Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb2

Orthogroup ID

OG0006609

Physical Location & Seq

Genomic Coordinates Forward (+)

27442177 .. 27448507

Gene Structure 6331 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_2g37810.t4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1026 bp

ATGCATTTCTGTAAAAGATGCTTTGAAAGTTTCTCTTACGGAAACCCTAGAAACAATGCTGTTTTGCAGGATTGCAGATCAAGCACAGGCACTTTCCGCATCCGTTTGACGTACACATACCCTGTATCATCAGAAACAGTTGAGAACTCTGTTGATGGGTGCCATGGGAGTAAAAGAAGAAAAACAGGCATTGAACCTGAGAGTATGCAAGCTATTAAATCGTTGAACTGTCCGAAGTTCCGTATGGAGCAGACCAATGAACCTTGTTGTTTGGAGTTCCTCTGTTACAGGACACAAATATACTTTGGCGGGAGATACCTGAAGTACTCGAGAAATGTAAGTCAGAGCTGTTGGATTATTGATGATGAAAGAATGGGAGAAGCATCTGTTGAGGAGATAATAGGTAGCAACATTCTTCCTATATGTCGTGGTGATAAGTACAAGTTTCATGCGGCTGGCAGAGAAGATATTGATGTTCGGATGTTGGGTTCTGGGAGGCCTTTCCTGGTTGAGGTACAAAATGCGCGCTATGTCCCATCGCAGGAGTCTGTAAAAGATCTGCAAGCAAAGATAAATAACTTGCAAAATAAATTGGTTGGTGTGAAAAATTTGAAACTGGTGGGCAGTCAGTCATGGGATCTCATGCGTGAAGGAGAAGCAGAGAAACAGAAGCAATATACTGCACTTGTTTGGACTTCTCGCATTCTCAAGGATGAAGATTTTCAGTCTATATCATCAGTTAAAGACATGCATATTCTGCAAAGGACTCCAATTAGGGTGCTTCACCGCCGAAGTCCTTTGGAACGTAAAAGGATTATACATTGGATGAGAATTGAAAGAATCGTTGGAAGTTCTCAATATTTTCTTCTGCACCTATGTACCCAGGCTGGAACGTATATAAAGGAATTTGTTCATGGGGATCTTGGACGCACGCAACCCTGCTTTGGATCAATTCTTGATACTAGAGCTGAGATACTACGACTTGATGTAACGGATGTTAAAATGGATTGTTTTCTCACTGAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

342

Amino Acids

39.42

Weight (kDa)

8.89

Isoelectric Point (pI)

55.95

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pus10_N_euk	PF21237	89 - 214	2.7e-09	Eukaryotic Pus10, N-terminal
Pus10_C	PF21238	288 - 520	8.1e-84	Pus10, C-terminal

