Rh6CG452300

tRNA pseudouridine synthase

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6C
Physical Location & Seq
Reverse (-)
62898952 .. 62905359
6408 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6CG452300.1

Sequence Viewer

Length: 1599 bp
ATGGCAACAGAAATTGCAAAGGCTTCTCCGGCGACCGTCAATGTCATTGGCGACGATGTGGGGGCACTCTACGACGTCGTTCGAGCTCTGCCCAGCCACGCCGTGATTGAGTTATTCTCAATAGGGGTATGCACCAGATGCATTTTGCGGTTGTTTGGGGTCAGAGAGAGCGTGCATTATCGGTCTCCTCTATCACCGTCCACGCTGAGCTCAGTTTTTTCGGATTCAACCGACTTGGACAACCACAGTAGTTTAAGAGAGCCAGTGGTTTGTAGGCTTTGTTTAGGAATCTTGCAGTTTACTTATTGTGAGGATAAGGATAAGAAGGTGGTGAGAAAGGAGAGTGCGGATGGGTTGGCTGGTTACATTTCCGACCTGATTAGGGAACAGGGATTTGAGATTGACGGTTTTTCTCTTGAAGTGTCTATACCACCAGTTATCCTGGAAAACGAACGCATTGTTTGGGATCATATGAAAACAAAGTATGAATCTGAACATTGGTTTCAAGAAAGGTCACTGCCTGAATGCATTTCTGTAAAAGATGCTTTGAAAATTTCTCTTACTGAAACCCTAGAAACAAAGCTGGATTGCAAATCAAGCATAGGCACTTTCCGCATTCGTTTGACGTACACATACCCTATATCATCAAAAACAGTTGAGAATTCTGTTGAGGGGTGCCACGGCAGCAAAAGAAGAAAAACAGGCACACATAATGGTTTGGACACAAGAGATGATGACATTAAACGCTCTGGATTTTCAACAAGTGAAGCTGGGAGTCTGCAAGCTATTGAATTGTCGAAATGTCTGAAGTTACATCTGGAGCAGACCAATGAACCTTGCTGTTTGGAGTTCCTCTGTTACCGGACACAAATATACTTTGGTGGGAGATACCTAAAATACTCGAGAAATGTAAGTCAAAGCTGTTGGATTATTGATGATGAAAGAATGGGAGAAGCATCTGTTGAGGAAATAATGGGTAGCAACATTCTTCCTATATGTCGTGGTGACAAGTACAAATTTCATGCTGCGGGCAGAGAAGATATTGATGTTCGGATGTTGGGTTCCGGAAGGCCTTTCCTGGTTGAGGTACAAAATGCACGCTATGTCCCATCGCAGGAGTCTGTAAAAGATCTGCAAACAAAGATAAATAATTTGCAAAATAAATTGGTTGGTGTGAAAAATCTGAAACTGGTGGGCAGTCAATCATGGGATCTCATGCGTGAAGGAGAAGCAGAGAAACAGAAGCAATACACTGCACTTGTGTGGACTTCTCGCATTCTCAAGGATGAAGACTTGCAGTCTATATCTTCAATTAAGGACATGTGTATTCTGCAAAGGACTCCAATCAGGGTGCTTCACCGCCGCAGTCCATTGGAACGTGAAAAGATTATACATTGGATGAGAATTGAGAGGATTGTTGGAAGTTCTCAATATTTTCTTCTGCACCTATGTACCCAGGCTGGAACATATATCAAGGAATTTGTTCATGGGGATCTTGGACGCACCCAACCTAGCTTTGGATCAATTCTTGGTACTAGAGCAGAGATACTGCGACTTGACGTAACGGATGTTAAAATGGATTGTTTTCTCACTGAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

532

Amino Acids

60.32

Weight (kDa)

6.53

Isoelectric Point (pI)

