tRNA pseudouridine synthase
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT1G20410 AT1G20410 |
| fragaria_vesca | FvH4_2g37810 FvH4_2g37810 FvH4_2g37810 FvH4_2g37810 FvH4_2g37810 FvH4_2g37810 FvH4_2g37810 |
| malus_domestica | MD08G1005300.v1.1 MD15G1004600.v1.1 MD15G1004800.v1.1 |
| prunus_persica | Prupe.1G357400_v2.0.a1 Prupe.1G357400_v2.0.a1 Prupe.1G357400_v2.0.a1 |
| rosa_chinensis | RchiOBHm_Chr6g0303901 |
| rosa_laevigata | RLG00000011036 |
| rosa_multiflora | Rmu_co8406005.1_g000001 |
| rosa_roxburghii | Rroxscaffold_7G00164290 |
| rosa_rugosa | Rorug06G0325700 Rorug06G0325800 |
| rosa_samantha | Rh6AG440000 Rh6BG463000 Rh6CG452300 Rh6DG439300 |
| rosa_wichuraiana | Rw6G038100 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AatII | GACGTC | 1 cut(s) | 78 |
| AccB1I | GGYRCC | 1 cut(s) | 675 |
| AccIII | TCCGGA | 1 cut(s) | 1064 |
| AciI | CCGC | 6 cut(s) | 148, 347, 613, 1028, 1360, 1363 |
| AclWI | GGATC | 4 cut(s) | 474, 1218, 1500, 1528 |
| AcsI | RAATTY | 4 cut(s) | 552, 661, 1016, 1478 |
| AcuI | CTGAAG | 1 cut(s) | 827 |
| AcyI | GRCGYC | 1 cut(s) | 75 |
| AdeI | CACNNNGTG | 1 cut(s) | 103 |
| AfaI | GTAC | 5 cut(s) | 629, 1013, 1089, 1453, 1534 |
| AfiI | CCNNNNNNNGG | 4 cut(s) | 382, 1084, 1114, 1517 |
| AflIII | ACRYGT | 1 cut(s) | 1320 |
| AgsI | TTSAA | 7 cut(s) | 228, 419, 506, 550, 759, 791, 1311 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 1297 |
| AjnI | CCWGG | 3 cut(s) | 441, 1077, 1455 |
| AleI | CACNNNNGTG | 1 cut(s) | 1261 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 1045, 1077 |
| AluBI | AGCT | 7 cut(s) | 86, 210, 583, 770, 785, 921, 1515 |
| AluI | AGCT | 7 cut(s) | 86, 210, 583, 770, 785, 921, 1515 |
| Alw21I | GWGCWC | 2 cut(s) | 88, 212 |
| Alw26I | GTCTC | 1 cut(s) | 189 |
| AlwI | GGATC | 4 cut(s) | 474, 1218, 1500, 1528 |
| Ama87I | CYCGRG | 1 cut(s) | 901 |
| Aor13HI | TCCGGA | 1 cut(s) | 1064 |
| AoxI | GGCC | 1 cut(s) | 1070 |
| ApeKI | GCWGC | 2 cut(s) | 684, 1025 |
| ApoI | RAATTY | 4 cut(s) | 552, 661, 1016, 1478 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 1482 |
| AsuHPI | GGTGA | 4 cut(s) | 186, 343, 1016, 1349 |
| AvaI | CYCGRG | 1 cut(s) | 901 |
| BaeGI | GKGCMC | 1 cut(s) | 67 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 1435, 1468 |
| BanI | GGYRCC | 1 cut(s) | 675 |
