Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr15

Orthogroup ID

OG0006609

Physical Location & Seq

Genomic Coordinates Forward (+)

275797 .. 277604

Gene Structure 1808 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD15G1004600.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 261 bp

ATGGTCCACCGGGGTATGCACCAGATGCATCTTACGGTTCTTTGGGATCAGAGAGAATGTTTACTATCGTTCTCACTATCGCGGTCAATCTTGAGTTCACTTCTTGGAGATTCTGAGAAACATTTGGTGGATAGTAAAGCAAGAGAACCGGTAGCTTGTAGCGTTTGCTTGGGGATCTTGCAGTCAGTTATTCTGTTGATAAGAAGTTGGTGGCAGAAAGGGAGAGTGCCGACGAGTTGGCTGTTTCCATTTCCAATCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

87

Amino Acids

9.87

Weight (kDa)

9.1

Isoelectric Point (pI)

87.85

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006609)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G20410 AT1G20410
fragaria_vesca	FvH4_2g37810 FvH4_2g37810 FvH4_2g37810 FvH4_2g37810 FvH4_2g37810 FvH4_2g37810 FvH4_2g37810
malus_domestica	MD08G1005300.v1.1 MD15G1004600.v1.1 MD15G1004800.v1.1
prunus_persica	Prupe.1G357400_v2.0.a1 Prupe.1G357400_v2.0.a1 Prupe.1G357400_v2.0.a1
rosa_chinensis	RchiOBHm_Chr6g0303901
rosa_laevigata	RLG00000011036
rosa_multiflora	Rmu_co8406005.1_g000001
rosa_roxburghii	Rroxscaffold_7G00164290
rosa_rugosa	Rorug06G0325700 Rorug06G0325800
rosa_samantha	Rh6AG440000 Rh6BG463000 Rh6CG452300 Rh6DG439300
rosa_wichuraiana	Rw6G038100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	82
AciI	CCGC	1 cut(s)	82
AclWI	GGATC	2 cut(s)	54, 182
AgeI	ACCGGT	1 cut(s)	148
AluBI	AGCT	1 cut(s)	155
AluI	AGCT	1 cut(s)	155
AlwI	GGATC	2 cut(s)	54, 182
AsiGI	ACCGGT	1 cut(s)	148
AspS9I	GGNCC	1 cut(s)	4
AsuC2I	CCSGG	1 cut(s)	11
AvaII	GGWCC	1 cut(s)	4
BcnI	CCSGG	1 cut(s)	11
Bme1390I	CCNGG	1 cut(s)	11
Bme18I	GGWCC	1 cut(s)	4
BmgT120I	GGNCC	1 cut(s)	4
BmrFI	CCNGG	1 cut(s)	11
BmsI	GCATC	2 cut(s)	15, 37
BpuEI	CTTGAG	1 cut(s)	112
BpuMI	CCSGG	1 cut(s)	11
BsaJI	CCNNGG	1 cut(s)	10
BsaWI	WCCGGW	1 cut(s)	148
Bse118I	RCCGGY	1 cut(s)	148
BseDI	CCNNGG	1 cut(s)	10
BseMII	CTCAG	1 cut(s)	105
Bsh1236I	CGCG	1 cut(s)	82
BshTI	ACCGGT	1 cut(s)	148
BsiSI	CCGG	2 cut(s)	10, 149
Bsp143I	GATC	2 cut(s)	46, 174
BspACI	CCGC	1 cut(s)	82
BspCNI	CTCAG	1 cut(s)	106
BspFNI	CGCG	1 cut(s)	82
BspPI	GGATC	2 cut(s)	54, 182
BsrFI	RCCGGY	1 cut(s)	148
BssAI	RCCGGY	1 cut(s)	148
BssECI	CCNNGG	1 cut(s)	10
BssMI	GATC	2 cut(s)	46, 174
Bst4CI	ACNGT	1 cut(s)	37
BstAPI	GCANNNNNTGC	1 cut(s)	25
BstDEI	CTNAG	1 cut(s)	114
BstFNI	CGCG	1 cut(s)	82
BstKTI	GATC	2 cut(s)	49, 177
BstMBI	GATC	2 cut(s)	46, 174
BstMWI	GCNNNNNNNGC	1 cut(s)	25
BstSCI	CCNGG	1 cut(s)	9
BstUI	CGCG	1 cut(s)	82
BstX2I	RGATCY	1 cut(s)	174
BstYI	RGATCY	1 cut(s)	174
Cfr10I	RCCGGY	1 cut(s)	148
Cfr13I	GGNCC	1 cut(s)	4
CspAI	ACCGGT	1 cut(s)	148
CviJI	RGCY	2 cut(s)	155, 241
CviKI_1	RGCY	2 cut(s)	155, 241
DdeI	CTNAG	1 cut(s)	114
DpnI	GATC	2 cut(s)	48, 176
DpnII	GATC	2 cut(s)	46, 174
Eco47I	GGWCC	1 cut(s)	4
EcoT22I	ATGCAT	1 cut(s)	30
FaiI	YATR	1 cut(s)	17
HapII	CCGG	2 cut(s)	10, 149
HinfI	GANTC	1 cut(s)	110
HpaII	CCGG	2 cut(s)	10, 149
Hpy166II	GTNNAC	3 cut(s)	7, 62, 98
Hpy188I	TCNGA	3 cut(s)	51, 115, 260
Hpy188III	TCNNGA	1 cut(s)	91
Hpy8I	GTNNAC	3 cut(s)	7, 62, 98
Hpy99I	CGWCG	1 cut(s)	235
HpyCH4III	ACNGT	1 cut(s)	37
HpyCH4V	TGCA	3 cut(s)	19, 28, 181
HpyF10VI	GCNNNNNNNGC	1 cut(s)	25
HpyF3I	CTNAG	1 cut(s)	114
Kzo9I	GATC	2 cut(s)	46, 174
LpnPI	CCDG	3 cut(s)	23, 35, 162
LweI	GCATC	2 cut(s)	15, 37
MalI	GATC	2 cut(s)	48, 176
MboI	GATC	2 cut(s)	46, 174
MflI	RGATCY	1 cut(s)	174
Mph1103I	ATGCAT	1 cut(s)	30
MspI	CCGG	2 cut(s)	10, 149
MspR9I	CCNGG	1 cut(s)	11
MvnI	CGCG	1 cut(s)	82
MwoI	GCNNNNNNNGC	1 cut(s)	25
NciI	CCSGG	1 cut(s)	11
NdeII	GATC	2 cut(s)	46, 174
NsiI	ATGCAT	1 cut(s)	30
PfeI	GAWTC	1 cut(s)	110
PinAI	ACCGGT	1 cut(s)	148
PspPI	GGNCC	1 cut(s)	4
PsuI	RGATCY	1 cut(s)	174
Sau3AI	GATC	2 cut(s)	46, 174
Sau96I	GGNCC	1 cut(s)	4
ScrFI	CCNGG	1 cut(s)	11
SetI	ASST	1 cut(s)	157
SfaNI	GCATC	2 cut(s)	15, 37
SinI	GGWCC	1 cut(s)	4
SmlI	CTYRAG	1 cut(s)	91
SmoI	CTYRAG	1 cut(s)	91
SsiI	CCGC	1 cut(s)	82
StyD4I	CCNGG	1 cut(s)	9
TaaI	ACNGT	1 cut(s)	37
TfiI	GAWTC	1 cut(s)	110
VpaK11BI	GGWCC	1 cut(s)	4
Zsp2I	ATGCAT	1 cut(s)	30

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.