Prupe.1G457400_v2.0.a1

Oligouridylate-binding protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
OG0014674
Physical Location & Seq
Reverse (-)
38327106 .. 38330769
3664 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G457400.1

Sequence Viewer

Length: 1263 bp
ATGCAACAAAGATTGAAGCTTCAGCAACAGCAACAACAAGAAGCCATAATGCAGCAAGCTCTTCTTCAGCAACAACAACAACAGCACATGTACCATCCTGGTGTGCTCGCCGCTGCCATGTCTCAGATGGAGCCTATCCCAAGTGGAAATCTGCCTCCCGGATTTGACCCATCTACATGCCACAGTGTGTATGTTGGAAACATTCACGTAAATGTCACCGATAAGCTTCTTGCTGAAGTTTTCCAGAGTGTTGGTCCTCTTGCAGGATGCAAGCTCATCAGAAAGGATAAGTCATCATATGGATTTGTTGACTACCATGATCGAAATTCGGCAGCCCTTGCAATAATGACATTGCATGGACGCCAACTTTATGGTCAGGCACTTAAAGTGAATTGGGCATATGCGAATAGCCAGAGGGAGGATACTTCAGGGCACTTCAATATATTTGTTGGTGATCTTAGTCCAGAGGTTACAGATGCAACTTTATTTGCTTGCTTCTCGGTCTATCCTAGTTGTTCTGATGCAAGGGTCATGTGGGATCACAAAACTGGCCGCTCAAAAGGATATGGTTTTGTTTCTTTCCGTAACCAGCAGGATGCTCAGAGTGCTATCAATGATTTAACCGGTAAATGGCTTGGAAATAGACAAATAAGATGCAACTGGGCAACTAAGAGTGCTGGCTCCAATGAAGAGAAGCAGAATAGCGACACTCAAAATGCCGTTGTGCTTACTAATGGATCTTCAGATGGAGGTCAGGAGAACTCCAATGAAGAGGCCCCTGAAAATAATCAAGCATACACTACTGTCTATGTTGGCAACCTCTCCCATGAGGTTACTCAAGCTGAACTTCATAGTCAGTTTCATGCTCTTGGGGCTGGGGTTATTGAGGAAGTACGCGTGCAGAGGGATAAAGGTTTCGGATTTGTGAGATACAACACTCATGAAGAAGCAGCCTTGGCCATTCAAATGGCAAATGGCAGGATAATTCATGGAAAGTCCATGAAGTGTTCATGGGGTAGCAAGCCAACTCCTCCTGGGATAACTTCGAATCCACTGCCTCCTCCTGCCCAACCCTATCAGATCCTTCCGGCTGCTGGTATGAACCAAGTCTATTCTCCAGCTGACTTGTTGGCTTATCGGCGCCAACTTGCCTTAAGTCAGGCTGCGGCCACGTCCATGGCCTTGAACTCTGGTGGATCCCAACCTATGTATGAGGGATATCCTAACAGTTCATCAGGTCAGCAGCTAATGTATTATCGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RRM_1

Protein Analysis

421

Amino Acids

46.16

Weight (kDa)

6.67

Isoelectric Point (pI)

42.71

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014674)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g36570 FvH4_2g36570 FvH4_2g36570
malus_domestica MD08G1125800.v1.1 MD15G1105600.v1.1
prunus_persica Prupe.1G457400_v2.0.a1
pyrus_communis pycom08g10490
rosa_chinensis RchiOBHm_Chr6g0305251
rosa_laevigata RLG00000010905
rosa_multiflora Rmu_ssc0000276.1_g000005
rosa_roxburghii Rroxscaffold_7G00163010
rosa_rugosa Rorug06G0339000
rosa_samantha Rh6AG450600 Rh6BG450800 Rh6CG464600 Rh6DG451200
rosa_wichuraiana Rw6G039270

