RLG00000010905

Oligouridylate-binding protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr3
OG0014674
Physical Location & Seq
Reverse (-)
5209821 .. 5213625
3805 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000010905

Sequence Viewer

Length: 1197 bp
ATGCAGCAAGCTCTTCTTCAACAGCAGCAACAGCACATGTACCATCCTGGTGTTCTTGCAGCTGCTATGTCTCAGATGGAGCCTATCCCAAGTGGAAATCTGCCTCCGGGCTTTGACCCGTCTACGTGCCACAGTGTCTATGTCGGAAATATTCATGTTAATGTCACCGAGAAGCTTCTTGCCGAAGTTTTCCAGAGCGTTGGTCCTCTTGCAGGATGCAAACTCATCAGAAAGGATAAGTCGTCATATGGATTTGTTGACTACCTTGATCGGACTTCTGCAGCCCTTGCAATAATGAGTTTGCATGGACGCCAACTTTACGGCCTTGCACTTAAGGTGAATTGGGCGTATGCCAATAGCCAGAGGGAAGACACTTCAGGGCACTACAATATATTTGTTGGTGATCTTAGTCCAGAGATTACAGATGCAACTTTATTTGCTTGCTTCTCGGTCTATCCTAGTTGTTCTGACGCAAGGGTCATGTGGGATCACAAAACTGGCCGCTCAAAAGGATATGGCTTTGTTTCTTTCCGTAACCAGCAGGATGCTCAGAGTGCTATCAATGATTTATCTGGTAAATGGCTTGGAAACAGGCAAATAAGATGCAACTGGGCGACTAAAAGTGCTAGTTCCAGTGAAGAGAAGCAGGGTAATGACACACAAAATGCAGTTGTACTGACAAATGAATCTTCAGATGGAGGTCAGGAGAACTCCAATGAAGAGGCCCCAGAAAATAATCAAGCATATACGACTGTCTATGTTGGCAACCTTCCCCATGAGATCACTCAAGCTGAACTTCATAGTCAGTTTCATGCTCTTGGGGCTGGGGTTATTGAGGAAGTGCGTGTGCAGAGGGATAAAGGTTTTGGATTTGTGAGATACAACACTCATGAAGAAGCTGCCATGGCCATCCAAATGGGTAATGGCAGGATAGTTCGTGGAAAGTCCATGAAGTGTTCATGGGGTAGCAAGCCGACTCCACCTGGGTTACCTTCGAATCCTCTACCACCGCCTGCTCAACCATATCAGATCCTTCCAAATGCTGCTATGAACCAAGGCTATTCTCCAGCTGAGTTGTTGGCTTATCGGCGTCAACTTGCCTTAAGTCAGGCTGCCATGAGCTCTGGTGGAACCCAACCTATGTATGAGGGATATCCTAACACTTCGTCAGGTCACCAGCTCATGTATTATCCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RRM_1

Protein Analysis

399

Amino Acids

43.62

Weight (kDa)

6.31

Isoelectric Point (pI)

47.58

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RRM_1 PF00076 46 - 111 2.9e-11 RNA recognition motif
RRM_1 PF00076 131 - 201 1.6e-18 RNA recognition motif
RRM_1 PF00076 252 - 317 6.8e-14 RNA recognition motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014674)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g36570 FvH4_2g36570 FvH4_2g36570
malus_domestica MD08G1125800.v1.1 MD15G1105600.v1.1
prunus_persica Prupe.1G457400_v2.0.a1
pyrus_communis pycom08g10490
rosa_chinensis RchiOBHm_Chr6g0305251
rosa_laevigata RLG00000010905
rosa_multiflora Rmu_ssc0000276.1_g000005
rosa_roxburghii Rroxscaffold_7G00163010
rosa_rugosa Rorug06G0339000
rosa_samantha Rh6AG450600 Rh6BG450800 Rh6CG464600 Rh6DG451200
rosa_wichuraiana Rw6G039270