| BanII | GRGCYC | 2 cut(s) | 88, 212 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 411, 443 |
| BbsI | GAAGAC | 1 cut(s) | 1296 |
| Bbv12I | GWGCWC | 2 cut(s) | 88, 212 |
| BbvI | GCAGC | 2 cut(s) | 696, 1012 |
| BccI | CCATC | 2 cut(s) | 344, 1117 |
| BceAI | ACGGC | 2 cut(s) | 86, 697 |
| BciT130I | CCWGG | 3 cut(s) | 443, 1079, 1457 |
| BcoDI | GTCTC | 1 cut(s) | 189 |
| BfaI | CTAG | 3 cut(s) | 572, 1512, 1536 |
| BglII | AGATCT | 1 cut(s) | 1129 |
| BisI | GCNGC | 3 cut(s) | 685, 1026, 1363 |
| BlpI | GCTNAGC | 1 cut(s) | 206 |
| BlsI | GCNGC | 3 cut(s) | 686, 1027, 1364 |
| Bme1390I | CCNGG | 3 cut(s) | 443, 1079, 1457 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 1297 |
| BmeT110I | CYCGRG | 1 cut(s) | 901 |
| BmiI | GGNNCC | 2 cut(s) | 677, 1063 |
| BmrFI | CCNGG | 3 cut(s) | 443, 1079, 1457 |
| BmsI | GCATC | 3 cut(s) | 128, 532, 965 |
| BpiI | GAAGAC | 1 cut(s) | 1296 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 101, 133 |
| BpmI | CTGGAG | 1 cut(s) | 839 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 206 |
| BpuEI | CTTGAG | 1 cut(s) | 1265 |
| BsaHI | GRCGYC | 1 cut(s) | 75 |
| BsaI | GGTCTC | 1 cut(s) | 189 |
| BsaJI | CCNNGG | 2 cut(s) | 679, 1455 |
| BsaWI | WCCGGW | 2 cut(s) | 861, 1064 |
| Bsc4I | CCNNNNNNNGG | 4 cut(s) | 382, 1084, 1114, 1517 |
| Bse1I | ACTGG | 3 cut(s) | 263, 434, 1194 |
| BseAI | TCCGGA | 1 cut(s) | 1064 |
| BseBI | CCWGG | 3 cut(s) | 443, 1079, 1457 |
| BseDI | CCNNGG | 2 cut(s) | 679, 1455 |
| BseGI | GGATG | 5 cut(s) | 355, 1059, 1291, 1404, 1573 |
| BseLI | CCNNNNNNNGG | 4 cut(s) | 382, 1084, 1114, 1517 |
| BseMII | CTCAG | 2 cut(s) | 197, 225 |
| BseNI | ACTGG | 3 cut(s) | 263, 434, 1194 |
| BseRI | GAGGAG | 1 cut(s) | 177 |
| BseSI | GKGCMC | 1 cut(s) | 67 |
| BseXI | GCAGC | 2 cut(s) | 696, 1012 |
| BseYI | CCCAGC | 2 cut(s) | 92, 770 |
| BsgI | GTGCAG | 2 cut(s) | 1239, 1427 |
| Bsh1285I | CGRYCG | 1 cut(s) | 36 |
| BshFI | GGCC | 1 cut(s) | 1072 |
| BshNI | GGYRCC | 1 cut(s) | 675 |
| BsiEI | CGRYCG | 1 cut(s) | 36 |
| BsiHKAI | GWGCWC | 2 cut(s) | 88, 212 |
| BsiHKCI | CYCGRG | 1 cut(s) | 901 |
| BsiSI | CCGG | 3 cut(s) | 29, 862, 1065 |
| BslFI | GGGAC | 1 cut(s) | 1091 |
| BslI | CCNNNNNNNGG | 4 cut(s) | 382, 1084, 1114, 1517 |
| BsmAI | GTCTC | 1 cut(s) | 189 |
| BsmFI | GGGAC | 1 cut(s) | 1091 |
| BsmI | GAATGC | 3 cut(s) | 530, 615, 1275 |
| BsnI | GGCC | 1 cut(s) | 1072 |