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 1140
AccBSI CCGCTC 1 cut(s) 555
AccII CGCG 1 cut(s) 897
AciI CCGC 3 cut(s) 111, 553, 1166
AclWI GGATC 5 cut(s) 546, 745, 1075, 1191, 1204
AcoI YGGCCR 3 cut(s) 550, 957, 1167
AcsI RAATTY 1 cut(s) 325
AcuI CTGAAG 5 cut(s) 5, 50, 255, 411, 726
AcyI GRCGYC 2 cut(s) 361, 1141
AdeI CACNNNGTG 1 cut(s) 187
AfaI GTAC 2 cut(s) 92, 894
AfiI CCNNNNNNNGG 4 cut(s) 263, 418, 630, 1094
AflII CTTAAG 1 cut(s) 1153
AflIII ACRYGT 2 cut(s) 87, 895
AgeI ACCGGT 1 cut(s) 623
AgsI TTSAA 4 cut(s) 16, 439, 965, 1186
AjiI CACGTC 1 cut(s) 1173
AjnI CCWGG 2 cut(s) 97, 1033
AluBI AGCT 7 cut(s) 19, 59, 226, 274, 842, 1121, 1246
AluI AGCT 7 cut(s) 19, 59, 226, 274, 842, 1121, 1246
Alw21I GWGCWC 1 cut(s) 108
Alw26I GTCTC 1 cut(s) 126
AlwI GGATC 5 cut(s) 546, 745, 1075, 1191, 1204
AoxI GGCC 5 cut(s) 550, 774, 957, 1167, 1179
ApeKI GCWGC 7 cut(s) 52, 113, 332, 950, 1091, 1163, 1243
ApoI RAATTY 1 cut(s) 325
AsiGI ACCGGT 1 cut(s) 623
AspLEI GCGC 1 cut(s) 1143
AspS9I GGNCC 2 cut(s) 254, 775
AsuC2I CCSGG 1 cut(s) 159
AsuHPI GGTGA 2 cut(s) 208, 464
AsuII TTCGAA 1 cut(s) 1046
AvaII GGWCC 1 cut(s) 254
BaeGI GKGCMC 1 cut(s) 435
BalI TGGCCA 1 cut(s) 959
BamHI GGATCC 1 cut(s) 1196
BanI GGYRCC 1 cut(s) 1140
Bbv12I GWGCWC 1 cut(s) 108
BbvI GCAGC 7 cut(s) 64, 100, 344, 962, 1078, 1150, 1255
BccI CCATC 4 cut(s) 102, 121, 178, 740
BceAI ACGGC 1 cut(s) 704
BcgI CGANNNNNNTGC 2 cut(s) 1036, 1070
BciT130I CCWGG 2 cut(s) 99, 1035
BciVI GTATCC 1 cut(s) 415
BcnI CCSGG 1 cut(s) 159
BcoDI GTCTC 1 cut(s) 126
BfaI CTAG 1 cut(s) 510
BfoI RGCGCY 1 cut(s) 1144
BfrI CTTAAG 1 cut(s) 1153
BfuI GTATCC 1 cut(s) 415
Bme1390I CCNGG 3 cut(s) 99, 159, 1035
Bme18I GGWCC 1 cut(s) 254
BmgBI CACGTC 1 cut(s) 1173
BmgT120I GGNCC 2 cut(s) 254, 775
BmiI GGNNCC 5 cut(s) 132, 682, 777, 1142, 1198
BmrFI CCNGG 3 cut(s) 99, 159, 1035
BmrI ACTGGG 1 cut(s) 670
BmsI GCATC 5 cut(s) 257, 466, 511, 586, 644
BmuI ACTGGG 1 cut(s) 670
BpmI CTGGAG 1 cut(s) 1101
Bpu14I TTCGAA 1 cut(s) 1046
BpuEI CTTGAG 1 cut(s) 822
BpuMI CCSGG 1 cut(s) 159
BsaAI YACGTR 1 cut(s) 208
BsaHI GRCGYC 2 cut(s) 361, 1141