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 476
AccBSI CCGCTC 1 cut(s) 504
AccI GTMKAC 1 cut(s) 122
AciI CCGC 2 cut(s) 502, 1010
AclWI GGATC 2 cut(s) 495, 1024
AcoI YGGCCR 2 cut(s) 499, 906
AcuI CTGAAG 2 cut(s) 360, 675
AcyI GRCGYC 2 cut(s) 310, 1090
AfaI GTAC 2 cut(s) 41, 675
AfiI CCNNNNNNNGG 1 cut(s) 212
AflII CTTAAG 2 cut(s) 332, 1102
AflIII ACRYGT 1 cut(s) 36
AgsI TTSAA 1 cut(s) 20
AjnI CCWGG 2 cut(s) 46, 982
AluBI AGCT 8 cut(s) 11, 62, 175, 791, 899, 1070, 1122, 1180
AluI AGCT 8 cut(s) 11, 62, 175, 791, 899, 1070, 1122, 1180
Alw21I GWGCWC 1 cut(s) 1124
Alw26I GTCTC 1 cut(s) 75
AlwI GGATC 2 cut(s) 495, 1024
AoxI GGCC 4 cut(s) 322, 499, 723, 906
ApeKI GCWGC 8 cut(s) 4, 25, 59, 62, 281, 899, 1043, 1112
AspS9I GGNCC 2 cut(s) 203, 724
AsuC2I CCSGG 1 cut(s) 108
AsuHPI GGTGA 4 cut(s) 157, 349, 413, 1166
AsuII TTCGAA 1 cut(s) 995
AvaII GGWCC 1 cut(s) 203
BaeGI GKGCMC 1 cut(s) 384
BalI TGGCCA 1 cut(s) 908
BanII GRGCYC 1 cut(s) 1124
BbsI GAAGAC 1 cut(s) 375
Bbv12I GWGCWC 1 cut(s) 1124
BbvI GCAGC 8 cut(s) 16, 37, 49, 71, 293, 886, 1030, 1099
BccI CCATC 4 cut(s) 51, 70, 689, 917
BceAI ACGGC 1 cut(s) 337
BciT130I CCWGG 2 cut(s) 48, 984
BcnI CCSGG 1 cut(s) 108
BcoDI GTCTC 1 cut(s) 75
BfaI CTAG 2 cut(s) 459, 627
BfmI CTRYAG 1 cut(s) 279
BfrI CTTAAG 2 cut(s) 332, 1102
BisI GCNGC 9 cut(s) 5, 26, 60, 63, 282, 502, 900, 1044, 1113
BlsI GCNGC 9 cut(s) 6, 27, 61, 64, 283, 503, 901, 1045, 1114
Bme1390I CCNGG 3 cut(s) 48, 108, 984
Bme18I GGWCC 1 cut(s) 203
BmgT120I GGNCC 2 cut(s) 203, 724
BmiI GGNNCC 3 cut(s) 81, 726, 1132
BmrFI CCNGG 3 cut(s) 48, 108, 984
BmrI ACTGGG 1 cut(s) 619
BmsI GCATC 4 cut(s) 206, 415, 535, 593
BmuI ACTGGG 1 cut(s) 619
BpiI GAAGAC 1 cut(s) 375
BpmI CTGGAG 1 cut(s) 1050
Bpu14I TTCGAA 1 cut(s) 995
BpuEI CTTGAG 1 cut(s) 771
BpuMI CCSGG 1 cut(s) 108
BsaAI YACGTR 1 cut(s) 126
BsaHI GRCGYC 2 cut(s) 310, 1090
BsaJI CCNNGG 3 cut(s) 903, 983, 1054
Bsc4I CCNNNNNNNGG 1 cut(s) 212
Bse1I ACTGG 3 cut(s) 502, 614, 633
BseBI CCWGG 2 cut(s) 48, 984
BseDI CCNNGG 3 cut(s) 903, 983, 1054
BseGI GGATG 4 cut(s) 43, 221, 550, 909
BseLI CCNNNNNNNGG 1 cut(s) 212
BseMII CTCAG 3 cut(s) 86, 563, 1062
BseNI ACTGG 3 cut(s) 502, 614, 633
BseSI GKGCMC 1 cut(s) 384
BseXI GCAGC 8 cut(s) 16, 37, 49, 71, 293, 886, 1030, 1099
BseYI CCCAGC 1 cut(s) 824
BsgI GTGCAG 1 cut(s) 869
BshFI GGCC 4 cut(s) 324, 501, 725, 908
BsiHKAI GWGCWC 1 cut(s) 1124
BsiSI CCGG 1 cut(s) 107
BslI CCNNNNNNNGG 1 cut(s) 212
BsmAI GTCTC 1 cut(s) 75
BsnI GGCC 4 cut(s) 324, 501, 725, 908