| Bso31I | GGTCTC | 1 cut(s) | 189 |
| BsoBI | CYCGRG | 1 cut(s) | 901 |
| Bsp1286I | GDGCHC | 3 cut(s) | 67, 88, 212 |
| Bsp13I | TCCGGA | 1 cut(s) | 1064 |
| Bsp143I | GATC | 5 cut(s) | 466, 1129, 1210, 1492, 1520 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 206 |
| BspACI | CCGC | 6 cut(s) | 148, 347, 613, 1028, 1360, 1363 |
| BspANI | GGCC | 1 cut(s) | 1072 |
| BspCNI | CTCAG | 2 cut(s) | 198, 224 |
| BspEI | TCCGGA | 1 cut(s) | 1064 |
| BspLI | GGNNCC | 2 cut(s) | 677, 1063 |
| BspPI | GGATC | 4 cut(s) | 474, 1218, 1500, 1528 |
| BspT107I | GGYRCC | 1 cut(s) | 675 |
| BspTNI | GGTCTC | 1 cut(s) | 189 |
| BsrI | ACTGG | 3 cut(s) | 263, 434, 1194 |
| BssECI | CCNNGG | 2 cut(s) | 679, 1455 |
| BssMI | GATC | 5 cut(s) | 466, 1129, 1210, 1492, 1520 |
| BssNI | GRCGYC | 1 cut(s) | 75 |
| Bst2UI | CCWGG | 3 cut(s) | 443, 1079, 1457 |
| Bst4CI | ACNGT | 5 cut(s) | 37, 198, 248, 407, 655 |
| BstACI | GRCGYC | 1 cut(s) | 75 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 138 |
| BstC8I | GCNNGC | 4 cut(s) | 173, 783, 1030, 1099 |
| BstDEI | CTNAG | 2 cut(s) | 206, 211 |
| BstDSI | CCRYGG | 1 cut(s) | 679 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 1082 |
| BstF5I | GGATG | 5 cut(s) | 355, 1059, 1291, 1404, 1573 |
| BstKTI | GATC | 5 cut(s) | 469, 1132, 1213, 1495, 1523 |
| BstMAI | GTCTC | 1 cut(s) | 189 |
| BstMBI | GATC | 5 cut(s) | 466, 1129, 1210, 1492, 1520 |
| BstMCI | CGRYCG | 1 cut(s) | 36 |
| BstMWI | GCNNNNNNNGC | 5 cut(s) | 29, 138, 597, 612, 684 |
| BstNI | CCWGG | 3 cut(s) | 443, 1079, 1457 |
| BstNSI | RCATGY | 1 cut(s) | 1324 |
| BstSCI | CCNGG | 3 cut(s) | 441, 1077, 1455 |
| BstSLI | GKGCMC | 1 cut(s) | 67 |
| BstV1I | GCAGC | 2 cut(s) | 696, 1012 |
| BstV2I | GAAGAC | 1 cut(s) | 1296 |
| BstX2I | RGATCY | 3 cut(s) | 1129, 1210, 1492 |
| BstYI | RGATCY | 3 cut(s) | 1129, 1210, 1492 |
| BsuRI | GGCC | 1 cut(s) | 1072 |
| BtgI | CCRYGG | 1 cut(s) | 679 |
| BtgZI | GCGATG | 1 cut(s) | 1095 |
| BtsCI | GGATG | 5 cut(s) | 355, 1059, 1291, 1404, 1573 |
| BtsI | GCAGTG | 2 cut(s) | 515, 1251 |
| BtsIMutI | CAGTG | 4 cut(s) | 270, 515, 1251, 1590 |
| Cac8I | GCNNGC | 4 cut(s) | 173, 783, 1030, 1099 |
| CseI | GACGC | 1 cut(s) | 1509 |
| Csp6I | GTAC | 5 cut(s) | 628, 1012, 1088, 1452, 1533 |
| CviAII | CATG | 5 cut(s) | 1022, 1206, 1216, 1321, 1487 |