BsaJI CCNNGG 3 cut(s) 954, 1034, 1176
BsaWI WCCGGW 1 cut(s) 623
Bsc4I CCNNNNNNNGG 4 cut(s) 263, 418, 630, 1094
Bse118I RCCGGY 1 cut(s) 623
Bse1I ACTGG 2 cut(s) 553, 665
Bse3DI GCAATG 1 cut(s) 350
BseBI CCWGG 2 cut(s) 99, 1035
BseDI CCNNGG 3 cut(s) 954, 1034, 1176
BseGI GGATG 3 cut(s) 94, 272, 601
BseLI CCNNNNNNNGG 4 cut(s) 263, 418, 630, 1094
BseMI GCAATG 1 cut(s) 350
BseMII CTCAG 2 cut(s) 137, 614
BseNI ACTGG 2 cut(s) 553, 665
BseRI GAGGAG 2 cut(s) 1020, 1050
BseSI GKGCMC 1 cut(s) 435
BseXI GCAGC 7 cut(s) 64, 100, 344, 962, 1078, 1150, 1255
BseYI CCCAGC 1 cut(s) 875
BsgI GTGCAG 1 cut(s) 920
Bsh1236I CGCG 1 cut(s) 897
BshFI GGCC 5 cut(s) 552, 776, 959, 1169, 1181
BshNI GGYRCC 1 cut(s) 1140
BshTI ACCGGT 1 cut(s) 623
BsiHKAI GWGCWC 1 cut(s) 108
BsiSI CCGG 3 cut(s) 159, 624, 1088
BslI CCNNNNNNNGG 4 cut(s) 263, 418, 630, 1094
BsmAI GTCTC 1 cut(s) 126
BsnI GGCC 5 cut(s) 552, 776, 959, 1169, 1181
Bsp119I TTCGAA 1 cut(s) 1046
Bsp1286I GDGCHC 2 cut(s) 108, 435
Bsp143I GATC 6 cut(s) 319, 454, 538, 737, 1080, 1196
Bsp19I CCATGG 1 cut(s) 1176
BspACI CCGC 3 cut(s) 111, 553, 1166
BspANI GGCC 5 cut(s) 552, 776, 959, 1169, 1181
BspCNI CTCAG 2 cut(s) 136, 613
BspFNI CGCG 1 cut(s) 897
BspHI TCATGA 1 cut(s) 940
BspLI GGNNCC 5 cut(s) 132, 682, 777, 1142, 1198
BspPI GGATC 5 cut(s) 546, 745, 1075, 1191, 1204
BspQI GCTCTTC 1 cut(s) 66
BspT104I TTCGAA 1 cut(s) 1046
BspT107I GGYRCC 1 cut(s) 1140
BspTI CTTAAG 1 cut(s) 1153
BsrBI CCGCTC 1 cut(s) 555
BsrDI GCAATG 1 cut(s) 350
BsrFI RCCGGY 1 cut(s) 623
BsrI ACTGG 2 cut(s) 553, 665
BssAI RCCGGY 1 cut(s) 623
BssECI CCNNGG 3 cut(s) 954, 1034, 1176
BssMI GATC 6 cut(s) 319, 454, 538, 737, 1080, 1196
BssNI GRCGYC 2 cut(s) 361, 1141
BssT1I CCWWGG 2 cut(s) 954, 1176
Bst2UI CCWGG 2 cut(s) 99, 1035
Bst4CI ACNGT 3 cut(s) 185, 805, 1229
Bst6I CTCTTC 3 cut(s) 66, 684, 765
BstACI GRCGYC 2 cut(s) 361, 1141
BstAFI CTTAAG 1 cut(s) 1153
BstAPI GCANNNNNTGC 1 cut(s) 338
BstBAI YACGTR 1 cut(s) 208
BstBI TTCGAA 1 cut(s) 1046
BstC8I GCNNGC 7 cut(s) 57, 108, 272, 493, 679, 899, 1022
BstDEI CTNAG 4 cut(s) 123, 458, 600, 669