Bsp119I TTCGAA 1 cut(s) 995
Bsp1286I GDGCHC 2 cut(s) 384, 1124
Bsp143I GATC 5 cut(s) 268, 403, 487, 780, 1029
Bsp19I CCATGG 1 cut(s) 903
BspACI CCGC 2 cut(s) 502, 1010
BspANI GGCC 4 cut(s) 324, 501, 725, 908
BspCNI CTCAG 3 cut(s) 85, 562, 1063
BspHI TCATGA 1 cut(s) 889
BspLI GGNNCC 3 cut(s) 81, 726, 1132
BspMAI CTGCAG 1 cut(s) 283
BspPI GGATC 2 cut(s) 495, 1024
BspQI GCTCTTC 1 cut(s) 18
BspT104I TTCGAA 1 cut(s) 995
BspTI CTTAAG 2 cut(s) 332, 1102
BsrBI CCGCTC 1 cut(s) 504
BsrI ACTGG 3 cut(s) 502, 614, 633
BssECI CCNNGG 3 cut(s) 903, 983, 1054
BssMI GATC 5 cut(s) 268, 403, 487, 780, 1029
BssNI GRCGYC 2 cut(s) 310, 1090
BssT1I CCWWGG 2 cut(s) 903, 1054
Bst2UI CCWGG 2 cut(s) 48, 984
Bst4CI ACNGT 2 cut(s) 134, 754
Bst6I CTCTTC 3 cut(s) 18, 633, 714
BstACI GRCGYC 2 cut(s) 310, 1090
BstAFI CTTAAG 2 cut(s) 332, 1102
BstAPI GCANNNNNTGC 1 cut(s) 287
BstBAI YACGTR 1 cut(s) 126
BstBI TTCGAA 1 cut(s) 995
BstC8I GCNNGC 4 cut(s) 9, 442, 971, 1014
BstDEI CTNAG 4 cut(s) 72, 407, 549, 1071
BstDSI CCRYGG 1 cut(s) 903
BstEII GGTNACC 2 cut(s) 987, 1172
BstENI CCTNNNNNAGG 1 cut(s) 210
BstF5I GGATG 4 cut(s) 43, 221, 550, 909
BstKTI GATC 5 cut(s) 271, 406, 490, 783, 1032
BstMAI GTCTC 1 cut(s) 75
BstMBI GATC 5 cut(s) 268, 403, 487, 780, 1029
BstMWI GCNNNNNNNGC 5 cut(s) 31, 287, 554, 821, 905
BstNI CCWGG 2 cut(s) 48, 984
BstNSI RCATGY 1 cut(s) 40
BstPI GGTNACC 2 cut(s) 987, 1172
BstSCI CCNGG 3 cut(s) 46, 106, 982
BstSFI CTRYAG 1 cut(s) 279
BstSLI GKGCMC 1 cut(s) 384
BstV1I GCAGC 8 cut(s) 16, 37, 49, 71, 293, 886, 1030, 1099
BstV2I GAAGAC 1 cut(s) 375
BstX2I RGATCY 1 cut(s) 1029
BstXI CCANNNNNNTGG 2 cut(s) 200, 916
BstYI RGATCY 1 cut(s) 1029
BsuRI GGCC 4 cut(s) 324, 501, 725, 908
BtgI CCRYGG 1 cut(s) 903
BtsCI GGATG 4 cut(s) 43, 221, 550, 909
BtsIMutI CAGTG 2 cut(s) 139, 640
Cac8I GCNNGC 4 cut(s) 9, 442, 971, 1014
CciI TCATGA 1 cut(s) 889
Cfr13I GGNCC 2 cut(s) 203, 724
CseI GACGC 3 cut(s) 318, 479, 1079
Csp6I GTAC 2 cut(s) 40, 674
CviQI GTAC 2 cut(s) 40, 674
DdeI CTNAG 4 cut(s) 72, 407, 549, 1071
DpnI GATC 5 cut(s) 270, 405, 489, 782, 1031
DpnII GATC 5 cut(s) 268, 403, 487, 780, 1029
DrdI GACNNNNNNGTC 1 cut(s) 476
DseDI GACNNNNNNGTC 1 cut(s) 476
EaeI YGGCCR 2 cut(s) 499, 906
Eam1104I CTCTTC 3 cut(s) 18, 633, 714
EarI CTCTTC 3 cut(s) 18, 633, 714
Ecl136II GAGCTC 1 cut(s) 1122
Eco130I CCWWGG 2 cut(s) 903, 1054
Eco24I GRGCYC 1 cut(s) 1124
Eco32I GATATC 1 cut(s) 1154
Eco47I GGWCC 1 cut(s) 203
Eco53kI GAGCTC 1 cut(s) 1122
Eco57I CTGAAG 2 cut(s) 360, 675