| CviQI | GTAC | 5 cut(s) | 628, 1012, 1088, 1452, 1533 |
| DdeI | CTNAG | 2 cut(s) | 206, 211 |
| DpnI | GATC | 5 cut(s) | 468, 1131, 1212, 1494, 1522 |
| DpnII | GATC | 5 cut(s) | 466, 1129, 1210, 1492, 1520 |
| DraIII | CACNNNGTG | 1 cut(s) | 103 |
| DriI | GACNNNNNGTC | 1 cut(s) | 1297 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 1297 |
| Ecl136II | GAGCTC | 2 cut(s) | 86, 210 |
| Eco147I | AGGCCT | 1 cut(s) | 1072 |
| Eco24I | GRGCYC | 2 cut(s) | 88, 212 |
| Eco31I | GGTCTC | 1 cut(s) | 189 |
| Eco53kI | GAGCTC | 2 cut(s) | 86, 210 |
| Eco57I | CTGAAG | 1 cut(s) | 827 |
| Eco88I | CYCGRG | 1 cut(s) | 901 |
| EcoICRI | GAGCTC | 2 cut(s) | 86, 210 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 1082 |
| EcoRI | GAATTC | 1 cut(s) | 661 |
| EcoRII | CCWGG | 3 cut(s) | 441, 1077, 1455 |
| EcoT22I | ATGCAT | 2 cut(s) | 143, 530 |
| EcoT38I | GRGCYC | 2 cut(s) | 88, 212 |
| FaeI | CATG | 5 cut(s) | 1025, 1209, 1219, 1324, 1490 |
| FaqI | GGGAC | 1 cut(s) | 1091 |
| FatI | CATG | 5 cut(s) | 1021, 1205, 1215, 1320, 1486 |
| FauI | CCCGC | 1 cut(s) | 1021 |
| FauNDI | CATATG | 1 cut(s) | 471 |
| Fnu4HI | GCNGC | 3 cut(s) | 685, 1026, 1363 |
| FokI | GGATG | 5 cut(s) | 362, 1066, 1298, 1411, 1580 |
| FriOI | GRGCYC | 2 cut(s) | 88, 212 |
| Fsp4HI | GCNGC | 3 cut(s) | 685, 1026, 1363 |
| FspBI | CTAG | 3 cut(s) | 572, 1512, 1536 |
| GluI | GCNGC | 3 cut(s) | 685, 1026, 1363 |
| GsaI | CCCAGC | 2 cut(s) | 96, 774 |
| GsuI | CTGGAG | 1 cut(s) | 839 |
| HaeIII | GGCC | 1 cut(s) | 1072 |
| HapII | CCGG | 3 cut(s) | 29, 862, 1065 |
| HgaI | GACGC | 1 cut(s) | 1509 |
| Hin1I | GRCGYC | 1 cut(s) | 75 |
| Hin1II | CATG | 5 cut(s) | 1025, 1209, 1219, 1324, 1490 |
| HinfI | GANTC | 6 cut(s) | 224, 288, 488, 775, 1118, 1339 |
| HpaII | CCGG | 3 cut(s) | 29, 862, 1065 |
| HphI | GGTGA | 4 cut(s) | 186, 343, 1016, 1349 |
| Hpy166II | GTNNAC | 4 cut(s) | 201, 300, 630, 1266 |
| Hpy188I | TCNGA | 7 cut(s) | 164, 223, 373, 493, 807, 1053, 1185 |
| Hpy188III | TCNNGA | 6 cut(s) | 416, 506, 750, 818, 903, 1065 |
| Hpy8I | GTNNAC | 4 cut(s) | 201, 300, 630, 1266 |
| Hpy99I | CGWCG | 3 cut(s) | 56, 77, 80 |
| HpyAV | CCTTC | 3 cut(s) | 319, 1062, 1217 |
| HpyCH4III | ACNGT | 5 cut(s) | 37, 198, 248, 407, 655 |
| HpyCH4IV | ACGT | 4 cut(s) | 75, 626, 1378, 1560 |
| HpyF10VI | GCNNNNNNNGC | 5 cut(s) | 29, 138, 597, 612, 684 |
