Rh6AG450600

Oligouridylate-binding protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6A
OG0014674
Physical Location & Seq
Forward (+)
63664006 .. 63668476
4471 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6AG450600.1

Sequence Viewer

Length: 1224 bp
ATGCAACAGCAGCAACAAGAAGCCATAATGCAGCAAGCGCTGCTTCAACAGCAGCAACAGCACATGTACCATCCTGGTGTTCTTGCAGCTGCTATGTCTCAGATGGAGCCTATCCCAAGTGGAAATCTGCCTCCGGGCTTTGACCCGTCTACGTGCCACAGTGTCTATGTCGGAAATATTCATGTTAATGTCACCGAGAAGCTTCTTGCCGAAGTTTTCCAGAGCGTTGGTCCTCTTGCAGGGTGCAAACTCATCAGAAAGGATAAGTCATCATATGGATTTGTTGACTACCTTGATCGGACTTCTGCAGCCCTTGCAATAATGAGTTTGCATGGACGCCAACTTTATGGCCTTGCACTTAAGGTGAATTGGGCGTATGCCAATAGCCAGAGGGAAGACACTTCAGGGCACTACAATATATTTGTTGGTGATCTTAGTCCAGAGATTACAGATGCAACTTTATTTGCTTGCTTCTCGGTCTATCCTAGTTGTTCTGACGCAAGGGTCATGTGGGATCACAAAACTGGCCGCTCAAAAGGATATGGCTTTGTTTCTTTCCGTAACCAGCAGGATGCTCAGAGTGCTATCAATGATTTATCCGGTAAATGGCTTGGAAACAGGCAAATAAGATGCAACTGGGCAACTAAAAGTGCTAGTTCCAGTGAAGAGAAGCAGAGTAATGACACACAAAATGCAGTTGTACTGACAAATGAATCTTCAGATGGAGGTCAGGAGAACTCCAATGAAGAGGCCCCAGAAAATAATCAAGCATATACGACTGTCTATGTTGGCAACCTTCCCCATGAGATCACTCAAGCTGAACTTCATAGTCAGTTTCATGCTCTTGGGGCTGGGGTTATTGAGGAAGTGCGTGTGCAGAGGGATAAAGGTTTTGGATTTGTGAGATACAACACTCATGAAGAAGCTGCCATGGCGATCCAAATGGGTAATGGCAGGATAATTCGTGGAAAGTCCATGAAGTGCTCATGGGGTAGCAAGCCAACTCCACCTGGGTTACCTTCGAATCCTCTACCACCCCCTGCTCAACCCTATCAGATCCTTCCAAATGCTGCTATGAACCAAGGCTATTCTCCTGCCGAGTTGTTGGCTTATCGGCGTCAACTTGCCTTAAGTCAGGCTGCCATGAGCTCTGGTGGAACTCAACCTATGTATGAGGGATATCCTAACACATCGTCAGGTCACCAGCTCATGTATTATCCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RRM_1

Protein Analysis

407

Amino Acids

44.75

Weight (kDa)

6.18

Isoelectric Point (pI)

50.43

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RRM_1 PF00076 55 - 120 3e-11 RNA recognition motif
RRM_1 PF00076 140 - 210 1.7e-18 RNA recognition motif
RRM_1 PF00076 261 - 326 4.4e-14 RNA recognition motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014674)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g36570 FvH4_2g36570 FvH4_2g36570
malus_domestica MD08G1125800.v1.1 MD15G1105600.v1.1
prunus_persica Prupe.1G457400_v2.0.a1
pyrus_communis pycom08g10490
rosa_chinensis RchiOBHm_Chr6g0305251
rosa_laevigata RLG00000010905
rosa_multiflora Rmu_ssc0000276.1_g000005
rosa_roxburghii Rroxscaffold_7G00163010
rosa_rugosa Rorug06G0339000
rosa_samantha Rh6AG450600 Rh6BG450800 Rh6CG464600 Rh6DG451200
rosa_wichuraiana Rw6G039270

