1 cut(s) 646
BpiI GAAGAC 2 cut(s) 402, 1330
BpmI CTGGAG 2 cut(s) 1077, 1304
Bpu10I CCTNAGC 1 cut(s) 1260
Bpu14I TTCGAA 1 cut(s) 1022
BpuEI CTTGAG 1 cut(s) 798
BpuMI CCSGG 2 cut(s) 135, 1364
BsaAI YACGTR 1 cut(s) 153
BsaHI GRCGYC 2 cut(s) 337, 1117
BsaJI CCNNGG 5 cut(s) 930, 1010, 1081, 1290, 1332
BsaWI WCCGGW 1 cut(s) 599
Bsc4I CCNNNNNNNGG 5 cut(s) 239, 606, 1285, 1363, 1370
Bse1I ACTGG 4 cut(s) 529, 641, 660, 1230
BseBI CCWGG 5 cut(s) 75, 1011, 1246, 1291, 1333
BseDI CCNNGG 5 cut(s) 930, 1010, 1081, 1290, 1332
BseGI GGATG 3 cut(s) 70, 248, 577
BseLI CCNNNNNNNGG 5 cut(s) 239, 606, 1285, 1363, 1370
BseMII CTCAG 4 cut(s) 113, 590, 1274, 1311
BseNI ACTGG 4 cut(s) 529, 641, 660, 1230
BseSI GKGCMC 1 cut(s) 411
BseYI CCCAGC 1 cut(s) 851
BsgI GTGCAG 1 cut(s) 896
Bsh1236I CGCG 1 cut(s) 1251
BshFI GGCC 5 cut(s) 351, 528, 752, 1278, 1289
BsiHKAI GWGCWC 2 cut(s) 986, 1151
BsiHKCI CYCGRG 1 cut(s) 1303
BsiSI CCGG 3 cut(s) 134, 600, 1364
BslI CCNNNNNNNGG 5 cut(s) 239, 606, 1285, 1363, 1370
BsmAI GTCTC 3 cut(s) 102, 1209, 1258
BsmBI CGTCTC 1 cut(s) 1258
BsnI GGCC 5 cut(s) 351, 528, 752, 1278, 1289
BsoBI CYCGRG 1 cut(s) 1303
Bsp119I TTCGAA 1 cut(s) 1022
Bsp1286I GDGCHC 4 cut(s) 411, 986, 1151, 1304
Bsp143I GATC 6 cut(s) 295, 430, 514, 807, 936, 1056
Bsp19I CCATGG 1 cut(s) 930
BspACI CCGC 1 cut(s) 529
BspANI GGCC 5 cut(s) 351, 528, 752, 1278, 1289
BspCNI CTCAG 4 cut(s) 112, 589, 1273, 1312
BspFNI CGCG 1 cut(s) 1251
BspHI TCATGA 1 cut(s) 916
BspLI GGNNCC 2 cut(s) 108, 753
BspPI GGATC 3 cut(s) 522, 931, 1051
BspT104I TTCGAA 1 cut(s) 1022
BspTI CTTAAG 2 cut(s) 359, 1129
BsrBI CCGCTC 1 cut(s) 531
BsrI ACTGG 4 cut(s) 529, 641, 660, 1230
BssECI CCNNGG 5 cut(s) 930, 1010, 1081, 1290, 1332
BssMI GATC 6 cut(s) 295, 430, 514, 807, 936, 1056
BssNI GRCGYC 2 cut(s) 337, 1117
BssT1I CCWWGG 2 cut(s) 930, 1081
Bst2UI CCWGG 5 cut(s) 75, 1011, 1246, 1291, 1333
Bst4CI ACNGT 3 cut(s) 161, 781, 1346
Bst6I CTCTTC 2 cut(s) 660, 741
BstACI GRCGYC 2 cut(s) 337, 1117
BstAFI CTTAAG 2 cut(s) 359, 1129
BstAPI GCANNNNNTGC 1 cut(s) 314
BstBAI YACGTR 1 cut(s) 153
BstBI TTCGAA 1 cut(s) 1022
BstC8I GCNNGC 5 cut(s) 36, 469, 998, 1231, 1280
BstDEI CTNAG 5 cut(s) 99, 434, 576, 1260, 1320
BstDSI CCRYGG 1 cut(s) 930
BstEII GGTNACC 1 cut(s) 1014