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006609)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G20410 AT1G20410
fragaria_vesca	FvH4_2g37810 FvH4_2g37810 FvH4_2g37810 FvH4_2g37810 FvH4_2g37810 FvH4_2g37810 FvH4_2g37810
malus_domestica	MD08G1005300.v1.1 MD15G1004600.v1.1 MD15G1004800.v1.1
prunus_persica	Prupe.1G357400_v2.0.a1 Prupe.1G357400_v2.0.a1 Prupe.1G357400_v2.0.a1
rosa_chinensis	RchiOBHm_Chr6g0303901
rosa_laevigata	RLG00000011036
rosa_multiflora	Rmu_co8406005.1_g000001
rosa_roxburghii	Rroxscaffold_7G00164290
rosa_rugosa	Rorug06G0325700 Rorug06G0325800
rosa_samantha	Rh6AG440000 Rh6BG463000 Rh6CG452300 Rh6DG439300
rosa_wichuraiana	Rw6G038100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	159
AccII	CGCG	1 cut(s)	526
AciI	CCGC	4 cut(s)	97, 309, 452, 787
AclWI	GGATC	3 cut(s)	645, 927, 955
AcsI	RAATTY	2 cut(s)	607, 905
AcuI	CTGAAG	1 cut(s)	341
AfaI	GTAC	5 cut(s)	113, 326, 440, 516, 880
AfiI	CCNNNNNNNGG	3 cut(s)	511, 541, 944
AgsI	TTSAA	5 cut(s)	26, 194, 226, 613, 836
AjnI	CCWGG	2 cut(s)	504, 882
AjuI	GAANNNNNNNTTGG	2 cut(s)	828, 860
AloI	GAACNNNNNNTCC	2 cut(s)	472, 504
AluBI	AGCT	3 cut(s)	212, 348, 968
AluI	AGCT	3 cut(s)	212, 348, 968
AlwI	GGATC	3 cut(s)	645, 927, 955
Ama87I	CYCGRG	1 cut(s)	328
AoxI	GGCC	1 cut(s)	497
ApoI	RAATTY	2 cut(s)	607, 905
Asp700I	GAANNNNTTC	2 cut(s)	720, 909
AspLEI	GCGC	2 cut(s)	526, 528
AsuHPI	GGTGA	2 cut(s)	443, 776
AvaI	CYCGRG	1 cut(s)	328
BaeI	ACNNNNGTAYC	2 cut(s)	862, 895
BanI	GGYRCC	1 cut(s)	159
BccI	CCATC	2 cut(s)	149, 544
BciT130I	CCWGG	2 cut(s)	506, 884
BfaI	CTAG	2 cut(s)	48, 963
BglII	AGATCT	1 cut(s)	556
BisI	GCNGC	1 cut(s)	453
BlsI	GCNGC	1 cut(s)	454
BmcAI	AGTACT	1 cut(s)	326
Bme1390I	CCNGG	2 cut(s)	506, 884
BmeT110I	CYCGRG	1 cut(s)	328
BmiI	GGNNCC	1 cut(s)	161
BmrFI	CCNGG	2 cut(s)	506, 884
BmsI	GCATC	3 cut(s)	8, 108, 392
BpuEI	CTTGAG	1 cut(s)	692
BsaJI	CCNNGG	2 cut(s)	163, 882
Bsc4I	CCNNNNNNNGG	3 cut(s)	511, 541, 944
Bse1I	ACTGG	1 cut(s)	621
BseBI	CCWGG	2 cut(s)	506, 884
BseDI	CCNNGG	2 cut(s)	163, 882
BseGI	GGATG	5 cut(s)	99, 486, 718, 831, 1000
BseLI	CCNNNNNNNGG	3 cut(s)	511, 541, 944
BseMII	CTCAG	2 cut(s)	189, 960
BseNI	ACTGG	1 cut(s)	621
BsePI	GCGCGC	1 cut(s)	524
BseRI	GAGGAG	1 cut(s)	407
BsgI	GTGCAG	2 cut(s)	666, 854
Bsh1236I	CGCG	1 cut(s)	526
BshFI	GGCC	1 cut(s)	499
BshNI	GGYRCC	1 cut(s)	159
BsiHKCI	CYCGRG	1 cut(s)	328
BslFI	GGGAC	1 cut(s)	518
BslI	CCNNNNNNNGG	3 cut(s)	511, 541, 944
BsmFI	GGGAC	1 cut(s)	518
BsmI	GAATGC	1 cut(s)	702
BsnI	GGCC	1 cut(s)	499
BsoBI	CYCGRG	1 cut(s)	328
Bsp143I	GATC	5 cut(s)	77, 556, 637, 919, 947
Bsp19I	CCATGG	1 cut(s)	163
BspACI	CCGC	4 cut(s)	97, 309, 452, 787
BspANI	GGCC	1 cut(s)	499
BspCNI	CTCAG	2 cut(s)	190, 961
BspFNI	CGCG	1 cut(s)	526
BspLI	GGNNCC	1 cut(s)	161