| HpyF3I | CTNAG | 2 cut(s) | 206, 211 |
| HpySE526I | ACGT | 4 cut(s) | 75, 626, 1378, 1560 |
| Hsp92I | GRCGYC | 1 cut(s) | 75 |
| Hsp92II | CATG | 5 cut(s) | 1025, 1209, 1219, 1324, 1490 |
| Kpn2I | TCCGGA | 1 cut(s) | 1064 |
| Kzo9I | GATC | 5 cut(s) | 466, 1129, 1210, 1492, 1520 |
| LmnI | GCTCC | 1 cut(s) | 820 |
| Lsp1109I | GCAGC | 2 cut(s) | 696, 1012 |
| LweI | GCATC | 3 cut(s) | 128, 532, 965 |
| MaeI | CTAG | 3 cut(s) | 572, 1512, 1536 |
| MaeII | ACGT | 4 cut(s) | 75, 626, 1378, 1560 |
| MaeIII | GTNAC | 6 cut(s) | 362, 513, 810, 857, 1004, 1561 |
| MalI | GATC | 5 cut(s) | 468, 1131, 1212, 1494, 1522 |
| MboI | GATC | 5 cut(s) | 466, 1129, 1210, 1492, 1520 |
| MboII | GAAGA | 6 cut(s) | 705, 980, 1049, 1299, 1301, 1430 |
| MflI | RGATCY | 3 cut(s) | 1129, 1210, 1492 |
| MhlI | GDGCHC | 3 cut(s) | 67, 88, 212 |
| MlyI | GAGTC | 3 cut(s) | 784, 1127, 1333 |
| MmeI | TCCRAC | 3 cut(s) | 396, 905, 1399 |
| MnlI | CCTC | 7 cut(s) | 198, 304, 664, 863, 958, 1078, 1404 |
| Mph1103I | ATGCAT | 2 cut(s) | 143, 530 |
| MroI | TCCGGA | 1 cut(s) | 1064 |
| MroXI | GAANNNNTTC | 1 cut(s) | 1482 |
| MseI | TTAA | 4 cut(s) | 254, 741, 1314, 1572 |
| MslI | CAYNNNNRTG | 1 cut(s) | 1261 |
| MspI | CCGG | 3 cut(s) | 29, 862, 1065 |
| MspR9I | CCNGG | 3 cut(s) | 443, 1079, 1457 |
| Mva1269I | GAATGC | 3 cut(s) | 530, 615, 1275 |
| MvaI | CCWGG | 3 cut(s) | 443, 1079, 1457 |
| MwoI | GCNNNNNNNGC | 5 cut(s) | 29, 138, 597, 612, 684 |
| NdeI | CATATG | 1 cut(s) | 471 |
| NdeII | GATC | 5 cut(s) | 466, 1129, 1210, 1492, 1520 |
| NlaIII | CATG | 5 cut(s) | 1025, 1209, 1219, 1324, 1490 |
| NlaIV | GGNNCC | 2 cut(s) | 677, 1063 |
| NmuCI | GTSAC | 2 cut(s) | 513, 1004 |
| NsiI | ATGCAT | 2 cut(s) | 143, 530 |
| NspI | RCATGY | 1 cut(s) | 1324 |
| OliI | CACNNNNGTG | 1 cut(s) | 1261 |
| PaeR7I | CTCGAG | 1 cut(s) | 901 |
| PceI | AGGCCT | 1 cut(s) | 1072 |
| PciI | ACATGT | 1 cut(s) | 1320 |
| PctI | GAATGC | 3 cut(s) | 530, 615, 1275 |
| PdmI | GAANNNNTTC | 1 cut(s) | 1482 |
| PfeI | GAWTC | 3 cut(s) | 224, 288, 488 |
| PfoI | TCCNGGA | 1 cut(s) | 441 |
| PkrI | GCNGC | 3 cut(s) | 686, 1027, 1364 |
| PleI | GAGTC | 3 cut(s) | 783, 1126, 1333 |
| PpsI | GAGTC | 3 cut(s) | 783, 1126, 1333 |
| PscI | ACATGT | 1 cut(s) | 1320 |
| Psp124BI | GAGCTC | 2 cut(s) | 88, 212 |
| Psp6I | CCWGG | 3 cut(s) | 441, 1077, 1455 |