52.03

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pus10_N_euk PF21237 91 - 219 1.2e-07 Eukaryotic Pus10, N-terminal
Pus10_C PF21238 292 - 524 4.7e-84 Pus10, C-terminal
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 78
AccB1I GGYRCC 1 cut(s) 675
AccIII TCCGGA 1 cut(s) 1064
AciI CCGC 6 cut(s) 148, 347, 613, 1028, 1360, 1363
AclWI GGATC 4 cut(s) 474, 1218, 1500, 1528
AcsI RAATTY 4 cut(s) 552, 661, 1016, 1478
AcuI CTGAAG 1 cut(s) 827
AcyI GRCGYC 1 cut(s) 75
AdeI CACNNNGTG 1 cut(s) 103
AfaI GTAC 5 cut(s) 629, 1013, 1089, 1453, 1534
AfiI CCNNNNNNNGG 4 cut(s) 382, 1084, 1114, 1517
AflIII ACRYGT 1 cut(s) 1320
AgsI TTSAA 7 cut(s) 228, 419, 506, 550, 759, 791, 1311
AhdI GACNNNNNGTC 1 cut(s) 1297
AjnI CCWGG 3 cut(s) 441, 1077, 1455
AleI CACNNNNGTG 1 cut(s) 1261
AloI GAACNNNNNNTCC 2 cut(s) 1045, 1077
AluBI AGCT 7 cut(s) 86, 210, 583, 770, 785, 921, 1515
AluI AGCT 7 cut(s) 86, 210, 583, 770, 785, 921, 1515
Alw21I GWGCWC 2 cut(s) 88, 212
Alw26I GTCTC 1 cut(s) 189
AlwI GGATC 4 cut(s) 474, 1218, 1500, 1528
Ama87I CYCGRG 1 cut(s) 901
Aor13HI TCCGGA 1 cut(s) 1064
AoxI GGCC 1 cut(s) 1070
ApeKI GCWGC 2 cut(s) 684, 1025
ApoI RAATTY 4 cut(s) 552, 661, 1016, 1478
Asp700I GAANNNNTTC 1 cut(s) 1482
AsuHPI GGTGA 4 cut(s) 186, 343, 1016, 1349
AvaI CYCGRG 1 cut(s) 901
BaeGI GKGCMC 1 cut(s) 67
BaeI ACNNNNGTAYC 2 cut(s) 1435, 1468
BanI GGYRCC 1 cut(s) 675
BanII GRGCYC 2 cut(s) 88, 212
BarI GAAGNNNNNNTAC 2 cut(s) 411, 443
BbsI GAAGAC 1 cut(s) 1296
Bbv12I GWGCWC 2 cut(s) 88, 212
BbvI GCAGC 2 cut(s) 696, 1012
BccI CCATC 2 cut(s) 344, 1117
BceAI ACGGC 2 cut(s) 86, 697
BciT130I CCWGG 3 cut(s) 443, 1079, 1457
BcoDI GTCTC 1 cut(s) 189
BfaI CTAG 3 cut(s) 572, 1512, 1536
BglII AGATCT 1 cut(s) 1129
BisI GCNGC 3 cut(s) 685, 1026, 1363
BlpI GCTNAGC 1 cut(s) 206
BlsI GCNGC 3 cut(s) 686, 1027, 1364
Bme1390I CCNGG 3 cut(s) 443, 1079, 1457
BmeRI GACNNNNNGTC 1 cut(s) 1297
BmeT110I CYCGRG 1 cut(s) 901
BmiI GGNNCC 2 cut(s) 677, 1063
BmrFI CCNGG 3 cut(s) 443, 1079, 1457
BmsI GCATC 3 cut(s) 128, 532, 965
BpiI GAAGAC 1 cut(s) 1296
BplI GAGNNNNNCTC 2 cut(s) 101, 133
BpmI CTGGAG 1 cut(s) 839