BspPI	GGATC	3 cut(s)	645, 927, 955
BspT107I	GGYRCC	1 cut(s)	159
BsrI	ACTGG	1 cut(s)	621
BssECI	CCNNGG	2 cut(s)	163, 882
BssHII	GCGCGC	1 cut(s)	524
BssMI	GATC	5 cut(s)	77, 556, 637, 919, 947
BssT1I	CCWWGG	1 cut(s)	163
Bst2UI	CCWGG	2 cut(s)	506, 884
Bst4CI	ACNGT	2 cut(s)	139, 230
BstAPI	GCANNNNNTGC	1 cut(s)	757
BstC8I	GCNNGC	5 cut(s)	210, 457, 526, 564, 932
BstDEI	CTNAG	2 cut(s)	198, 969
BstDSI	CCRYGG	1 cut(s)	163
BstENI	CCTNNNNNAGG	1 cut(s)	509
BstF5I	GGATG	5 cut(s)	99, 486, 718, 831, 1000
BstFNI	CGCG	1 cut(s)	526
BstHHI	GCGC	2 cut(s)	526, 528
BstKTI	GATC	5 cut(s)	80, 559, 640, 922, 950
BstMBI	GATC	5 cut(s)	77, 556, 637, 919, 947
BstMWI	GCNNNNNNNGC	3 cut(s)	81, 96, 757
BstNI	CCWGG	2 cut(s)	506, 884
BstNSI	RCATGY	1 cut(s)	751
BstSCI	CCNGG	2 cut(s)	504, 882
BstUI	CGCG	1 cut(s)	526
BstX2I	RGATCY	3 cut(s)	556, 637, 919
BstYI	RGATCY	3 cut(s)	556, 637, 919
BsuRI	GGCC	1 cut(s)	499
BtgI	CCRYGG	1 cut(s)	163
BtgZI	GCGATG	1 cut(s)	522
BtsCI	GGATG	5 cut(s)	99, 486, 718, 831, 1000
BtsIMutI	CAGTG	1 cut(s)	1017
Cac8I	GCNNGC	5 cut(s)	210, 457, 526, 564, 932
CfoI	GCGC	2 cut(s)	526, 528
CseI	GACGC	1 cut(s)	936
Csp6I	GTAC	5 cut(s)	112, 325, 439, 515, 879
CviAII	CATG	6 cut(s)	164, 449, 633, 643, 748, 914
CviJI	RGCY	6 cut(s)	212, 348, 455, 499, 887, 968
CviKI_1	RGCY	6 cut(s)	212, 348, 455, 499, 887, 968
CviQI	GTAC	5 cut(s)	112, 325, 439, 515, 879
DdeI	CTNAG	2 cut(s)	198, 969
DpnI	GATC	5 cut(s)	79, 558, 639, 921, 949
DpnII	GATC	5 cut(s)	77, 556, 637, 919, 947
Eco130I	CCWWGG	1 cut(s)	163
Eco147I	AGGCCT	1 cut(s)	499
Eco57I	CTGAAG	1 cut(s)	341
Eco88I	CYCGRG	1 cut(s)	328
EcoNI	CCTNNNNNAGG	1 cut(s)	509
EcoRII	CCWGG	2 cut(s)	504, 882
EcoT14I	CCWWGG	1 cut(s)	163
EcoT22I	ATGCAT	2 cut(s)	6, 753
ErhI	CCWWGG	1 cut(s)	163
FaeI	CATG	6 cut(s)	167, 452, 636, 646, 751, 917
FalI	AAGNNNNNCTT	2 cut(s)	19, 51
FaqI	GGGAC	1 cut(s)	518
FatI	CATG	6 cut(s)	163, 448, 632, 642, 747, 913
FauI	CCCGC	1 cut(s)	302
Fnu4HI	GCNGC	1 cut(s)	453
FokI	GGATG	5 cut(s)	86, 493, 725, 838, 1007
Fsp4HI	GCNGC	1 cut(s)	453
FspBI	CTAG	2 cut(s)	48, 963
GlaI	GCGC	2 cut(s)	525, 527
GluI	GCNGC	1 cut(s)	453
HaeIII	GGCC	1 cut(s)	499
HgaI	GACGC	1 cut(s)	936
HhaI	GCGC	2 cut(s)	526, 528
Hin1II	CATG	6 cut(s)	167, 452, 636, 646, 751, 917
Hin6I	GCGC	2 cut(s)	524, 526
HinP1I	GCGC	2 cut(s)	524, 526
HinfI	GANTC	3 cut(s)	545, 766, 840
HphI	GGTGA	2 cut(s)	443, 776
Hpy166II	GTNNAC	1 cut(s)	114
Hpy188I	TCNGA	4 cut(s)	133, 234, 345, 480
Hpy188III	TCNNGA	2 cut(s)	330, 956
Hpy8I	GTNNAC	1 cut(s)	114
HpyAV	CCTTC	1 cut(s)	644
HpyCH4III	ACNGT	2 cut(s)	139, 230
HpyCH4IV	ACGT	3 cut(s)	110, 805, 893
HpyF10VI	GCNNNNNNNGC	3 cut(s)	81, 96, 757
HpyF3I	CTNAG	2 cut(s)	198, 969
HpySE526I	ACGT	3 cut(s)	110, 805, 893
Hsp92II	CATG	6 cut(s)	167, 452, 636, 646, 751, 917