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 503
AccBSI CCGCTC 1 cut(s) 531
AccI GTMKAC 1 cut(s) 149
AciI CCGC 1 cut(s) 529
AclWI GGATC 3 cut(s) 522, 931, 1051
AcoI YGGCCR 1 cut(s) 526
AcuI CTGAAG 2 cut(s) 387, 702
AcyI GRCGYC 2 cut(s) 337, 1117
AfaI GTAC 2 cut(s) 68, 702
AfeI AGCGCT 1 cut(s) 39
AfiI CCNNNNNNNGG 2 cut(s) 239, 606
AflII CTTAAG 2 cut(s) 359, 1129
AflIII ACRYGT 1 cut(s) 63
AgsI TTSAA 1 cut(s) 47
AjnI CCWGG 2 cut(s) 73, 1009
AluBI AGCT 6 cut(s) 89, 202, 818, 926, 1149, 1207
AluI AGCT 6 cut(s) 89, 202, 818, 926, 1149, 1207
Alw21I GWGCWC 2 cut(s) 986, 1151
Alw26I GTCTC 1 cut(s) 102
AlwI GGATC 3 cut(s) 522, 931, 1051
Aor51HI AGCGCT 1 cut(s) 39
AoxI GGCC 3 cut(s) 349, 526, 750
AspLEI GCGC 1 cut(s) 40
AspS9I GGNCC 2 cut(s) 230, 751
AsuC2I CCSGG 1 cut(s) 135
AsuHPI GGTGA 4 cut(s) 184, 376, 440, 1193
AsuII TTCGAA 1 cut(s) 1022
AvaII GGWCC 1 cut(s) 230
BaeGI GKGCMC 1 cut(s) 411
BanII GRGCYC 1 cut(s) 1151
BbsI GAAGAC 1 cut(s) 402
Bbv12I GWGCWC 2 cut(s) 986, 1151
BccI CCATC 3 cut(s) 78, 97, 716
BciT130I CCWGG 2 cut(s) 75, 1011
BcnI CCSGG 1 cut(s) 135
BcoDI GTCTC 1 cut(s) 102
BfaI CTAG 2 cut(s) 486, 654
BfmI CTRYAG 1 cut(s) 306
BfoI RGCGCY 1 cut(s) 41
BfrI CTTAAG 2 cut(s) 359, 1129
Bme1390I CCNGG 3 cut(s) 75, 135, 1011
Bme18I GGWCC 1 cut(s) 230
BmgT120I GGNCC 2 cut(s) 230, 751
BmiI GGNNCC 2 cut(s) 108, 753
BmrFI CCNGG 3 cut(s) 75, 135, 1011
BmrI ACTGGG 1 cut(s) 646
BmsI GCATC 3 cut(s) 442, 562, 620
BmuI ACTGGG 1 cut(s) 646
BpiI GAAGAC 1 cut(s) 402
Bpu14I TTCGAA 1 cut(s) 1022
BpuEI CTTGAG 1 cut(s) 798
BpuMI CCSGG 1 cut(s) 135
BsaAI YACGTR 1 cut(s) 153
BsaHI GRCGYC 2 cut(s) 337, 1117
BsaJI CCNNGG 3 cut(s) 930, 1010, 1081
BsaWI WCCGGW 1 cut(s) 599
Bsc4I CCNNNNNNNGG 2 cut(s) 239, 606
Bse1I ACTGG 3 cut(s) 529, 641, 660
BseBI CCWGG 2 cut(s) 75, 1011
BseDI CCNNGG 3 cut(s) 930, 1010, 1081
BseGI GGATG 2 cut(s) 70, 577
BseLI CCNNNNNNNGG 2 cut(s) 239, 606
BseMII CTCAG 2 cut(s) 113, 590
BseNI ACTGG 3 cut(s) 529, 641, 660
BseSI GKGCMC 1 cut(s) 411
BseYI CCCAGC 1 cut(s) 851
BsgI GTGCAG 1 cut(s) 896
BshFI GGCC 3 cut(s) 351, 528, 752
BsiHKAI GWGCWC 2 cut(s) 986, 1151
BsiSI CCGG 2 cut(s) 134, 600
BslI CCNNNNNNNGG 2 cut(s) 239, 606
BsmAI GTCTC 1 cut(s) 102
BsnI GGCC 3 cut(s) 351, 528, 752
Bsp119I TTCGAA 1 cut(s) 1022
Bsp1286I GDGCHC 3 cut(s) 411, 986, 1151