Bpu1102I GCTNAGC 1 cut(s) 206
BpuEI CTTGAG 1 cut(s) 1265
BsaHI GRCGYC 1 cut(s) 75
BsaI GGTCTC 1 cut(s) 189
BsaJI CCNNGG 2 cut(s) 679, 1455
BsaWI WCCGGW 2 cut(s) 861, 1064
Bsc4I CCNNNNNNNGG 4 cut(s) 382, 1084, 1114, 1517
Bse1I ACTGG 3 cut(s) 263, 434, 1194
BseAI TCCGGA 1 cut(s) 1064
BseBI CCWGG 3 cut(s) 443, 1079, 1457
BseDI CCNNGG 2 cut(s) 679, 1455
BseGI GGATG 5 cut(s) 355, 1059, 1291, 1404, 1573
BseLI CCNNNNNNNGG 4 cut(s) 382, 1084, 1114, 1517
BseMII CTCAG 2 cut(s) 197, 225
BseNI ACTGG 3 cut(s) 263, 434, 1194
BseRI GAGGAG 1 cut(s) 177
BseSI GKGCMC 1 cut(s) 67
BseXI GCAGC 2 cut(s) 696, 1012
BseYI CCCAGC 2 cut(s) 92, 770
BsgI GTGCAG 2 cut(s) 1239, 1427
Bsh1285I CGRYCG 1 cut(s) 36
BshFI GGCC 1 cut(s) 1072
BshNI GGYRCC 1 cut(s) 675
BsiEI CGRYCG 1 cut(s) 36
BsiHKAI GWGCWC 2 cut(s) 88, 212
BsiHKCI CYCGRG 1 cut(s) 901
BsiSI CCGG 3 cut(s) 29, 862, 1065
BslFI GGGAC 1 cut(s) 1091
BslI CCNNNNNNNGG 4 cut(s) 382, 1084, 1114, 1517
BsmAI GTCTC 1 cut(s) 189
BsmFI GGGAC 1 cut(s) 1091
BsmI GAATGC 3 cut(s) 530, 615, 1275
BsnI GGCC 1 cut(s) 1072
Bso31I GGTCTC 1 cut(s) 189
BsoBI CYCGRG 1 cut(s) 901
Bsp1286I GDGCHC 3 cut(s) 67, 88, 212
Bsp13I TCCGGA 1 cut(s) 1064
Bsp143I GATC 5 cut(s) 466, 1129, 1210, 1492, 1520
Bsp1720I GCTNAGC 1 cut(s) 206
BspACI CCGC 6 cut(s) 148, 347, 613, 1028, 1360, 1363
BspANI GGCC 1 cut(s) 1072
BspCNI CTCAG 2 cut(s) 198, 224
BspEI TCCGGA 1 cut(s) 1064
BspLI GGNNCC 2 cut(s) 677, 1063
BspPI GGATC 4 cut(s) 474, 1218, 1500, 1528
BspT107I GGYRCC 1 cut(s) 675
BspTNI GGTCTC 1 cut(s) 189
BsrI ACTGG 3 cut(s) 263, 434, 1194
BssECI CCNNGG 2 cut(s) 679, 1455
BssMI GATC 5 cut(s) 466, 1129, 1210, 1492, 1520
BssNI GRCGYC 1 cut(s) 75
Bst2UI CCWGG 3 cut(s) 443, 1079, 1457
Bst4CI ACNGT 5 cut(s) 37, 198, 248, 407, 655
BstACI GRCGYC 1 cut(s) 75
BstAPI GCANNNNNTGC 1 cut(s) 138
BstC8I GCNNGC 4 cut(s) 173, 783, 1030, 1099
BstDEI CTNAG 2 cut(s) 206, 211
BstDSI CCRYGG 1 cut(s) 679
BstENI CCTNNNNNAGG 1 cut(s) 1082
BstF5I GGATG 5 cut(s) 355, 1059, 1291, 1404, 1573
BstKTI GATC 5 cut(s) 469, 1132, 1213, 1495, 1523
BstMAI GTCTC 1 cut(s) 189
