Rh6BG450800

Oligouridylate-binding protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6B
OG0014674
Physical Location & Seq
Reverse (-)
66486488 .. 66491035
4548 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6BG450800.1

Sequence Viewer

Length: 1032 bp
ATGCAACAGCAGCAACAAGAAGCCATAATGCAGCAAGCGCTTCTTCAACAGCAGCAACAGCACATGTACCATCCTGGTGTTCTTGCAGCTGCTATGTCTCAGATGGAGCCTATCCCAAGTGGAAATCTGCCTCCGGGCTTTGACCCGTCTACGTGCCACAGTGTCTATGTCGGAAATATTCATGTTAATGTCACCGAGAAGCTTCTTGCCGAAGTTTTCCAGAGCGTTGGTCCTCTTGCAGGATGCAAACTCATCAGAAAGGATAAGTCGTCATATGGATTTGTTGACTACCTTGATCGGACTTCTGCAGCCCTTGCAATAATGAGTTTGCATGGACGCCAACTTTACGGCCTTGCACTTAAGGTGAATTGGGCGTATGCCAATAGCCAGAGGGAAGACACTTCAGGGCACTACAATATATTTGTTGGTGATCTTAGTCCAGAGATTACAGATGCAACTTTATTTGCTTGCTTCTCGGTCTATCCTAGTTGTTCTGACGCAAGGGTCATGTGGGATCACAAAACTGGCCGCTCAAAAGGATATGGCTTTGTTTCTTTCCGTAACCAGCAGGATGCTCAGAGTGCTATCAATGATTTATCCGGTAAATGGCTTGGAAACAGGCAAATAAGATGCAACTGGGCAACTAAAAGTGCTAGTTCCAGTGAAGAGAAGCAGAGTAATGACACACAAAATGCAGTTGTACTGACAAATGAATCTTCAGATGGAGGTCAGGAGAACTCCAATGAAGAGGCCCCAGAAAATAATCAAGCATATACGACTGTCTATGTTGGCAACCTTCCCCATGAGATCACTCAAGCTGAACTTCATAGTCAGTTTCATGCTCTTGGGGCTGGGGTTATTGAGGAAGTGCGTGTGCAGAGGGATAAAGGTTTTGGATTTGTGAGATACAACACTCATGAAGAAGCTGCCATGGCCATCCAAATGGGTAATGGCAGGATAATTCGTGGAAAGTCCATGAAGGTAATAAAACCTTTACTGCAAGCTCGTTTGATGCACATGATCACATATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RRM_1

Protein Analysis

343

Amino Acids

38.08

Weight (kDa)

6.31

Isoelectric Point (pI)

46.81

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RRM_1 PF00076 55 - 120 2.3e-11 RNA recognition motif
RRM_1 PF00076 140 - 210 1.3e-18 RNA recognition motif
RRM_1 PF00076 261 - 326 3.3e-14 RNA recognition motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014674)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g36570 FvH4_2g36570 FvH4_2g36570
malus_domestica MD08G1125800.v1.1 MD15G1105600.v1.1
prunus_persica Prupe.1G457400_v2.0.a1
pyrus_communis pycom08g10490
rosa_chinensis RchiOBHm_Chr6g0305251
rosa_laevigata RLG00000010905
rosa_multiflora Rmu_ssc0000276.1_g000005
rosa_roxburghii Rroxscaffold_7G00163010
rosa_rugosa Rorug06G0339000
rosa_samantha Rh6AG450600 Rh6BG450800 Rh6CG464600 Rh6DG451200
rosa_wichuraiana Rw6G039270