BstENI CCTNNNNNAGG 1 cut(s) 237
BstF5I GGATG 3 cut(s) 70, 248, 577
BstFNI CGCG 1 cut(s) 1251
BstH2I RGCGCY 1 cut(s) 41
BstHHI GCGC 2 cut(s) 40, 1251
BstKTI GATC 6 cut(s) 298, 433, 517, 810, 939, 1059
BstMAI GTCTC 3 cut(s) 102, 1209, 1258
BstMBI GATC 6 cut(s) 295, 430, 514, 807, 936, 1056
BstMWI GCNNNNNNNGC 8 cut(s) 10, 37, 58, 314, 581, 848, 932, 1308
BstNI CCWGG 5 cut(s) 75, 1011, 1246, 1291, 1333
BstNSI RCATGY 2 cut(s) 67, 1233
BstPI GGTNACC 1 cut(s) 1014
BstSCI CCNGG 7 cut(s) 73, 133, 1009, 1244, 1289, 1331, 1362
BstSLI GKGCMC 1 cut(s) 411
BstUI CGCG 1 cut(s) 1251
BstV2I GAAGAC 2 cut(s) 402, 1330
BstX2I RGATCY 1 cut(s) 1056
BstXI CCANNNNNNTGG 3 cut(s) 227, 347, 1245
BstYI RGATCY 1 cut(s) 1056
BsuRI GGCC 5 cut(s) 351, 528, 752, 1278, 1289
BtgI CCRYGG 1 cut(s) 930
BtsCI GGATG 3 cut(s) 70, 248, 577
BtsIMutI CAGTG 3 cut(s) 166, 667, 1342
Cac8I GCNNGC 5 cut(s) 36, 469, 998, 1231, 1280
CciI TCATGA 1 cut(s) 916
CfoI GCGC 2 cut(s) 40, 1251
Cfr13I GGNCC 3 cut(s) 230, 751, 1276
CseI GACGC 4 cut(s) 345, 506, 1106, 1240
Csp6I GTAC 2 cut(s) 67, 701
CspCI CAANNNNNGTGG 2 cut(s) 1347, 1382
CviQI GTAC 2 cut(s) 67, 701
DdeI CTNAG 5 cut(s) 99, 434, 576, 1260, 1320
DpnI GATC 6 cut(s) 297, 432, 516, 809, 938, 1058
DpnII GATC 6 cut(s) 295, 430, 514, 807, 936, 1056
DrdI GACNNNNNNGTC 1 cut(s) 503
DseDI GACNNNNNNGTC 1 cut(s) 503
EaeI YGGCCR 1 cut(s) 526
Eam1104I CTCTTC 2 cut(s) 660, 741
EarI CTCTTC 2 cut(s) 660, 741
Ecl136II GAGCTC 1 cut(s) 1149
Eco130I CCWWGG 2 cut(s) 930, 1081
Eco147I AGGCCT 1 cut(s) 1289
Eco24I GRGCYC 2 cut(s) 1151, 1304
Eco32I GATATC 1 cut(s) 1181
Eco47I GGWCC 1 cut(s) 230
Eco47III AGCGCT 1 cut(s) 39
Eco53kI GAGCTC 1 cut(s) 1149
Eco57I CTGAAG 2 cut(s) 387, 702
Eco88I CYCGRG 1 cut(s) 1303
Eco91I GGTNACC 1 cut(s) 1014
EcoICRI GAGCTC 1 cut(s) 1149
EcoNI CCTNNNNNAGG 1 cut(s) 237
EcoO109I RGGNCCY 1 cut(s) 751
EcoO65I GGTNACC 1 cut(s) 1014
EcoRII CCWGG 5 cut(s) 73, 1009, 1244, 1289, 1331
EcoRV GATATC 1 cut(s) 1181
EcoT14I CCWWGG 2 cut(s) 930, 1081
EcoT38I GRGCYC 2 cut(s) 1151, 1304
ErhI CCWWGG 2 cut(s) 930, 1081
Esp3I CGTCTC 1 cut(s) 1258
FalI AAGNNNNNCTT 4 cut(s) 27, 59, 807, 839
FauNDI CATATG 1 cut(s) 274
FblI GTMKAC 1 cut(s) 149
FokI GGATG 3 cut(s) 57, 255, 584
FriOI GRGCYC 2 cut(s) 1151, 1304