BstMBI GATC 5 cut(s) 466, 1129, 1210, 1492, 1520
BstMCI CGRYCG 1 cut(s) 36
BstMWI GCNNNNNNNGC 5 cut(s) 29, 138, 597, 612, 684
BstNI CCWGG 3 cut(s) 443, 1079, 1457
BstNSI RCATGY 1 cut(s) 1324
BstSCI CCNGG 3 cut(s) 441, 1077, 1455
BstSLI GKGCMC 1 cut(s) 67
BstV1I GCAGC 2 cut(s) 696, 1012
BstV2I GAAGAC 1 cut(s) 1296
BstX2I RGATCY 3 cut(s) 1129, 1210, 1492
BstYI RGATCY 3 cut(s) 1129, 1210, 1492
BsuRI GGCC 1 cut(s) 1072
BtgI CCRYGG 1 cut(s) 679
BtgZI GCGATG 1 cut(s) 1095
BtsCI GGATG 5 cut(s) 355, 1059, 1291, 1404, 1573
BtsI GCAGTG 2 cut(s) 515, 1251
BtsIMutI CAGTG 4 cut(s) 270, 515, 1251, 1590
Cac8I GCNNGC 4 cut(s) 173, 783, 1030, 1099
CseI GACGC 1 cut(s) 1509
Csp6I GTAC 5 cut(s) 628, 1012, 1088, 1452, 1533
CviAII CATG 5 cut(s) 1022, 1206, 1216, 1321, 1487
CviQI GTAC 5 cut(s) 628, 1012, 1088, 1452, 1533
DdeI CTNAG 2 cut(s) 206, 211
DpnI GATC 5 cut(s) 468, 1131, 1212, 1494, 1522
DpnII GATC 5 cut(s) 466, 1129, 1210, 1492, 1520
DraIII CACNNNGTG 1 cut(s) 103
DriI GACNNNNNGTC 1 cut(s) 1297
Eam1105I GACNNNNNGTC 1 cut(s) 1297
Ecl136II GAGCTC 2 cut(s) 86, 210
Eco147I AGGCCT 1 cut(s) 1072
Eco24I GRGCYC 2 cut(s) 88, 212
Eco31I GGTCTC 1 cut(s) 189
Eco53kI GAGCTC 2 cut(s) 86, 210
Eco57I CTGAAG 1 cut(s) 827
Eco88I CYCGRG 1 cut(s) 901
EcoICRI GAGCTC 2 cut(s) 86, 210
EcoNI CCTNNNNNAGG 1 cut(s) 1082
EcoRI GAATTC 1 cut(s) 661
EcoRII CCWGG 3 cut(s) 441, 1077, 1455
EcoT22I ATGCAT 2 cut(s) 143, 530
EcoT38I GRGCYC 2 cut(s) 88, 212
FaeI CATG 5 cut(s) 1025, 1209, 1219, 1324, 1490
FaqI GGGAC 1 cut(s) 1091
FatI CATG 5 cut(s) 1021, 1205, 1215, 1320, 1486
FauI CCCGC 1 cut(s) 1021
FauNDI CATATG 1 cut(s) 471
Fnu4HI GCNGC 3 cut(s) 685, 1026, 1363
FokI GGATG 5 cut(s) 362, 1066, 1298, 1411, 1580
FriOI GRGCYC 2 cut(s) 88, 212
Fsp4HI GCNGC 3 cut(s) 685, 1026, 1363
FspBI CTAG 3 cut(s) 572, 1512, 1536
GluI GCNGC 3 cut(s) 685, 1026, 1363
GsaI CCCAGC 2 cut(s) 96, 774
GsuI CTGGAG 1 cut(s) 839
HaeIII GGCC 1 cut(s) 1072
HapII CCGG 3 cut(s) 29, 862, 1065
HgaI GACGC 1 cut(s) 1509
Hin1I GRCGYC 1 cut(s) 75
Hin1II CATG 5 cut(s) 1025, 1209, 1219, 1324, 1490
HinfI GANTC 6 cut(s) 224, 288, 488, 775, 1118, 1339