BstDSI CCRYGG 1 cut(s) 1176
BstENI CCTNNNNNAGG 1 cut(s) 261
BstF5I GGATG 3 cut(s) 94, 272, 601
BstFNI CGCG 1 cut(s) 897
BstH2I RGCGCY 1 cut(s) 1144
BstHHI GCGC 1 cut(s) 1143
BstKTI GATC 6 cut(s) 322, 457, 541, 740, 1083, 1199
BstMAI GTCTC 1 cut(s) 126
BstMBI GATC 6 cut(s) 319, 454, 538, 737, 1080, 1196
BstMWI GCNNNNNNNGC 4 cut(s) 338, 605, 872, 956
BstNI CCWGG 2 cut(s) 99, 1035
BstNSI RCATGY 2 cut(s) 91, 180
BstSCI CCNGG 3 cut(s) 97, 157, 1033
BstSLI GKGCMC 1 cut(s) 435
BstUI CGCG 1 cut(s) 897
BstV1I GCAGC 7 cut(s) 64, 100, 344, 962, 1078, 1150, 1255
BstX2I RGATCY 3 cut(s) 737, 1080, 1196
BstXI CCANNNNNNTGG 4 cut(s) 251, 371, 967, 1177
BstYI RGATCY 3 cut(s) 737, 1080, 1196
BsuI GTATCC 1 cut(s) 415
BsuRI GGCC 5 cut(s) 552, 776, 959, 1169, 1181
BtgI CCRYGG 1 cut(s) 1176
BtrI CACGTC 1 cut(s) 1173
BtsCI GGATG 3 cut(s) 94, 272, 601
BtsI GCAGTG 1 cut(s) 1052
BtsIMutI CAGTG 2 cut(s) 190, 1052
Cac8I GCNNGC 7 cut(s) 57, 108, 272, 493, 679, 899, 1022
CciI TCATGA 1 cut(s) 940
CfoI GCGC 1 cut(s) 1143
Cfr10I RCCGGY 1 cut(s) 623
Cfr13I GGNCC 2 cut(s) 254, 775
CseI GACGC 1 cut(s) 369
Csp6I GTAC 2 cut(s) 91, 893
CspAI ACCGGT 1 cut(s) 623
CviQI GTAC 2 cut(s) 91, 893
DdeI CTNAG 4 cut(s) 123, 458, 600, 669
DinI GGCGCC 1 cut(s) 1142
DpnI GATC 6 cut(s) 321, 456, 540, 739, 1082, 1198
DpnII GATC 6 cut(s) 319, 454, 538, 737, 1080, 1196
DraIII CACNNNGTG 1 cut(s) 187
EaeI YGGCCR 3 cut(s) 550, 957, 1167
Eam1104I CTCTTC 3 cut(s) 66, 684, 765
EarI CTCTTC 3 cut(s) 66, 684, 765
Eco130I CCWWGG 2 cut(s) 954, 1176
Eco32I GATATC 1 cut(s) 1220
Eco47I GGWCC 1 cut(s) 254
Eco57I CTGAAG 5 cut(s) 5, 50, 255, 411, 726
EcoNI CCTNNNNNAGG 1 cut(s) 261
EcoO109I RGGNCCY 1 cut(s) 775
EcoRII CCWGG 2 cut(s) 97, 1033
EcoRV GATATC 1 cut(s) 1220
EcoT14I CCWWGG 2 cut(s) 954, 1176
EgeI GGCGCC 1 cut(s) 1142
EheI GGCGCC 1 cut(s) 1142
ErhI CCWWGG 2 cut(s) 954, 1176
FalI AAGNNNNNCTT 4 cut(s) 48, 80, 831, 863
FauNDI CATATG 2 cut(s) 298, 400
FokI GGATG 3 cut(s) 81, 279, 608
FspBI CTAG 1 cut(s) 510
GlaI GCGC 1 cut(s) 1142
GsaI CCCAGC 1 cut(s) 879
GsuI CTGGAG 1 cut(s) 1101
HaeII RGCGCY 1 cut(s) 1144