Bsp143I GATC 6 cut(s) 295, 430, 514, 807, 936, 1056
Bsp19I CCATGG 1 cut(s) 930
BspACI CCGC 1 cut(s) 529
BspANI GGCC 3 cut(s) 351, 528, 752
BspCNI CTCAG 2 cut(s) 112, 589
BspHI TCATGA 1 cut(s) 916
BspLI GGNNCC 2 cut(s) 108, 753
BspMAI CTGCAG 1 cut(s) 310
BspPI GGATC 3 cut(s) 522, 931, 1051
BspT104I TTCGAA 1 cut(s) 1022
BspTI CTTAAG 2 cut(s) 359, 1129
BsrBI CCGCTC 1 cut(s) 531
BsrI ACTGG 3 cut(s) 529, 641, 660
BssECI CCNNGG 3 cut(s) 930, 1010, 1081
BssMI GATC 6 cut(s) 295, 430, 514, 807, 936, 1056
BssNI GRCGYC 2 cut(s) 337, 1117
BssT1I CCWWGG 2 cut(s) 930, 1081
Bst2UI CCWGG 2 cut(s) 75, 1011
Bst4CI ACNGT 2 cut(s) 161, 781
Bst6I CTCTTC 2 cut(s) 660, 741
BstACI GRCGYC 2 cut(s) 337, 1117
BstAFI CTTAAG 2 cut(s) 359, 1129
BstAPI GCANNNNNTGC 2 cut(s) 40, 314
BstBAI YACGTR 1 cut(s) 153
BstBI TTCGAA 1 cut(s) 1022
BstC8I GCNNGC 3 cut(s) 36, 469, 998
BstDEI CTNAG 3 cut(s) 99, 434, 576
BstDSI CCRYGG 1 cut(s) 930
BstEII GGTNACC 2 cut(s) 1014, 1199
BstENI CCTNNNNNAGG 1 cut(s) 237
BstF5I GGATG 2 cut(s) 70, 577
BstH2I RGCGCY 1 cut(s) 41
BstHHI GCGC 1 cut(s) 40
BstKTI GATC 6 cut(s) 298, 433, 517, 810, 939, 1059
BstMAI GTCTC 1 cut(s) 102
BstMBI GATC 6 cut(s) 295, 430, 514, 807, 936, 1056
BstMWI GCNNNNNNNGC 9 cut(s) 10, 37, 40, 49, 58, 314, 581, 848, 932
BstNI CCWGG 2 cut(s) 75, 1011
BstNSI RCATGY 1 cut(s) 67
BstPI GGTNACC 2 cut(s) 1014, 1199
BstSCI CCNGG 3 cut(s) 73, 133, 1009
BstSFI CTRYAG 1 cut(s) 306
BstSLI GKGCMC 1 cut(s) 411
BstV2I GAAGAC 1 cut(s) 402
BstX2I RGATCY 1 cut(s) 1056
BstXI CCANNNNNNTGG 2 cut(s) 227, 347
BstYI RGATCY 1 cut(s) 1056
BsuRI GGCC 3 cut(s) 351, 528, 752
BtgI CCRYGG 1 cut(s) 930
BtsCI GGATG 2 cut(s) 70, 577
BtsIMutI CAGTG 2 cut(s) 166, 667
Cac8I GCNNGC 3 cut(s) 36, 469, 998
CciI TCATGA 1 cut(s) 916
CfoI GCGC 1 cut(s) 40
Cfr13I GGNCC 2 cut(s) 230, 751
CseI GACGC 3 cut(s) 345, 506, 1106
Csp6I GTAC 2 cut(s) 67, 701
CviQI GTAC 2 cut(s) 67, 701
DdeI CTNAG 3 cut(s) 99, 434, 576
DpnI GATC 6 cut(s) 297, 432, 516, 809, 938, 1058
DpnII GATC 6 cut(s) 295, 430, 514, 807, 936, 1056
DrdI GACNNNNNNGTC 1 cut(s) 503
DseDI GACNNNNNNGTC 1 cut(s) 503
EaeI YGGCCR 1 cut(s) 526
Eam1104I CTCTTC 2 cut(s) 660, 741
EarI CTCTTC 2 cut(s) 660, 741
Ecl136II GAGCTC 1 cut(s) 1149
Eco130I CCWWGG 2 cut(s) 930, 1081
Eco24I GRGCYC 1 cut(s) 1151