FspBI CTAG 3 cut(s) 486, 654, 1211
GlaI GCGC 2 cut(s) 39, 1250
GsaI CCCAGC 1 cut(s) 855
GsuI CTGGAG 2 cut(s) 1077, 1304
HaeII RGCGCY 1 cut(s) 41
HaeIII GGCC 5 cut(s) 351, 528, 752, 1278, 1289
HapII CCGG 3 cut(s) 134, 600, 1364
HgaI GACGC 4 cut(s) 345, 506, 1106, 1240
HhaI GCGC 2 cut(s) 40, 1251
Hin1I GRCGYC 2 cut(s) 337, 1117
Hin6I GCGC 2 cut(s) 38, 1249
HinP1I GCGC 2 cut(s) 38, 1249
HincII GTYRAC 2 cut(s) 286, 1121
HindII GTYRAC 2 cut(s) 286, 1121
HindIII AAGCTT 1 cut(s) 200
HinfI GANTC 3 cut(s) 713, 1003, 1024
HpaII CCGG 3 cut(s) 134, 600, 1364
HphI GGTGA 4 cut(s) 184, 376, 440, 1327
Hpy166II GTNNAC 3 cut(s) 150, 286, 1121
Hpy188I TCNGA 8 cut(s) 102, 173, 257, 300, 496, 579, 721, 1056
Hpy188III TCNNGA 4 cut(s) 220, 440, 731, 917
Hpy8I GTNNAC 3 cut(s) 150, 286, 1121
HpyAV CCTTC 4 cut(s) 806, 1029, 1070, 1364
HpyCH4III ACNGT 3 cut(s) 161, 781, 1346
HpyCH4IV ACGT 1 cut(s) 152
HpyF10VI GCNNNNNNNGC 8 cut(s) 10, 37, 58, 314, 581, 848, 932, 1308
HpyF3I CTNAG 5 cut(s) 99, 434, 576, 1260, 1320
HpySE526I ACGT 1 cut(s) 152
Hsp92I GRCGYC 2 cut(s) 337, 1117
HspAI GCGC 2 cut(s) 38, 1249
Kzo9I GATC 6 cut(s) 295, 430, 514, 807, 936, 1056
LmnI GCTCC 2 cut(s) 106, 1373
LweI GCATC 4 cut(s) 233, 442, 562, 620
MaeI CTAG 3 cut(s) 486, 654, 1211
MaeII ACGT 1 cut(s) 152
MaeIII GTNAC 4 cut(s) 190, 560, 1014, 1315
MalI GATC 6 cut(s) 297, 432, 516, 809, 938, 1058
MbiI CCGCTC 1 cut(s) 531
MboI GATC 6 cut(s) 295, 430, 514, 807, 936, 1056
MboII GAAGA 8 cut(s) 35, 407, 677, 708, 758, 932, 1226, 1330
MflI RGATCY 1 cut(s) 1056
MhlI GDGCHC 4 cut(s) 411, 986, 1151, 1304
MluCI AATT 4 cut(s) 367, 960, 1377, 1385
MlyI GAGTC 1 cut(s) 997
MmeI TCCRAC 1 cut(s) 151
MseI TTAA 3 cut(s) 186, 360, 1130
MslI CAYNNNNRTG 2 cut(s) 75, 186
MspA1I CMGCKG 2 cut(s) 89, 1282
MspCI CTTAAG 2 cut(s) 359, 1129
MspI CCGG 3 cut(s) 134, 600, 1364
MspR9I CCNGG 7 cut(s) 75, 135, 1011, 1246, 1291, 1333, 1364
MvaI CCWGG 5 cut(s) 75, 1011, 1246, 1291, 1333
MvnI CGCG 1 cut(s) 1251
MwoI GCNNNNNNNGC 8 cut(s) 10, 37, 58, 314, 581, 848, 932, 1308
NciI CCSGG 2 cut(s) 135, 1364
NcoI CCATGG 1 cut(s) 930
NdeI CATATG 1 cut(s) 274
NdeII GATC 6 cut(s) 295, 430, 514, 807, 936, 1056
NlaIV GGNNCC 2 cut(s) 108, 753
NmeAIII GCCGAG 1 cut(s) 1123
NmuCI GTSAC 2 cut(s) 190, 1315
NspI RCATGY 2 cut(s) 67, 1233