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 503
AccBSI CCGCTC 1 cut(s) 531
AccI GTMKAC 1 cut(s) 149
AciI CCGC 1 cut(s) 529
AclWI GGATC 1 cut(s) 522
AcoI YGGCCR 2 cut(s) 526, 933
AcuI CTGAAG 2 cut(s) 387, 702
AcyI GRCGYC 1 cut(s) 337
AfaI GTAC 2 cut(s) 68, 702
AfeI AGCGCT 1 cut(s) 39
AfiI CCNNNNNNNGG 2 cut(s) 239, 606
AflII CTTAAG 1 cut(s) 359
AflIII ACRYGT 1 cut(s) 63
AgsI TTSAA 1 cut(s) 47
AjnI CCWGG 1 cut(s) 73
AluBI AGCT 5 cut(s) 89, 202, 818, 926, 1004
AluI AGCT 5 cut(s) 89, 202, 818, 926, 1004
Alw26I GTCTC 1 cut(s) 102
AlwI GGATC 1 cut(s) 522
Aor51HI AGCGCT 1 cut(s) 39
AoxI GGCC 4 cut(s) 349, 526, 750, 933
ApeKI GCWGC 7 cut(s) 10, 31, 52, 86, 89, 308, 926
AspLEI GCGC 1 cut(s) 40
AspS9I GGNCC 2 cut(s) 230, 751
AsuC2I CCSGG 1 cut(s) 135
AsuHPI GGTGA 3 cut(s) 184, 376, 440
AvaII GGWCC 1 cut(s) 230
BaeGI GKGCMC 1 cut(s) 411
BalI TGGCCA 1 cut(s) 935
BbsI GAAGAC 1 cut(s) 402
BbvI GCAGC 7 cut(s) 22, 43, 64, 76, 98, 320, 913
BccI CCATC 4 cut(s) 78, 97, 716, 944
BceAI ACGGC 1 cut(s) 364
BciT130I CCWGG 1 cut(s) 75
BclI TGATCA 1 cut(s) 1020
BcnI CCSGG 1 cut(s) 135
BcoDI GTCTC 1 cut(s) 102
BfaI CTAG 2 cut(s) 486, 654
BfmI CTRYAG 1 cut(s) 306
BfoI RGCGCY 1 cut(s) 41
BfrI CTTAAG 1 cut(s) 359
BisI GCNGC 8 cut(s) 11, 32, 53, 87, 90, 309, 529, 927
BlsI GCNGC 8 cut(s) 12, 33, 54, 88, 91, 310, 530, 928
Bme1390I CCNGG 2 cut(s) 75, 135
Bme18I GGWCC 1 cut(s) 230
BmgT120I GGNCC 2 cut(s) 230, 751
BmiI GGNNCC 2 cut(s) 108, 753
BmrFI CCNGG 2 cut(s) 75, 135
BmrI ACTGGG 1 cut(s) 646
BmsI GCATC 5 cut(s) 233, 442, 562, 620, 1002
BmuI ACTGGG 1 cut(s) 646
BpiI GAAGAC 1 cut(s) 402
BpuEI CTTGAG 1 cut(s) 798
BpuMI CCSGG 1 cut(s) 135
BsaAI YACGTR 1 cut(s) 153
BsaHI GRCGYC 1 cut(s) 337
BsaJI CCNNGG 1 cut(s) 930
BsaWI WCCGGW 1 cut(s) 599
Bsc4I CCNNNNNNNGG 2 cut(s) 239, 606
Bse1I ACTGG 3 cut(s) 529, 641, 660
BseBI CCWGG 1 cut(s) 75
BseDI CCNNGG 1 cut(s) 930
BseGI GGATG 4 cut(s) 70, 248, 577, 936
BseLI CCNNNNNNNGG 2 cut(s) 239, 606
BseMII CTCAG 2 cut(s) 113, 590
BseNI ACTGG 3 cut(s) 529, 641, 660
BseSI GKGCMC 1 cut(s) 411
BseXI GCAGC 7 cut(s) 22, 43, 64, 76, 98, 320, 913
BseYI CCCAGC 1 cut(s) 851
BsgI GTGCAG 1 cut(s) 896
BshFI GGCC 4 cut(s) 351, 528, 752, 935