HspAI	GCGC	2 cut(s)	524, 526
Kzo9I	GATC	5 cut(s)	77, 556, 637, 919, 947
LmnI	GCTCC	1 cut(s)	247
LweI	GCATC	3 cut(s)	8, 108, 392
MaeI	CTAG	2 cut(s)	48, 963
MaeII	ACGT	3 cut(s)	110, 805, 893
MaeIII	GTNAC	2 cut(s)	284, 988
MalI	GATC	5 cut(s)	79, 558, 639, 921, 949
MboI	GATC	5 cut(s)	77, 556, 637, 919, 947
MboII	GAAGA	5 cut(s)	189, 407, 476, 728, 857
MflI	RGATCY	3 cut(s)	556, 637, 919
MluCI	AATT	6 cut(s)	590, 607, 771, 831, 905, 951
MlyI	GAGTC	2 cut(s)	554, 760
MmeI	TCCRAC	2 cut(s)	332, 826
MnlI	CCTC	4 cut(s)	290, 385, 489, 505
Mph1103I	ATGCAT	2 cut(s)	6, 753
MroXI	GAANNNNTTC	2 cut(s)	720, 909
MseI	TTAA	3 cut(s)	216, 741, 999
MspR9I	CCNGG	2 cut(s)	506, 884
Mva1269I	GAATGC	1 cut(s)	702
MvaI	CCWGG	2 cut(s)	506, 884
MvnI	CGCG	1 cut(s)	526
MwoI	GCNNNNNNNGC	3 cut(s)	81, 96, 757
NcoI	CCATGG	1 cut(s)	163
NdeII	GATC	5 cut(s)	77, 556, 637, 919, 947
NlaIII	CATG	6 cut(s)	167, 452, 636, 646, 751, 917
NlaIV	GGNNCC	1 cut(s)	161
NsiI	ATGCAT	2 cut(s)	6, 753
NspI	RCATGY	1 cut(s)	751
PaeR7I	CTCGAG	1 cut(s)	328
PauI	GCGCGC	1 cut(s)	524
PceI	AGGCCT	1 cut(s)	499
PctI	GAATGC	1 cut(s)	702
PdmI	GAANNNNTTC	2 cut(s)	720, 909
PfeI	GAWTC	1 cut(s)	840
PkrI	GCNGC	1 cut(s)	454
PleI	GAGTC	2 cut(s)	553, 760
PpsI	GAGTC	2 cut(s)	553, 760
Psp6I	CCWGG	2 cut(s)	504, 882
PspGI	CCWGG	2 cut(s)	504, 882
PspN4I	GGNNCC	1 cut(s)	161
PsuI	RGATCY	3 cut(s)	556, 637, 919
PteI	GCGCGC	1 cut(s)	524
RsaI	GTAC	5 cut(s)	113, 326, 440, 516, 880
RsaNI	GTAC	5 cut(s)	112, 325, 439, 515, 879
SaqAI	TTAA	3 cut(s)	216, 741, 999
SatI	GCNGC	1 cut(s)	453
Sau3AI	GATC	5 cut(s)	77, 556, 637, 919, 947
ScaI	AGTACT	1 cut(s)	326
SchI	GAGTC	2 cut(s)	554, 760
ScrFI	CCNGG	2 cut(s)	506, 884
SfaNI	GCATC	3 cut(s)	8, 108, 392
Sfr274I	CTCGAG	1 cut(s)	328
SlaI	CTCGAG	1 cut(s)	328
SmlI	CTYRAG	2 cut(s)	328, 707
SmoI	CTYRAG	2 cut(s)	328, 707
Sse9I	AATT	6 cut(s)	590, 607, 771, 831, 905, 951
SseBI	AGGCCT	1 cut(s)	499
SsiI	CCGC	4 cut(s)	97, 309, 452, 787
SspI	AATATT	1 cut(s)	860
SspMI	CTAG	2 cut(s)	48, 963
StuI	AGGCCT	1 cut(s)	499
StyD4I	CCNGG	2 cut(s)	504, 882
StyI	CCWWGG	1 cut(s)	163
TaaI	ACNGT	2 cut(s)	139, 230
TaiI	ACGT	3 cut(s)	113, 808, 896
TaqI	TCGA	1 cut(s)	329
TasI	AATT	6 cut(s)	590, 607, 771, 831, 905, 951
TatI	WGTACW	2 cut(s)	324, 438
TauI	GCSGC	1 cut(s)	455
TfiI	GAWTC	1 cut(s)	840
Tru1I	TTAA	3 cut(s)	216, 741, 999
Tru9I	TTAA	3 cut(s)	216, 741, 999
TscAI	CASTG	1 cut(s)	1024
TspDTI	ATGAA	5 cut(s)	273, 381, 437, 729, 902
TspGWI	ACGGA	4 cut(s)	54, 92, 230, 1007
TspRI	CASTG	1 cut(s)	1024
XagI	CCTNNNNNAGG	1 cut(s)	509
XapI	RAATTY	2 cut(s)	607, 905
XceI	RCATGY	1 cut(s)	751
XhoI	CTCGAG	1 cut(s)	328
XmnI	GAANNNNTTC	2 cut(s)	720, 909
XspI	CTAG	2 cut(s)	48, 963
ZrmI	AGTACT	1 cut(s)	326
Zsp2I	ATGCAT	2 cut(s)	6, 753

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.