HaeIII GGCC 5 cut(s) 552, 776, 959, 1169, 1181
HapII CCGG 3 cut(s) 159, 624, 1088
HgaI GACGC 1 cut(s) 369
HhaI GCGC 1 cut(s) 1143
Hin1I GRCGYC 2 cut(s) 361, 1141
Hin6I GCGC 1 cut(s) 1141
HinP1I GCGC 1 cut(s) 1141
HincII GTYRAC 1 cut(s) 310
HindII GTYRAC 1 cut(s) 310
HindIII AAGCTT 2 cut(s) 17, 224
HinfI GANTC 1 cut(s) 1048
HpaII CCGG 3 cut(s) 159, 624, 1088
HphI GGTGA 2 cut(s) 208, 464
Hpy166II GTNNAC 1 cut(s) 310
Hpy188I TCNGA 7 cut(s) 126, 281, 520, 603, 745, 920, 1080
Hpy188III TCNNGA 4 cut(s) 244, 464, 755, 941
Hpy8I GTNNAC 1 cut(s) 310
HpyAV CCTTC 1 cut(s) 1094
HpyCH4III ACNGT 3 cut(s) 185, 805, 1229
HpyCH4IV ACGT 2 cut(s) 207, 1172
HpyF10VI GCNNNNNNNGC 4 cut(s) 338, 605, 872, 956
HpyF3I CTNAG 4 cut(s) 123, 458, 600, 669
HpySE526I ACGT 2 cut(s) 207, 1172
Hsp92I GRCGYC 2 cut(s) 361, 1141
HspAI GCGC 1 cut(s) 1141
KasI GGCGCC 1 cut(s) 1140
Kzo9I GATC 6 cut(s) 319, 454, 538, 737, 1080, 1196
LguI GCTCTTC 1 cut(s) 66
LmnI GCTCC 2 cut(s) 130, 686
Lsp1109I GCAGC 7 cut(s) 64, 100, 344, 962, 1078, 1150, 1255
LweI GCATC 5 cut(s) 257, 466, 511, 586, 644
MaeI CTAG 1 cut(s) 510
MaeII ACGT 2 cut(s) 207, 1172
MaeIII GTNAC 4 cut(s) 214, 469, 584, 832
MalI GATC 6 cut(s) 321, 456, 540, 739, 1082, 1198
MbiI CCGCTC 1 cut(s) 555
MboI GATC 6 cut(s) 319, 454, 538, 737, 1080, 1196
MboII GAAGA 6 cut(s) 53, 56, 701, 732, 782, 956
MflI RGATCY 3 cut(s) 737, 1080, 1196
MhlI GDGCHC 2 cut(s) 108, 435
MlsI TGGCCA 1 cut(s) 959
MluCI AATT 3 cut(s) 325, 391, 984
MluI ACGCGT 1 cut(s) 895
MluNI TGGCCA 1 cut(s) 959
Mly113I GGCGCC 1 cut(s) 1141
MmeI TCCRAC 1 cut(s) 175
Mox20I TGGCCA 1 cut(s) 959
MscI TGGCCA 1 cut(s) 959
MseI TTAA 4 cut(s) 384, 620, 1154, 1261
MslI CAYNNNNRTG 5 cut(s) 99, 175, 210, 965, 1175
Msp20I TGGCCA 1 cut(s) 959
MspA1I CMGCKG 2 cut(s) 113, 1121
MspCI CTTAAG 1 cut(s) 1153
MspI CCGG 3 cut(s) 159, 624, 1088
MspR9I CCNGG 3 cut(s) 99, 159, 1035
MvaI CCWGG 2 cut(s) 99, 1035
MvnI CGCG 1 cut(s) 897
MwoI GCNNNNNNNGC 4 cut(s) 338, 605, 872, 956
NarI GGCGCC 1 cut(s) 1141
NciI CCSGG 1 cut(s) 159
NcoI CCATGG 1 cut(s) 1176
NdeI CATATG 2 cut(s) 298, 400
NdeII GATC 6 cut(s) 319, 454, 538, 737, 1080, 1196