BsiSI CCGG 2 cut(s) 134, 600
BslI CCNNNNNNNGG 2 cut(s) 239, 606
BsmAI GTCTC 1 cut(s) 102
BsnI GGCC 4 cut(s) 351, 528, 752, 935
Bsp1286I GDGCHC 1 cut(s) 411
Bsp143I GATC 5 cut(s) 295, 430, 514, 807, 1020
Bsp19I CCATGG 1 cut(s) 930
BspACI CCGC 1 cut(s) 529
BspANI GGCC 4 cut(s) 351, 528, 752, 935
BspCNI CTCAG 2 cut(s) 112, 589
BspHI TCATGA 1 cut(s) 916
BspLI GGNNCC 2 cut(s) 108, 753
BspMAI CTGCAG 1 cut(s) 310
BspPI GGATC 1 cut(s) 522
BspTI CTTAAG 1 cut(s) 359
BsrBI CCGCTC 1 cut(s) 531
BsrI ACTGG 3 cut(s) 529, 641, 660
BssECI CCNNGG 1 cut(s) 930
BssMI GATC 5 cut(s) 295, 430, 514, 807, 1020
BssNI GRCGYC 1 cut(s) 337
BssT1I CCWWGG 1 cut(s) 930
Bst2UI CCWGG 1 cut(s) 75
Bst4CI ACNGT 2 cut(s) 161, 781
Bst6I CTCTTC 2 cut(s) 660, 741
BstACI GRCGYC 1 cut(s) 337
BstAFI CTTAAG 1 cut(s) 359
BstAPI GCANNNNNTGC 1 cut(s) 314
BstBAI YACGTR 1 cut(s) 153
BstC8I GCNNGC 3 cut(s) 36, 469, 1002
BstDEI CTNAG 3 cut(s) 99, 434, 576
BstDSI CCRYGG 1 cut(s) 930
BstENI CCTNNNNNAGG 1 cut(s) 237
BstF5I GGATG 4 cut(s) 70, 248, 577, 936
BstH2I RGCGCY 1 cut(s) 41
BstHHI GCGC 1 cut(s) 40
BstKTI GATC 5 cut(s) 298, 433, 517, 810, 1023
BstMAI GTCTC 1 cut(s) 102
BstMBI GATC 5 cut(s) 295, 430, 514, 807, 1020
BstMWI GCNNNNNNNGC 7 cut(s) 10, 37, 58, 314, 581, 848, 932
BstNI CCWGG 1 cut(s) 75
BstNSI RCATGY 1 cut(s) 67
BstSCI CCNGG 2 cut(s) 73, 133
BstSFI CTRYAG 1 cut(s) 306
BstSLI GKGCMC 1 cut(s) 411
BstV1I GCAGC 7 cut(s) 22, 43, 64, 76, 98, 320, 913
BstV2I GAAGAC 1 cut(s) 402
BstXI CCANNNNNNTGG 2 cut(s) 227, 943
BsuRI GGCC 4 cut(s) 351, 528, 752, 935
BtgI CCRYGG 1 cut(s) 930
BtsCI GGATG 4 cut(s) 70, 248, 577, 936
BtsIMutI CAGTG 2 cut(s) 166, 667
Cac8I GCNNGC 3 cut(s) 36, 469, 1002
CciI TCATGA 1 cut(s) 916
CfoI GCGC 1 cut(s) 40
Cfr13I GGNCC 2 cut(s) 230, 751
CseI GACGC 2 cut(s) 345, 506
Csp6I GTAC 2 cut(s) 67, 701
CviQI GTAC 2 cut(s) 67, 701
DdeI CTNAG 3 cut(s) 99, 434, 576
DpnI GATC 5 cut(s) 297, 432, 516, 809, 1022
DpnII GATC 5 cut(s) 295, 430, 514, 807, 1020
DrdI GACNNNNNNGTC 1 cut(s) 503
DseDI GACNNNNNNGTC 1 cut(s) 503
EaeI YGGCCR 2 cut(s) 526, 933
Eam1104I CTCTTC 2 cut(s) 660, 741
EarI CTCTTC 2 cut(s) 660, 741
Eco130I CCWWGG 1 cut(s) 930
Eco47I GGWCC 1 cut(s) 230
