Rorug06G0339000

Oligouridylate-binding protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000006
OG0014674
Physical Location & Seq
Reverse (-)
49063605 .. 49065009
1405 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug06G0339000.1

Sequence Viewer

Length: 450 bp
ATGCTGGGAATGACTCAATCCTACTATTCATGCTTTGGCATGGAGAGAAACATGGAGTTGGTGATGAAGAAGCAGGGCCAAGCTAATGTGGACGTCTCCCCTTTCTTGCTCTTTGAGGACAGTGGGGATTCTGAAGCTGCTGCTGAGGTTGTTTTTGATGTTCCCTTGGCCGAGGATGATGCTGAGTCATGCAGCTATGACTCGGCTGATATCTCCAGTGCGGATGAGCTCATCGTAAATGGTGAAGATGATCATGGTGTTCGAGAATATCGGAGTTATGTTGATGATCATGAGGAGGAAGAGGAAGAGGAAGAGGTAATGTCTTCAGTTTATCAGAGATGGGGGCACCAGCTGAAATCAACTGTTTCTGTTGATTCAACAAAGGAGTTTGAGATGTTGAATGAGGTGGAAAAGAGCAAGCTATTTTGGGAGACTTGCTTGGCATCCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RRM_1

Protein Analysis

149

Amino Acids

16.91

Weight (kDa)

4.05

Isoelectric Point (pI)

57.9

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014674)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g36570 FvH4_2g36570 FvH4_2g36570
malus_domestica MD08G1125800.v1.1 MD15G1105600.v1.1
prunus_persica Prupe.1G457400_v2.0.a1
pyrus_communis pycom08g10490
rosa_chinensis RchiOBHm_Chr6g0305251
rosa_laevigata RLG00000010905
rosa_multiflora Rmu_ssc0000276.1_g000005
rosa_roxburghii Rroxscaffold_7G00163010
rosa_rugosa Rorug06G0339000
rosa_samantha Rh6AG450600 Rh6BG450800 Rh6CG464600 Rh6DG451200
rosa_wichuraiana Rw6G039270