Eco91I GGTNACC 2 cut(s) 987, 1172
EcoICRI GAGCTC 1 cut(s) 1122
EcoNI CCTNNNNNAGG 1 cut(s) 210
EcoO109I RGGNCCY 1 cut(s) 724
EcoO65I GGTNACC 2 cut(s) 987, 1172
EcoRII CCWGG 2 cut(s) 46, 982
EcoRV GATATC 1 cut(s) 1154
EcoT14I CCWWGG 2 cut(s) 903, 1054
EcoT38I GRGCYC 1 cut(s) 1124
ErhI CCWWGG 2 cut(s) 903, 1054
FalI AAGNNNNNCTT 3 cut(s) 32, 780, 812
FauNDI CATATG 1 cut(s) 247
FblI GTMKAC 1 cut(s) 122
Fnu4HI GCNGC 9 cut(s) 5, 26, 60, 63, 282, 502, 900, 1044, 1113
FokI GGATG 4 cut(s) 30, 228, 557, 896
FriOI GRGCYC 1 cut(s) 1124
Fsp4HI GCNGC 9 cut(s) 5, 26, 60, 63, 282, 502, 900, 1044, 1113
FspBI CTAG 2 cut(s) 459, 627
GluI GCNGC 9 cut(s) 5, 26, 60, 63, 282, 502, 900, 1044, 1113
GsaI CCCAGC 1 cut(s) 828
GsuI CTGGAG 1 cut(s) 1050
HaeIII GGCC 4 cut(s) 324, 501, 725, 908
HapII CCGG 1 cut(s) 107
HgaI GACGC 3 cut(s) 318, 479, 1079
Hin1I GRCGYC 2 cut(s) 310, 1090
HincII GTYRAC 2 cut(s) 259, 1094
HindII GTYRAC 2 cut(s) 259, 1094
HindIII AAGCTT 1 cut(s) 173
HinfI GANTC 3 cut(s) 686, 976, 997
HpaII CCGG 1 cut(s) 107
HphI GGTGA 4 cut(s) 157, 349, 413, 1166
Hpy166II GTNNAC 3 cut(s) 123, 259, 1094
Hpy188I TCNGA 8 cut(s) 75, 146, 230, 273, 469, 552, 694, 1029
Hpy188III TCNNGA 4 cut(s) 193, 413, 704, 890
Hpy8I GTNNAC 3 cut(s) 123, 259, 1094
HpyAV CCTTC 3 cut(s) 779, 1002, 1043
HpyCH4III ACNGT 2 cut(s) 134, 754
HpyCH4IV ACGT 1 cut(s) 125
HpyF10VI GCNNNNNNNGC 5 cut(s) 31, 287, 554, 821, 905
HpyF3I CTNAG 4 cut(s) 72, 407, 549, 1071
HpySE526I ACGT 1 cut(s) 125
Hsp92I GRCGYC 2 cut(s) 310, 1090
Kzo9I GATC 5 cut(s) 268, 403, 487, 780, 1029
LguI GCTCTTC 1 cut(s) 18
LmnI GCTCC 1 cut(s) 79
Lsp1109I GCAGC 8 cut(s) 16, 37, 49, 71, 293, 886, 1030, 1099
LweI GCATC 4 cut(s) 206, 415, 535, 593
MaeI CTAG 2 cut(s) 459, 627
MaeII ACGT 1 cut(s) 125
MaeIII GTNAC 4 cut(s) 163, 533, 987, 1172
MalI GATC 5 cut(s) 270, 405, 489, 782, 1031
MbiI CCGCTC 1 cut(s) 504
MboI GATC 5 cut(s) 268, 403, 487, 780, 1029
MboII GAAGA 7 cut(s) 5, 8, 380, 650, 681, 731, 905
MflI RGATCY 1 cut(s) 1029
MhlI GDGCHC 2 cut(s) 384, 1124
MlsI TGGCCA 1 cut(s) 908
MluCI AATT 1 cut(s) 340
MluNI TGGCCA 1 cut(s) 908
MlyI GAGTC 1 cut(s) 970
MmeI TCCRAC 1 cut(s) 124
MnlI CCTC 9 cut(s) 114, 216, 357, 692, 715, 829, 846, 1011, 1141
Mox20I TGGCCA 1 cut(s) 908
MscI TGGCCA 1 cut(s) 908
MseI TTAA 3 cut(s) 159, 333, 1103
MslI CAYNNNNRTG 3 cut(s) 48, 159, 914
Msp20I TGGCCA 1 cut(s) 908
MspA1I CMGCKG 2 cut(s) 62, 1070
MspCI CTTAAG 2 cut(s) 332, 1102
MspI CCGG 1 cut(s) 107
MspR9I CCNGG 3 cut(s) 48, 108, 984
MvaI CCWGG 2 cut(s) 48, 984