Eco32I GATATC 1 cut(s) 1181
Eco47I GGWCC 1 cut(s) 230
Eco47III AGCGCT 1 cut(s) 39
Eco53kI GAGCTC 1 cut(s) 1149
Eco57I CTGAAG 2 cut(s) 387, 702
Eco91I GGTNACC 2 cut(s) 1014, 1199
EcoICRI GAGCTC 1 cut(s) 1149
EcoNI CCTNNNNNAGG 1 cut(s) 237
EcoO109I RGGNCCY 1 cut(s) 751
EcoO65I GGTNACC 2 cut(s) 1014, 1199
EcoRII CCWGG 2 cut(s) 73, 1009
EcoRV GATATC 1 cut(s) 1181
EcoT14I CCWWGG 2 cut(s) 930, 1081
EcoT38I GRGCYC 1 cut(s) 1151
ErhI CCWWGG 2 cut(s) 930, 1081
FalI AAGNNNNNCTT 4 cut(s) 27, 59, 807, 839
FauNDI CATATG 1 cut(s) 274
FblI GTMKAC 1 cut(s) 149
FokI GGATG 2 cut(s) 57, 584
FriOI GRGCYC 1 cut(s) 1151
FspBI CTAG 2 cut(s) 486, 654
GlaI GCGC 1 cut(s) 39
GsaI CCCAGC 1 cut(s) 855
HaeII RGCGCY 1 cut(s) 41
HaeIII GGCC 3 cut(s) 351, 528, 752
HapII CCGG 2 cut(s) 134, 600
HgaI GACGC 3 cut(s) 345, 506, 1106
HhaI GCGC 1 cut(s) 40
Hin1I GRCGYC 2 cut(s) 337, 1117
Hin6I GCGC 1 cut(s) 38
HinP1I GCGC 1 cut(s) 38
HincII GTYRAC 2 cut(s) 286, 1121
HindII GTYRAC 2 cut(s) 286, 1121
HindIII AAGCTT 1 cut(s) 200
HinfI GANTC 2 cut(s) 713, 1024
HpaII CCGG 2 cut(s) 134, 600
HphI GGTGA 4 cut(s) 184, 376, 440, 1193
Hpy166II GTNNAC 3 cut(s) 150, 286, 1121
Hpy188I TCNGA 8 cut(s) 102, 173, 257, 300, 496, 579, 721, 1056
Hpy188III TCNNGA 4 cut(s) 220, 440, 731, 917
Hpy8I GTNNAC 3 cut(s) 150, 286, 1121
HpyAV CCTTC 3 cut(s) 806, 1029, 1070
HpyCH4III ACNGT 2 cut(s) 161, 781
HpyCH4IV ACGT 1 cut(s) 152
HpyF10VI GCNNNNNNNGC 9 cut(s) 10, 37, 40, 49, 58, 314, 581, 848, 932
HpyF3I CTNAG 3 cut(s) 99, 434, 576
HpySE526I ACGT 1 cut(s) 152
Hsp92I GRCGYC 2 cut(s) 337, 1117
HspAI GCGC 1 cut(s) 38
Kzo9I GATC 6 cut(s) 295, 430, 514, 807, 936, 1056
LmnI GCTCC 1 cut(s) 106
LweI GCATC 3 cut(s) 442, 562, 620
MaeI CTAG 2 cut(s) 486, 654
MaeII ACGT 1 cut(s) 152
MaeIII GTNAC 4 cut(s) 190, 560, 1014, 1199
MalI GATC 6 cut(s) 297, 432, 516, 809, 938, 1058
MbiI CCGCTC 1 cut(s) 531
MboI GATC 6 cut(s) 295, 430, 514, 807, 936, 1056
MboII GAAGA 5 cut(s) 407, 677, 708, 758, 932
MflI RGATCY 1 cut(s) 1056
MhlI GDGCHC 3 cut(s) 411, 986, 1151
MluCI AATT 2 cut(s) 367, 960
MmeI TCCRAC 1 cut(s) 151
MnlI CCTC 9 cut(s) 141, 243, 384, 719, 742, 856, 873, 1038, 1168
MseI TTAA 3 cut(s) 186, 360, 1130
MslI CAYNNNNRTG 2 cut(s) 75, 186
MspA1I CMGCKG 1 cut(s) 89
MspCI CTTAAG 2 cut(s) 359, 1129
MspI CCGG 2 cut(s) 134, 600