NlaIV GGNNCC 5 cut(s) 132, 682, 777, 1142, 1198
NmuCI GTSAC 1 cut(s) 214
NspI RCATGY 2 cut(s) 91, 180
NspV TTCGAA 1 cut(s) 1046
PagI TCATGA 1 cut(s) 940
PciI ACATGT 1 cut(s) 87
PciSI GCTCTTC 1 cut(s) 66
PfeI GAWTC 1 cut(s) 1048
PfoI TCCNGGA 1 cut(s) 157
PinAI ACCGGT 1 cut(s) 623
PluTI GGCGCC 1 cut(s) 1144
Ppu21I YACGTR 1 cut(s) 208
PscI ACATGT 1 cut(s) 87
Psp6I CCWGG 2 cut(s) 97, 1033
PspFI CCCAGC 1 cut(s) 875
PspGI CCWGG 2 cut(s) 97, 1033
PspN4I GGNNCC 5 cut(s) 132, 682, 777, 1142, 1198
PspPI GGNCC 2 cut(s) 254, 775
PsuI RGATCY 3 cut(s) 737, 1080, 1196
PvuII CAGCTG 1 cut(s) 1121
RsaI GTAC 2 cut(s) 92, 894
RsaNI GTAC 2 cut(s) 91, 893
RseI CAYNNNNRTG 5 cut(s) 99, 175, 210, 965, 1175
SapI GCTCTTC 1 cut(s) 66
SaqAI TTAA 4 cut(s) 384, 620, 1154, 1261
Sau3AI GATC 6 cut(s) 319, 454, 538, 737, 1080, 1196
Sau96I GGNCC 2 cut(s) 254, 775
ScrFI CCNGG 3 cut(s) 99, 159, 1035
SduI GDGCHC 2 cut(s) 108, 435
SfaNI GCATC 5 cut(s) 257, 466, 511, 586, 644
SfoI GGCGCC 1 cut(s) 1142
SfuI TTCGAA 1 cut(s) 1046
SinI GGWCC 1 cut(s) 254
SmiMI CAYNNNNRTG 5 cut(s) 99, 175, 210, 965, 1175
SmlI CTYRAG 2 cut(s) 837, 1153
SmoI CTYRAG 2 cut(s) 837, 1153
Sse9I AATT 3 cut(s) 325, 391, 984
SsiI CCGC 3 cut(s) 111, 553, 1166
SspDI GGCGCC 1 cut(s) 1140
SspMI CTAG 1 cut(s) 510
StyD4I CCNGG 3 cut(s) 97, 157, 1033
StyI CCWWGG 2 cut(s) 954, 1176
TaaI ACNGT 3 cut(s) 185, 805, 1229
TaiI ACGT 2 cut(s) 210, 1175
TaqI TCGA 2 cut(s) 322, 1046
TaqII GACCGA 1 cut(s) 490
TasI AATT 3 cut(s) 325, 391, 984
TauI GCSGC 3 cut(s) 113, 555, 1169
TfiI GAWTC 1 cut(s) 1048
Tru1I TTAA 4 cut(s) 384, 620, 1154, 1261
Tru9I TTAA 4 cut(s) 384, 620, 1154, 1261
TscAI CASTG 2 cut(s) 190, 1059
TseFI GTSAC 1 cut(s) 214
TseI GCWGC 7 cut(s) 52, 113, 332, 950, 1091, 1163, 1243
Tsp45I GTSAC 1 cut(s) 214
TspGWI ACGGA 1 cut(s) 572
TspRI CASTG 2 cut(s) 190, 1059
Vha464I CTTAAG 1 cut(s) 1153
VpaK11BI GGWCC 1 cut(s) 254
XagI CCTNNNNNAGG 1 cut(s) 261
XapI RAATTY 1 cut(s) 325
XceI RCATGY 2 cut(s) 91, 180
XcmI CCANNNNNNNNNTGG 1 cut(s) 124
XspI CTAG 1 cut(s) 510
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.