HpaII CCGG 3 cut(s) 29, 862, 1065
HphI GGTGA 4 cut(s) 186, 343, 1016, 1349
Hpy166II GTNNAC 4 cut(s) 201, 300, 630, 1266
Hpy188I TCNGA 7 cut(s) 164, 223, 373, 493, 807, 1053, 1185
Hpy188III TCNNGA 6 cut(s) 416, 506, 750, 818, 903, 1065
Hpy8I GTNNAC 4 cut(s) 201, 300, 630, 1266
Hpy99I CGWCG 3 cut(s) 56, 77, 80
HpyAV CCTTC 3 cut(s) 319, 1062, 1217
HpyCH4III ACNGT 5 cut(s) 37, 198, 248, 407, 655
HpyCH4IV ACGT 4 cut(s) 75, 626, 1378, 1560
HpyF10VI GCNNNNNNNGC 5 cut(s) 29, 138, 597, 612, 684
HpyF3I CTNAG 2 cut(s) 206, 211
HpySE526I ACGT 4 cut(s) 75, 626, 1378, 1560
Hsp92I GRCGYC 1 cut(s) 75
Hsp92II CATG 5 cut(s) 1025, 1209, 1219, 1324, 1490
Kpn2I TCCGGA 1 cut(s) 1064
Kzo9I GATC 5 cut(s) 466, 1129, 1210, 1492, 1520
LmnI GCTCC 1 cut(s) 820
Lsp1109I GCAGC 2 cut(s) 696, 1012
LweI GCATC 3 cut(s) 128, 532, 965
MaeI CTAG 3 cut(s) 572, 1512, 1536
MaeII ACGT 4 cut(s) 75, 626, 1378, 1560
MaeIII GTNAC 6 cut(s) 362, 513, 810, 857, 1004, 1561
MalI GATC 5 cut(s) 468, 1131, 1212, 1494, 1522
MboI GATC 5 cut(s) 466, 1129, 1210, 1492, 1520
MboII GAAGA 6 cut(s) 705, 980, 1049, 1299, 1301, 1430
MflI RGATCY 3 cut(s) 1129, 1210, 1492
MhlI GDGCHC 3 cut(s) 67, 88, 212
MlyI GAGTC 3 cut(s) 784, 1127, 1333
MmeI TCCRAC 3 cut(s) 396, 905, 1399
MnlI CCTC 7 cut(s) 198, 304, 664, 863, 958, 1078, 1404
Mph1103I ATGCAT 2 cut(s) 143, 530
MroI TCCGGA 1 cut(s) 1064
MroXI GAANNNNTTC 1 cut(s) 1482
MseI TTAA 4 cut(s) 254, 741, 1314, 1572
MslI CAYNNNNRTG 1 cut(s) 1261
MspI CCGG 3 cut(s) 29, 862, 1065
MspR9I CCNGG 3 cut(s) 443, 1079, 1457
Mva1269I GAATGC 3 cut(s) 530, 615, 1275
MvaI CCWGG 3 cut(s) 443, 1079, 1457
MwoI GCNNNNNNNGC 5 cut(s) 29, 138, 597, 612, 684
NdeI CATATG 1 cut(s) 471
NdeII GATC 5 cut(s) 466, 1129, 1210, 1492, 1520
NlaIII CATG 5 cut(s) 1025, 1209, 1219, 1324, 1490
NlaIV GGNNCC 2 cut(s) 677, 1063
NmuCI GTSAC 2 cut(s) 513, 1004
NsiI ATGCAT 2 cut(s) 143, 530
NspI RCATGY 1 cut(s) 1324
OliI CACNNNNGTG 1 cut(s) 1261
PaeR7I CTCGAG 1 cut(s) 901
PceI AGGCCT 1 cut(s) 1072
PciI ACATGT 1 cut(s) 1320
PctI GAATGC 3 cut(s) 530, 615, 1275
PdmI GAANNNNTTC 1 cut(s) 1482
PfeI GAWTC 3 cut(s) 224, 288, 488