MwoI GCNNNNNNNGC 5 cut(s) 31, 287, 554, 821, 905
NciI CCSGG 1 cut(s) 108
NcoI CCATGG 1 cut(s) 903
NdeI CATATG 1 cut(s) 247
NdeII GATC 5 cut(s) 268, 403, 487, 780, 1029
NlaIV GGNNCC 3 cut(s) 81, 726, 1132
NmuCI GTSAC 2 cut(s) 163, 1172
NspI RCATGY 1 cut(s) 40
NspV TTCGAA 1 cut(s) 995
PagI TCATGA 1 cut(s) 889
PciI ACATGT 1 cut(s) 36
PciSI GCTCTTC 1 cut(s) 18
PfeI GAWTC 2 cut(s) 686, 997
PkrI GCNGC 9 cut(s) 6, 27, 61, 64, 283, 503, 901, 1045, 1114
PleI GAGTC 1 cut(s) 970
PpsI GAGTC 1 cut(s) 970
Ppu21I YACGTR 1 cut(s) 126
PscI ACATGT 1 cut(s) 36
Psp124BI GAGCTC 1 cut(s) 1124
Psp6I CCWGG 2 cut(s) 46, 982
PspEI GGTNACC 2 cut(s) 987, 1172
PspFI CCCAGC 1 cut(s) 824
PspGI CCWGG 2 cut(s) 46, 982
PspN4I GGNNCC 3 cut(s) 81, 726, 1132
PspPI GGNCC 2 cut(s) 203, 724
PstI CTGCAG 1 cut(s) 283
PsuI RGATCY 1 cut(s) 1029
PvuII CAGCTG 2 cut(s) 62, 1070
RsaI GTAC 2 cut(s) 41, 675
RsaNI GTAC 2 cut(s) 40, 674
RseI CAYNNNNRTG 3 cut(s) 48, 159, 914
SacI GAGCTC 1 cut(s) 1124
SapI GCTCTTC 1 cut(s) 18
SaqAI TTAA 3 cut(s) 159, 333, 1103
SatI GCNGC 9 cut(s) 5, 26, 60, 63, 282, 502, 900, 1044, 1113
Sau3AI GATC 5 cut(s) 268, 403, 487, 780, 1029
Sau96I GGNCC 2 cut(s) 203, 724
SchI GAGTC 1 cut(s) 970
ScrFI CCNGG 3 cut(s) 48, 108, 984
SduI GDGCHC 2 cut(s) 384, 1124
SfaNI GCATC 4 cut(s) 206, 415, 535, 593
SfcI CTRYAG 1 cut(s) 279
SfuI TTCGAA 1 cut(s) 995
SinI GGWCC 1 cut(s) 203
SmiMI CAYNNNNRTG 3 cut(s) 48, 159, 914
SmlI CTYRAG 3 cut(s) 332, 786, 1102
SmoI CTYRAG 3 cut(s) 332, 786, 1102
Sse9I AATT 1 cut(s) 340
SsiI CCGC 2 cut(s) 502, 1010
SspI AATATT 1 cut(s) 151
SspMI CTAG 2 cut(s) 459, 627
SstI GAGCTC 1 cut(s) 1124
StyD4I CCNGG 3 cut(s) 46, 106, 982
StyI CCWWGG 2 cut(s) 903, 1054
TaaI ACNGT 2 cut(s) 134, 754
TaiI ACGT 1 cut(s) 128
TaqI TCGA 1 cut(s) 995
TaqII GACCGA 1 cut(s) 439
TasI AATT 1 cut(s) 340
TatI WGTACW 1 cut(s) 673
TauI GCSGC 1 cut(s) 504
TfiI GAWTC 2 cut(s) 686, 997
Tru1I TTAA 3 cut(s) 159, 333, 1103
Tru9I TTAA 3 cut(s) 159, 333, 1103
TscAI CASTG 2 cut(s) 139, 640
TseFI GTSAC 2 cut(s) 163, 1172
TseI GCWGC 8 cut(s) 4, 25, 59, 62, 281, 899, 1043, 1112
Tsp45I GTSAC 2 cut(s) 163, 1172
TspDTI ATGAA 9 cut(s) 143, 699, 732, 788, 800, 906, 948, 965, 1064
TspGWI ACGGA 1 cut(s) 521
TspRI CASTG 2 cut(s) 139, 640
Vha464I CTTAAG 2 cut(s) 332, 1102
VpaK11BI GGWCC 1 cut(s) 203
XagI CCTNNNNNAGG 1 cut(s) 210
XceI RCATGY 1 cut(s) 40
XcmI CCANNNNNNNNNTGG 1 cut(s) 920
XmiI GTMKAC 1 cut(s) 122
XspI CTAG 2 cut(s) 459, 627
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.