Eco47III AGCGCT 1 cut(s) 39
Eco57I CTGAAG 2 cut(s) 387, 702
EcoNI CCTNNNNNAGG 1 cut(s) 237
EcoO109I RGGNCCY 1 cut(s) 751
EcoRII CCWGG 1 cut(s) 73
EcoT14I CCWWGG 1 cut(s) 930
ErhI CCWWGG 1 cut(s) 930
FalI AAGNNNNNCTT 4 cut(s) 27, 59, 807, 839
FauNDI CATATG 1 cut(s) 274
FbaI TGATCA 1 cut(s) 1020
FblI GTMKAC 1 cut(s) 149
Fnu4HI GCNGC 8 cut(s) 11, 32, 53, 87, 90, 309, 529, 927
FokI GGATG 4 cut(s) 57, 255, 584, 923
Fsp4HI GCNGC 8 cut(s) 11, 32, 53, 87, 90, 309, 529, 927
FspBI CTAG 2 cut(s) 486, 654
GlaI GCGC 1 cut(s) 39
GluI GCNGC 8 cut(s) 11, 32, 53, 87, 90, 309, 529, 927
GsaI CCCAGC 1 cut(s) 855
HaeII RGCGCY 1 cut(s) 41
HaeIII GGCC 4 cut(s) 351, 528, 752, 935
HapII CCGG 2 cut(s) 134, 600
HgaI GACGC 2 cut(s) 345, 506
HhaI GCGC 1 cut(s) 40
Hin1I GRCGYC 1 cut(s) 337
Hin6I GCGC 1 cut(s) 38
HinP1I GCGC 1 cut(s) 38
HincII GTYRAC 1 cut(s) 286
HindII GTYRAC 1 cut(s) 286
HindIII AAGCTT 1 cut(s) 200
HinfI GANTC 1 cut(s) 713
HpaII CCGG 2 cut(s) 134, 600
HphI GGTGA 3 cut(s) 184, 376, 440
Hpy166II GTNNAC 2 cut(s) 150, 286
Hpy188I TCNGA 7 cut(s) 102, 173, 257, 300, 496, 579, 721
Hpy188III TCNNGA 4 cut(s) 220, 440, 731, 917
Hpy8I GTNNAC 2 cut(s) 150, 286
HpyAV CCTTC 2 cut(s) 806, 973
HpyCH4III ACNGT 2 cut(s) 161, 781
HpyCH4IV ACGT 1 cut(s) 152
HpyF10VI GCNNNNNNNGC 7 cut(s) 10, 37, 58, 314, 581, 848, 932
HpyF3I CTNAG 3 cut(s) 99, 434, 576
HpySE526I ACGT 1 cut(s) 152
Hsp92I GRCGYC 1 cut(s) 337
HspAI GCGC 1 cut(s) 38
Ksp22I TGATCA 1 cut(s) 1020
Kzo9I GATC 5 cut(s) 295, 430, 514, 807, 1020
LmnI GCTCC 1 cut(s) 106
Lsp1109I GCAGC 7 cut(s) 22, 43, 64, 76, 98, 320, 913
LweI GCATC 5 cut(s) 233, 442, 562, 620, 1002
MaeI CTAG 2 cut(s) 486, 654
MaeII ACGT 1 cut(s) 152
MaeIII GTNAC 2 cut(s) 190, 560
MalI GATC 5 cut(s) 297, 432, 516, 809, 1022
MbiI CCGCTC 1 cut(s) 531
MboI GATC 5 cut(s) 295, 430, 514, 807, 1020
MboII GAAGA 6 cut(s) 35, 407, 677, 708, 758, 932
MhlI GDGCHC 1 cut(s) 411
MlsI TGGCCA 1 cut(s) 935
MluCI AATT 2 cut(s) 367, 960
MluNI TGGCCA 1 cut(s) 935
MmeI TCCRAC 1 cut(s) 151
MnlI CCTC 7 cut(s) 141, 243, 384, 719, 742, 856, 873
Mox20I TGGCCA 1 cut(s) 935
MscI TGGCCA 1 cut(s) 935
MseI TTAA 2 cut(s) 186, 360
MslI CAYNNNNRTG 3 cut(s) 75, 186, 941
