Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6D

Orthogroup ID

OG0006609

Physical Location & Seq

Genomic Coordinates Reverse (-)

61586340 .. 61590215

Gene Structure 3876 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6DG439300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1329 bp

ATGGCAACAGAAATTGCAGAGGCTTCTCCGGCGACCGTCAATGGCGACAATGTGCGGGCACTCTACGACGTCGTTCGAGCTCTGCCCAGCCACGCCGTGATTGAGTTATTCTCAATAGGGGTATGCACCAGATGCATTTTGCGGTTGTTTGGGGTCAGAGAGAGCGTGCATTATCGGCCTCCACTATCACCGTCGATGCTGAGCTCAGTTTTTTTGGATTCAACCAATTTGGACAACCACAGTAGTTTAAGAGAGCCGGTGGTTTGTAGGCTTTGTTTAGGAATCTTGCAGTTTACTTATTGTGAGGATAAGGATAAGAAGGTAGTGAGAAAGGAGAGTGCGGATGGGTTGGCTGGTTACATTTCTGACCTGATTAGGGAACAGGGATTTGAGATTGACGGTTTTTCTCTTGAAGTGTCTATACCACCGGTTATCCTGGAAAACGAACGCATTGTTTGGGATCATATGAAAACAAAGTATGAATCTGAACATTGGTTTCAAGAAAGGTCACTGCCTGAATGCATTTCTGCAAAAGATGCTTTGAAAATTTCTCTTACTGAAACCCTAGAAACAAAGCTGGATTGCAAATCAAGCATAGGCACTTTCCGCATTCGTTTGACGTACACATACCCTATATCATCAAAAACAGTTGAGAATTCTGTTGAGGGGTTCCACGGCAGCAAAAGAAGAAAAACAGGCACACATAATGGTTTGGACACAAGAGATGATGACATTAAATGCTCTGGATTTTCAACAAGTGAAGCTGGGAGTCTGCAAGCTATTGAATTGTCGAAATGTCTGAAGTTACGTCTGGAGCAGACCAATGAACCTTGCTGTTTGGAGTTCCTCTGTTACCGGACACAAATATACTTTGGTGGGAGATACCTAAAGTACTCGAGAAATGTAAGTCAAAGCTGTTGGATTATTGATGATGAAAGAATGGGAGAAGCATCTGTTGAGGAAATAATGGGTAGCAACATTCTTCCTATATGTCGTGGTGACAAGTACAAATTTCATGCTGCGGGCAGAGAAGATATTGATGTTCGGATGTTGGGTTCCGGAAGGCCTTTCCTGGTTGAGGTACAAAATGCGCGCTATGTCCCATCGCAGGAGTCTGTAAAAGATCTGCAAACAAAGATAAATAATTTGCAAAATAAATTGGTTGGTGTGAAAAATCTGAAACTGGTGGGCAGTCAATCATGGGATCTCATGCGTGAAGGAGAAGCAGAGAAACAGAAGCAATACACTGCACTTGTGTGGACTTCTCGCATTCTCAAGGATGAAGACTTGCAGTCTATATCTTCAATTAAGGACATGGTGAGCTGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

442

Amino Acids

49.95

Weight (kDa)

6.01

Isoelectric Point (pI)

48.68

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pus10_N_euk	PF21237	89 - 214	9.5e-07	Eukaryotic Pus10, N-terminal
Pus10_C	PF21238	290 - 439	1.9e-44	Pus10, C-terminal