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 96
AccB1I GGYRCC 1 cut(s) 345
AciI CCGC 1 cut(s) 221
AcoI YGGCCR 1 cut(s) 168
AcuI CTGAAG 2 cut(s) 153, 309
AcyI GRCGYC 1 cut(s) 93
AgsI TTSAA 2 cut(s) 378, 400
AluBI AGCT 6 cut(s) 83, 137, 195, 229, 352, 421
AluI AGCT 6 cut(s) 83, 137, 195, 229, 352, 421
Alw21I GWGCWC 1 cut(s) 231
Alw26I GTCTC 2 cut(s) 100, 425
AoxI GGCC 2 cut(s) 76, 168
ApeKI GCWGC 3 cut(s) 137, 140, 192
AspS9I GGNCC 1 cut(s) 76
AsuHPI GGTGA 2 cut(s) 73, 254
BaeGI GKGCMC 1 cut(s) 348
BanI GGYRCC 1 cut(s) 345
BanII GRGCYC 1 cut(s) 231
BbsI GAAGAC 1 cut(s) 315
Bbv12I GWGCWC 1 cut(s) 231
BbvCI CCTCAGC 1 cut(s) 144
BbvI GCAGC 3 cut(s) 124, 127, 204
BccI CCATC 1 cut(s) 333
BcgI CGANNNNNNTGC 2 cut(s) 161, 195
BclI TGATCA 2 cut(s) 250, 286
BcoDI GTCTC 2 cut(s) 100, 425
BisI GCNGC 3 cut(s) 138, 141, 193
BlsI GCNGC 3 cut(s) 139, 142, 194
BmgT120I GGNCC 1 cut(s) 76
BmiI GGNNCC 1 cut(s) 347
BmsI GCATC 1 cut(s) 169
BpiI GAAGAC 1 cut(s) 315
BpmI CTGGAG 1 cut(s) 199
Bpu10I CCTNAGC 1 cut(s) 144
BsaHI GRCGYC 1 cut(s) 93
BsaJI CCNNGG 2 cut(s) 165, 171
Bse1I ACTGG 1 cut(s) 216
BseDI CCNNGG 2 cut(s) 165, 171
BseGI GGATG 3 cut(s) 181, 229, 443
BseMII CTCAG 2 cut(s) 135, 174
BseNI ACTGG 1 cut(s) 216
BseRI GAGGAG 1 cut(s) 308
BseSI GKGCMC 1 cut(s) 348
BseXI GCAGC 3 cut(s) 124, 127, 204
BseYI CCCAGC 1 cut(s) 4
BshFI GGCC 2 cut(s) 78, 170
BshNI GGYRCC 1 cut(s) 345
BsiHKAI GWGCWC 1 cut(s) 231
BsmAI GTCTC 2 cut(s) 100, 425
BsmBI CGTCTC 1 cut(s) 100
BsnI GGCC 2 cut(s) 78, 170
Bsp1286I GDGCHC 2 cut(s) 231, 348
Bsp143I GATC 2 cut(s) 250, 286
BspACI CCGC 1 cut(s) 221
BspANI GGCC 2 cut(s) 78, 170
BspCNI CTCAG 2 cut(s) 136, 175
BspHI TCATGA 1 cut(s) 289
BspLI GGNNCC 1 cut(s) 347
BspT107I GGYRCC 1 cut(s) 345
BsrI ACTGG 1 cut(s) 216
BssECI CCNNGG 2 cut(s) 165, 171
BssMI GATC 2 cut(s) 250, 286
BssNI GRCGYC 1 cut(s) 93
BssT1I CCWWGG 1 cut(s) 165
Bst4CI ACNGT 2 cut(s) 122, 364
Bst6I CTCTTC 3 cut(s) 294, 300, 306
BstACI GRCGYC 1 cut(s) 93
BstC8I GCNNGC 1 cut(s) 419
BstDEI CTNAG 2 cut(s) 144, 183
BstF5I GGATG 3 cut(s) 181, 229, 443
BstKTI GATC 2 cut(s) 253, 289
BstMAI GTCTC 2 cut(s) 100, 425
BstMBI GATC 2 cut(s) 250, 286
BstSLI GKGCMC 1 cut(s) 348
BstV1I GCAGC 3 cut(s) 124, 127, 204
BstV2I GAAGAC 1 cut(s) 315
BsuRI GGCC 2 cut(s) 78, 170
BtsCI GGATG 3 cut(s) 181, 229, 443
BtsIMutI CAGTG 2 cut(s) 127, 223
Cac8I GCNNGC 1 cut(s) 419
CciI TCATGA 1 cut(s) 289
Cfr13I GGNCC 1 cut(s) 76
CviAII CATG 6 cut(s) 30, 40, 52, 189, 254, 290
CviJI RGCY 9 cut(s) 78, 83, 137, 170, 195, 206, 229, 352, 421
CviKI_1 RGCY 9 cut(s) 78, 83, 137, 170, 195, 206, 229, 352, 421
DdeI CTNAG 2 cut(s) 144, 183
DpnI GATC 2 cut(s) 252, 288
DpnII GATC 2 cut(s) 250, 286
EaeI YGGCCR 1 cut(s) 168
Eam1104I CTCTTC 3 cut(s) 294, 300, 306