Msp20I TGGCCA 1 cut(s) 935
MspA1I CMGCKG 1 cut(s) 89
MspCI CTTAAG 1 cut(s) 359
MspI CCGG 2 cut(s) 134, 600
MspR9I CCNGG 2 cut(s) 75, 135
MvaI CCWGG 1 cut(s) 75
MwoI GCNNNNNNNGC 7 cut(s) 10, 37, 58, 314, 581, 848, 932
NciI CCSGG 1 cut(s) 135
NcoI CCATGG 1 cut(s) 930
NdeI CATATG 1 cut(s) 274
NdeII GATC 5 cut(s) 295, 430, 514, 807, 1020
NlaIV GGNNCC 2 cut(s) 108, 753
NmuCI GTSAC 1 cut(s) 190
NspI RCATGY 1 cut(s) 67
PagI TCATGA 1 cut(s) 916
PciI ACATGT 1 cut(s) 63
PfeI GAWTC 1 cut(s) 713
PkrI GCNGC 8 cut(s) 12, 33, 54, 88, 91, 310, 530, 928
Ppu21I YACGTR 1 cut(s) 153
PscI ACATGT 1 cut(s) 63
Psp6I CCWGG 1 cut(s) 73
PspFI CCCAGC 1 cut(s) 851
PspGI CCWGG 1 cut(s) 73
PspN4I GGNNCC 2 cut(s) 108, 753
PspPI GGNCC 2 cut(s) 230, 751
PstI CTGCAG 1 cut(s) 310
PvuII CAGCTG 1 cut(s) 89
RsaI GTAC 2 cut(s) 68, 702
RsaNI GTAC 2 cut(s) 67, 701
RseI CAYNNNNRTG 3 cut(s) 75, 186, 941
SaqAI TTAA 2 cut(s) 186, 360
SatI GCNGC 8 cut(s) 11, 32, 53, 87, 90, 309, 529, 927
Sau3AI GATC 5 cut(s) 295, 430, 514, 807, 1020
Sau96I GGNCC 2 cut(s) 230, 751
ScrFI CCNGG 2 cut(s) 75, 135
SduI GDGCHC 1 cut(s) 411
SfaNI GCATC 5 cut(s) 233, 442, 562, 620, 1002
SfcI CTRYAG 1 cut(s) 306
SinI GGWCC 1 cut(s) 230
SmiMI CAYNNNNRTG 3 cut(s) 75, 186, 941
SmlI CTYRAG 2 cut(s) 359, 813
SmoI CTYRAG 2 cut(s) 359, 813
Sse9I AATT 2 cut(s) 367, 960
SsiI CCGC 1 cut(s) 529
SspI AATATT 1 cut(s) 178
SspMI CTAG 2 cut(s) 486, 654
StyD4I CCNGG 2 cut(s) 73, 133
StyI CCWWGG 1 cut(s) 930
TaaI ACNGT 2 cut(s) 161, 781
TaiI ACGT 1 cut(s) 155
TaqII GACCGA 1 cut(s) 466
TasI AATT 2 cut(s) 367, 960
TatI WGTACW 1 cut(s) 700
TauI GCSGC 1 cut(s) 531
TfiI GAWTC 1 cut(s) 713
Tru1I TTAA 2 cut(s) 186, 360
Tru9I TTAA 2 cut(s) 186, 360
TscAI CASTG 2 cut(s) 166, 667
TseFI GTSAC 1 cut(s) 190
TseI GCWGC 7 cut(s) 10, 31, 52, 86, 89, 308, 926
Tsp45I GTSAC 1 cut(s) 190
TspDTI ATGAA 7 cut(s) 170, 726, 759, 815, 827, 933, 992
TspGWI ACGGA 1 cut(s) 548
TspRI CASTG 2 cut(s) 166, 667
Vha464I CTTAAG 1 cut(s) 359
VpaK11BI GGWCC 1 cut(s) 230
XagI CCTNNNNNAGG 1 cut(s) 237
XceI RCATGY 1 cut(s) 67
XcmI CCANNNNNNNNNTGG 1 cut(s) 947
XmiI GTMKAC 1 cut(s) 149
XspI CTAG 2 cut(s) 486, 654
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.