MspR9I CCNGG 3 cut(s) 75, 135, 1011
MvaI CCWGG 2 cut(s) 75, 1011
MwoI GCNNNNNNNGC 9 cut(s) 10, 37, 40, 49, 58, 314, 581, 848, 932
NciI CCSGG 1 cut(s) 135
NcoI CCATGG 1 cut(s) 930
NdeI CATATG 1 cut(s) 274
NdeII GATC 6 cut(s) 295, 430, 514, 807, 936, 1056
NlaIV GGNNCC 2 cut(s) 108, 753
NmeAIII GCCGAG 1 cut(s) 1123
NmuCI GTSAC 2 cut(s) 190, 1199
NspI RCATGY 1 cut(s) 67
NspV TTCGAA 1 cut(s) 1022
PagI TCATGA 1 cut(s) 916
PciI ACATGT 1 cut(s) 63
PfeI GAWTC 2 cut(s) 713, 1024
Ppu21I YACGTR 1 cut(s) 153
PscI ACATGT 1 cut(s) 63
Psp124BI GAGCTC 1 cut(s) 1151
Psp6I CCWGG 2 cut(s) 73, 1009
PspEI GGTNACC 2 cut(s) 1014, 1199
PspFI CCCAGC 1 cut(s) 851
PspGI CCWGG 2 cut(s) 73, 1009
PspN4I GGNNCC 2 cut(s) 108, 753
PspPI GGNCC 2 cut(s) 230, 751
PstI CTGCAG 1 cut(s) 310
PsuI RGATCY 1 cut(s) 1056
PvuII CAGCTG 1 cut(s) 89
RsaI GTAC 2 cut(s) 68, 702
RsaNI GTAC 2 cut(s) 67, 701
RseI CAYNNNNRTG 2 cut(s) 75, 186
SacI GAGCTC 1 cut(s) 1151
SaqAI TTAA 3 cut(s) 186, 360, 1130
Sau3AI GATC 6 cut(s) 295, 430, 514, 807, 936, 1056
Sau96I GGNCC 2 cut(s) 230, 751
ScrFI CCNGG 3 cut(s) 75, 135, 1011
SduI GDGCHC 3 cut(s) 411, 986, 1151
SfaNI GCATC 3 cut(s) 442, 562, 620
SfcI CTRYAG 1 cut(s) 306
SfuI TTCGAA 1 cut(s) 1022
SinI GGWCC 1 cut(s) 230
SmiMI CAYNNNNRTG 2 cut(s) 75, 186
SmlI CTYRAG 3 cut(s) 359, 813, 1129
SmoI CTYRAG 3 cut(s) 359, 813, 1129
Sse9I AATT 2 cut(s) 367, 960
SsiI CCGC 1 cut(s) 529
SspI AATATT 1 cut(s) 178
SspMI CTAG 2 cut(s) 486, 654
SstI GAGCTC 1 cut(s) 1151
StyD4I CCNGG 3 cut(s) 73, 133, 1009
StyI CCWWGG 2 cut(s) 930, 1081
TaaI ACNGT 2 cut(s) 161, 781
TaiI ACGT 1 cut(s) 155
TaqI TCGA 1 cut(s) 1022
TaqII GACCGA 1 cut(s) 466
TasI AATT 2 cut(s) 367, 960
TatI WGTACW 1 cut(s) 700
TauI GCSGC 1 cut(s) 531
TfiI GAWTC 2 cut(s) 713, 1024
Tru1I TTAA 3 cut(s) 186, 360, 1130
Tru9I TTAA 3 cut(s) 186, 360, 1130
TscAI CASTG 2 cut(s) 166, 667
TseFI GTSAC 2 cut(s) 190, 1199
Tsp45I GTSAC 2 cut(s) 190, 1199
TspDTI ATGAA 8 cut(s) 170, 726, 759, 815, 827, 933, 992, 1091
TspGWI ACGGA 1 cut(s) 548
TspRI CASTG 2 cut(s) 166, 667
Vha464I CTTAAG 2 cut(s) 359, 1129
VpaK11BI GGWCC 1 cut(s) 230
XagI CCTNNNNNAGG 1 cut(s) 237
XceI RCATGY 1 cut(s) 67
XcmI CCANNNNNNNNNTGG 1 cut(s) 947
XmiI GTMKAC 1 cut(s) 149
XspI CTAG 2 cut(s) 486, 654
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.