NspV TTCGAA 1 cut(s) 1022
PaeI GCATGC 1 cut(s) 1233
PagI TCATGA 1 cut(s) 916
PceI AGGCCT 1 cut(s) 1289
PciI ACATGT 1 cut(s) 63
PfeI GAWTC 2 cut(s) 713, 1024
PleI GAGTC 1 cut(s) 997
PpsI GAGTC 1 cut(s) 997
Ppu21I YACGTR 1 cut(s) 153
PscI ACATGT 1 cut(s) 63
Psp124BI GAGCTC 1 cut(s) 1151
Psp6I CCWGG 5 cut(s) 73, 1009, 1244, 1289, 1331
PspEI GGTNACC 1 cut(s) 1014
PspFI CCCAGC 1 cut(s) 851
PspGI CCWGG 5 cut(s) 73, 1009, 1244, 1289, 1331
PspN4I GGNNCC 2 cut(s) 108, 753
PspPI GGNCC 3 cut(s) 230, 751, 1276
PsuI RGATCY 1 cut(s) 1056
PvuII CAGCTG 2 cut(s) 89, 1282
RsaI GTAC 2 cut(s) 68, 702
RsaNI GTAC 2 cut(s) 67, 701
RseI CAYNNNNRTG 2 cut(s) 75, 186
SacI GAGCTC 1 cut(s) 1151
SaqAI TTAA 3 cut(s) 186, 360, 1130
Sau3AI GATC 6 cut(s) 295, 430, 514, 807, 936, 1056
Sau96I GGNCC 3 cut(s) 230, 751, 1276
SchI GAGTC 1 cut(s) 997
ScrFI CCNGG 7 cut(s) 75, 135, 1011, 1246, 1291, 1333, 1364
SduI GDGCHC 4 cut(s) 411, 986, 1151, 1304
SfaNI GCATC 4 cut(s) 233, 442, 562, 620
SfuI TTCGAA 1 cut(s) 1022
SinI GGWCC 1 cut(s) 230
SmiMI CAYNNNNRTG 2 cut(s) 75, 186
SmlI CTYRAG 3 cut(s) 359, 813, 1129
SmoI CTYRAG 3 cut(s) 359, 813, 1129
SphI GCATGC 1 cut(s) 1233
Sse9I AATT 4 cut(s) 367, 960, 1377, 1385
SseBI AGGCCT 1 cut(s) 1289
SsiI CCGC 1 cut(s) 529
SspI AATATT 1 cut(s) 178
SspMI CTAG 3 cut(s) 486, 654, 1211
SstI GAGCTC 1 cut(s) 1151
StuI AGGCCT 1 cut(s) 1289
StyD4I CCNGG 7 cut(s) 73, 133, 1009, 1244, 1289, 1331, 1362
StyI CCWWGG 2 cut(s) 930, 1081
TaaI ACNGT 3 cut(s) 161, 781, 1346
TaiI ACGT 1 cut(s) 155
TaqI TCGA 1 cut(s) 1022
TaqII GACCGA 1 cut(s) 466
TasI AATT 4 cut(s) 367, 960, 1377, 1385
TatI WGTACW 1 cut(s) 700
TauI GCSGC 1 cut(s) 531
TfiI GAWTC 2 cut(s) 713, 1024
Tru1I TTAA 3 cut(s) 186, 360, 1130
Tru9I TTAA 3 cut(s) 186, 360, 1130
TscAI CASTG 3 cut(s) 166, 667, 1349
TseFI GTSAC 2 cut(s) 190, 1315
Tsp45I GTSAC 2 cut(s) 190, 1315
TspDTI ATGAA 8 cut(s) 170, 726, 759, 815, 827, 933, 992, 1091
TspGWI ACGGA 1 cut(s) 548
TspRI CASTG 3 cut(s) 166, 667, 1349
Vha464I CTTAAG 2 cut(s) 359, 1129
VpaK11BI GGWCC 1 cut(s) 230
XagI CCTNNNNNAGG 1 cut(s) 237
XceI RCATGY 2 cut(s) 67, 1233
XcmI CCANNNNNNNNNTGG 1 cut(s) 947
XmiI GTMKAC 1 cut(s) 149
XspI CTAG 3 cut(s) 486, 654, 1211
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.