| PspFI | CCCAGC | 2 cut(s) | 92, 770 |
| PspGI | CCWGG | 3 cut(s) | 441, 1077, 1455 |
| PspN4I | GGNNCC | 2 cut(s) | 677, 1063 |
| PsuI | RGATCY | 3 cut(s) | 1129, 1210, 1492 |
| RsaI | GTAC | 5 cut(s) | 629, 1013, 1089, 1453, 1534 |
| RsaNI | GTAC | 5 cut(s) | 628, 1012, 1088, 1452, 1533 |
| RseI | CAYNNNNRTG | 1 cut(s) | 1261 |
| SacI | GAGCTC | 2 cut(s) | 88, 212 |
| SaqAI | TTAA | 4 cut(s) | 254, 741, 1314, 1572 |
| SatI | GCNGC | 3 cut(s) | 685, 1026, 1363 |
| Sau3AI | GATC | 5 cut(s) | 466, 1129, 1210, 1492, 1520 |
| SchI | GAGTC | 3 cut(s) | 784, 1127, 1333 |
| ScrFI | CCNGG | 3 cut(s) | 443, 1079, 1457 |
| SduI | GDGCHC | 3 cut(s) | 67, 88, 212 |
| SfaNI | GCATC | 3 cut(s) | 128, 532, 965 |
| Sfr274I | CTCGAG | 1 cut(s) | 901 |
| SlaI | CTCGAG | 1 cut(s) | 901 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 1261 |
| SmlI | CTYRAG | 2 cut(s) | 901, 1280 |
| SmoI | CTYRAG | 2 cut(s) | 901, 1280 |
| SseBI | AGGCCT | 1 cut(s) | 1072 |
| SsiI | CCGC | 6 cut(s) | 148, 347, 613, 1028, 1360, 1363 |
| SspI | AATATT | 1 cut(s) | 1433 |
| SspMI | CTAG | 3 cut(s) | 572, 1512, 1536 |
| SstI | GAGCTC | 2 cut(s) | 88, 212 |
| StuI | AGGCCT | 1 cut(s) | 1072 |
| StyD4I | CCNGG | 3 cut(s) | 441, 1077, 1455 |
| TaaI | ACNGT | 5 cut(s) | 37, 198, 248, 407, 655 |
| TaiI | ACGT | 4 cut(s) | 78, 629, 1381, 1563 |
| TaqI | TCGA | 3 cut(s) | 82, 797, 902 |
| TaqII | GACCGA | 1 cut(s) | 171 |
| TatI | WGTACW | 1 cut(s) | 1011 |
| TauI | GCSGC | 1 cut(s) | 1365 |
| TfiI | GAWTC | 3 cut(s) | 224, 288, 488 |
| Tru1I | TTAA | 4 cut(s) | 254, 741, 1314, 1572 |
| Tru9I | TTAA | 4 cut(s) | 254, 741, 1314, 1572 |
| TscAI | CASTG | 4 cut(s) | 270, 522, 1258, 1597 |
| TseFI | GTSAC | 2 cut(s) | 513, 1004 |
| TseI | GCWGC | 2 cut(s) | 684, 1025 |
| Tsp45I | GTSAC | 2 cut(s) | 513, 1004 |
| TspDTI | ATGAA | 7 cut(s) | 488, 501, 846, 954, 1010, 1302, 1475 |
| TspGWI | ACGGA | 1 cut(s) | 1580 |
| TspRI | CASTG | 4 cut(s) | 270, 522, 1258, 1597 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 1082 |
| XapI | RAATTY | 4 cut(s) | 552, 661, 1016, 1478 |
| XceI | RCATGY | 1 cut(s) | 1324 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 1514 |
| XhoI | CTCGAG | 1 cut(s) | 901 |
| XmnI | GAANNNNTTC | 1 cut(s) | 1482 |
| XspI | CTAG | 3 cut(s) | 572, 1512, 1536 |
| ZraI | GACGTC | 1 cut(s) | 76 |
| Zsp2I | ATGCAT | 2 cut(s) | 143, 530 |