EarI CTCTTC 3 cut(s) 294, 300, 306
Ecl136II GAGCTC 1 cut(s) 229
Eco130I CCWWGG 1 cut(s) 165
Eco24I GRGCYC 1 cut(s) 231
Eco32I GATATC 1 cut(s) 211
Eco53kI GAGCTC 1 cut(s) 229
Eco57I CTGAAG 2 cut(s) 153, 309
EcoICRI GAGCTC 1 cut(s) 229
EcoRV GATATC 1 cut(s) 211
EcoT14I CCWWGG 1 cut(s) 165
EcoT38I GRGCYC 1 cut(s) 231
ErhI CCWWGG 1 cut(s) 165
Esp3I CGTCTC 1 cut(s) 100
FaeI CATG 6 cut(s) 33, 43, 55, 192, 257, 293
FaiI YATR 8 cut(s) 31, 41, 53, 190, 198, 255, 279, 291
FatI CATG 6 cut(s) 29, 39, 51, 188, 253, 289
FbaI TGATCA 2 cut(s) 250, 286
Fnu4HI GCNGC 3 cut(s) 138, 141, 193
FokI GGATG 3 cut(s) 188, 236, 430
FriOI GRGCYC 1 cut(s) 231
Fsp4HI GCNGC 3 cut(s) 138, 141, 193
GluI GCNGC 3 cut(s) 138, 141, 193
GsaI CCCAGC 1 cut(s) 8
GsuI CTGGAG 1 cut(s) 199
HaeIII GGCC 2 cut(s) 78, 170
Hin1I GRCGYC 1 cut(s) 93
Hin1II CATG 6 cut(s) 33, 43, 55, 192, 257, 293
HinfI GANTC 5 cut(s) 13, 128, 185, 200, 374
HphI GGTGA 2 cut(s) 73, 254
Hpy166II GTNNAC 1 cut(s) 91
Hpy188I TCNGA 3 cut(s) 133, 273, 336
Hpy188III TCNNGA 3 cut(s) 263, 290, 447
Hpy8I GTNNAC 1 cut(s) 91
HpyCH4III ACNGT 2 cut(s) 122, 364
HpyCH4IV ACGT 1 cut(s) 93
HpyCH4V TGCA 1 cut(s) 192
HpyF3I CTNAG 2 cut(s) 144, 183
HpySE526I ACGT 1 cut(s) 93
Hsp92I GRCGYC 1 cut(s) 93
Hsp92II CATG 6 cut(s) 33, 43, 55, 192, 257, 293
Ksp22I TGATCA 2 cut(s) 250, 286
Kzo9I GATC 2 cut(s) 250, 286
LpnPI CCDG 3 cut(s) 59, 229, 362
Lsp1109I GCAGC 3 cut(s) 124, 127, 204
LweI GCATC 1 cut(s) 169
MaeII ACGT 1 cut(s) 93
MalI GATC 2 cut(s) 252, 288
MboI GATC 2 cut(s) 250, 286
MboII GAAGA 6 cut(s) 79, 257, 311, 315, 317, 323
MhlI GDGCHC 2 cut(s) 231, 348
MlyI GAGTC 3 cut(s) 7, 194, 194
MnlI CCTC 9 cut(s) 109, 139, 166, 286, 289, 295, 301, 307, 397
MspA1I CMGCKG 1 cut(s) 352
NdeII GATC 2 cut(s) 250, 286
NlaIII CATG 6 cut(s) 33, 43, 55, 192, 257, 293
NlaIV GGNNCC 1 cut(s) 347
NmeAIII GCCGAG 2 cut(s) 182, 196
PagI TCATGA 1 cut(s) 289
PfeI GAWTC 2 cut(s) 128, 374
PkrI GCNGC 3 cut(s) 139, 142, 194
PleI GAGTC 3 cut(s) 7, 193, 194
PpsI GAGTC 3 cut(s) 7, 193, 194
Psp124BI GAGCTC 1 cut(s) 231
PspFI CCCAGC 1 cut(s) 4
PspN4I GGNNCC 1 cut(s) 347
PspPI GGNCC 1 cut(s) 76
PvuII CAGCTG 1 cut(s) 352
SacI GAGCTC 1 cut(s) 231
SatI GCNGC 3 cut(s) 138, 141, 193
Sau3AI GATC 2 cut(s) 250, 286
Sau96I GGNCC 1 cut(s) 76
SchI GAGTC 3 cut(s) 7, 194, 194
SduI GDGCHC 2 cut(s) 231, 348
SfaNI GCATC 1 cut(s) 169
SsiI CCGC 1 cut(s) 221
SstI GAGCTC 1 cut(s) 231
StyI CCWWGG 1 cut(s) 165
TaaI ACNGT 2 cut(s) 122, 364
TaiI ACGT 1 cut(s) 96
TaqI TCGA 1 cut(s) 262
TfiI GAWTC 2 cut(s) 128, 374
TscAI CASTG 2 cut(s) 127, 223
TseI GCWGC 3 cut(s) 137, 140, 192
TspDTI ATGAA 2 cut(s) 18, 80
TspRI CASTG 2 cut(s) 127, 223
ZraI GACGTC 1 cut(s) 94
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.