PfoI TCCNGGA 1 cut(s) 441
PkrI GCNGC 3 cut(s) 686, 1027, 1364
PleI GAGTC 3 cut(s) 783, 1126, 1333
PpsI GAGTC 3 cut(s) 783, 1126, 1333
PscI ACATGT 1 cut(s) 1320
Psp124BI GAGCTC 2 cut(s) 88, 212
Psp6I CCWGG 3 cut(s) 441, 1077, 1455
PspFI CCCAGC 2 cut(s) 92, 770
PspGI CCWGG 3 cut(s) 441, 1077, 1455
PspN4I GGNNCC 2 cut(s) 677, 1063
PsuI RGATCY 3 cut(s) 1129, 1210, 1492
RsaI GTAC 5 cut(s) 629, 1013, 1089, 1453, 1534
RsaNI GTAC 5 cut(s) 628, 1012, 1088, 1452, 1533
RseI CAYNNNNRTG 1 cut(s) 1261
SacI GAGCTC 2 cut(s) 88, 212
SaqAI TTAA 4 cut(s) 254, 741, 1314, 1572
SatI GCNGC 3 cut(s) 685, 1026, 1363
Sau3AI GATC 5 cut(s) 466, 1129, 1210, 1492, 1520
SchI GAGTC 3 cut(s) 784, 1127, 1333
ScrFI CCNGG 3 cut(s) 443, 1079, 1457
SduI GDGCHC 3 cut(s) 67, 88, 212
SfaNI GCATC 3 cut(s) 128, 532, 965
Sfr274I CTCGAG 1 cut(s) 901
SlaI CTCGAG 1 cut(s) 901
SmiMI CAYNNNNRTG 1 cut(s) 1261
SmlI CTYRAG 2 cut(s) 901, 1280
SmoI CTYRAG 2 cut(s) 901, 1280
SseBI AGGCCT 1 cut(s) 1072
SsiI CCGC 6 cut(s) 148, 347, 613, 1028, 1360, 1363
SspI AATATT 1 cut(s) 1433
SspMI CTAG 3 cut(s) 572, 1512, 1536
SstI GAGCTC 2 cut(s) 88, 212
StuI AGGCCT 1 cut(s) 1072
StyD4I CCNGG 3 cut(s) 441, 1077, 1455
TaaI ACNGT 5 cut(s) 37, 198, 248, 407, 655
TaiI ACGT 4 cut(s) 78, 629, 1381, 1563
TaqI TCGA 3 cut(s) 82, 797, 902
TaqII GACCGA 1 cut(s) 171
TatI WGTACW 1 cut(s) 1011
TauI GCSGC 1 cut(s) 1365
TfiI GAWTC 3 cut(s) 224, 288, 488
Tru1I TTAA 4 cut(s) 254, 741, 1314, 1572
Tru9I TTAA 4 cut(s) 254, 741, 1314, 1572
TscAI CASTG 4 cut(s) 270, 522, 1258, 1597
TseFI GTSAC 2 cut(s) 513, 1004
TseI GCWGC 2 cut(s) 684, 1025
Tsp45I GTSAC 2 cut(s) 513, 1004
TspDTI ATGAA 7 cut(s) 488, 501, 846, 954, 1010, 1302, 1475
TspGWI ACGGA 1 cut(s) 1580
TspRI CASTG 4 cut(s) 270, 522, 1258, 1597
XagI CCTNNNNNAGG 1 cut(s) 1082
XapI RAATTY 4 cut(s) 552, 661, 1016, 1478
XceI RCATGY 1 cut(s) 1324
XcmI CCANNNNNNNNNTGG 1 cut(s) 1514
XhoI CTCGAG 1 cut(s) 901
XmnI GAANNNNTTC 1 cut(s) 1482
XspI CTAG 3 cut(s) 572, 1512, 1536
ZraI GACGTC 1 cut(s) 76
Zsp2I ATGCAT 2 cut(s) 143, 530
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.