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006609)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G20410 AT1G20410
fragaria_vesca	FvH4_2g37810 FvH4_2g37810 FvH4_2g37810 FvH4_2g37810 FvH4_2g37810 FvH4_2g37810 FvH4_2g37810
malus_domestica	MD08G1005300.v1.1 MD15G1004600.v1.1 MD15G1004800.v1.1
prunus_persica	Prupe.1G357400_v2.0.a1 Prupe.1G357400_v2.0.a1 Prupe.1G357400_v2.0.a1
rosa_chinensis	RchiOBHm_Chr6g0303901
rosa_laevigata	RLG00000011036
rosa_multiflora	Rmu_co8406005.1_g000001
rosa_roxburghii	Rroxscaffold_7G00164290
rosa_rugosa	Rorug06G0325700 Rorug06G0325800
rosa_samantha	Rh6AG440000 Rh6BG463000 Rh6CG452300 Rh6DG439300
rosa_wichuraiana	Rw6G038100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	72
AccII	CGCG	1 cut(s)	1093
AccIII	TCCGGA	1 cut(s)	1058
AciI	CCGC	5 cut(s)	55, 142, 341, 607, 1022
AclWI	GGATC	2 cut(s)	468, 1212
AcsI	RAATTY	3 cut(s)	546, 655, 1010
AcuI	CTGAAG	1 cut(s)	821
AcyI	GRCGYC	1 cut(s)	69
AdeI	CACNNNGTG	1 cut(s)	97
AfaI	GTAC	4 cut(s)	623, 893, 1007, 1083
AfiI	CCNNNNNNNGG	3 cut(s)	376, 1078, 1108
AgeI	ACCGGT	1 cut(s)	427
AgsI	TTSAA	7 cut(s)	222, 413, 500, 544, 753, 785, 1305
AhdI	GACNNNNNGTC	1 cut(s)	1291
AjnI	CCWGG	2 cut(s)	435, 1071
AleI	CACNNNNGTG	1 cut(s)	1255
AloI	GAACNNNNNNTCC	2 cut(s)	1039, 1071
AluBI	AGCT	7 cut(s)	80, 204, 577, 764, 779, 915, 1323
AluI	AGCT	7 cut(s)	80, 204, 577, 764, 779, 915, 1323
Alw21I	GWGCWC	2 cut(s)	82, 206
AlwI	GGATC	2 cut(s)	468, 1212
Ama87I	CYCGRG	1 cut(s)	895
Aor13HI	TCCGGA	1 cut(s)	1058
AoxI	GGCC	2 cut(s)	176, 1064
ApeKI	GCWGC	2 cut(s)	678, 1019
ApoI	RAATTY	3 cut(s)	546, 655, 1010
AsiGI	ACCGGT	1 cut(s)	427
AspLEI	GCGC	2 cut(s)	1093, 1095
AsuHPI	GGTGA	2 cut(s)	180, 1010
AvaI	CYCGRG	1 cut(s)	895
BaeGI	GKGCMC	1 cut(s)	61
BanII	GRGCYC	2 cut(s)	82, 206
BarI	GAAGNNNNNNTAC	2 cut(s)	405, 437
BbsI	GAAGAC	1 cut(s)	1290
Bbv12I	GWGCWC	2 cut(s)	82, 206
BbvI	GCAGC	2 cut(s)	690, 1006
BccI	CCATC	2 cut(s)	338, 1111
BceAI	ACGGC	2 cut(s)	80, 691
BciT130I	CCWGG	2 cut(s)	437, 1073
BfaI	CTAG	1 cut(s)	566
BglII	AGATCT	1 cut(s)	1123
BisI	GCNGC	2 cut(s)	679, 1020
BlpI	GCTNAGC	1 cut(s)	200
BlsI	GCNGC	2 cut(s)	680, 1021
BmcAI	AGTACT	1 cut(s)	893
Bme1390I	CCNGG	2 cut(s)	437, 1073
BmeRI	GACNNNNNGTC	1 cut(s)	1291
BmeT110I	CYCGRG	1 cut(s)	895
BmiI	GGNNCC	2 cut(s)	671, 1057
BmrFI	CCNGG	2 cut(s)	437, 1073
BmsI	GCATC	4 cut(s)	122, 186, 526, 959
BpiI	GAAGAC	1 cut(s)	1290
BplI	GAGNNNNNCTC	2 cut(s)	95, 127
BpmI	CTGGAG	1 cut(s)	833
Bpu1102I	GCTNAGC	1 cut(s)	200
BpuEI	CTTGAG	1 cut(s)	1259
BsaHI	GRCGYC	1 cut(s)	69
BsaJI	CCNNGG	1 cut(s)	673
BsaWI	WCCGGW	3 cut(s)	427, 855, 1058
Bsc4I	CCNNNNNNNGG	3 cut(s)	376, 1078, 1108
Bse118I	RCCGGY	2 cut(s)	256, 427
Bse1I	ACTGG	1 cut(s)	1188
BseAI	TCCGGA	1 cut(s)	1058
BseBI	CCWGG	2 cut(s)	437, 1073
BseDI	CCNNGG	1 cut(s)	673
BseGI	GGATG	3 cut(s)	349, 1053, 1285
BseLI	CCNNNNNNNGG	3 cut(s)	376, 1078, 1108
BseMII	CTCAG	2 cut(s)	191, 219
BseNI	ACTGG	1 cut(s)	1188
BsePI	GCGCGC	1 cut(s)	1091
BseSI	GKGCMC	1 cut(s)	61
BseXI	GCAGC	2 cut(s)	690, 1006
BseYI	CCCAGC	2 cut(s)	86, 764
BsgI	GTGCAG	1 cut(s)	1233
Bsh1236I	CGCG	1 cut(s)	1093
Bsh1285I	CGRYCG	1 cut(s)	36
BshFI	GGCC	2 cut(s)	178, 1066
BshTI	ACCGGT	1 cut(s)	427
BsiEI	CGRYCG	1 cut(s)	36
BsiHKAI	GWGCWC	2 cut(s)	82, 206
BsiHKCI	CYCGRG	1 cut(s)	895
BsiSI	CCGG	5 cut(s)	29, 257, 428, 856, 1059
BslFI	GGGAC	1 cut(s)	1085
BslI	CCNNNNNNNGG	3 cut(s)	376, 1078, 1108
BsmFI	GGGAC	1 cut(s)	1085
BsmI	GAATGC	3 cut(s)	524, 609, 1269
BsnI	GGCC	2 cut(s)	178, 1066
BsoBI	CYCGRG	1 cut(s)	895
Bsp1286I	GDGCHC	3 cut(s)	61, 82, 206
Bsp13I	TCCGGA	1 cut(s)	1058
Bsp143I	GATC	3 cut(s)	460, 1123, 1204
Bsp1720I	GCTNAGC	1 cut(s)	200
BspACI	CCGC	5 cut(s)	55, 142, 341, 607, 1022
BspANI	GGCC	2 cut(s)	178, 1066
BspCNI	CTCAG	2 cut(s)	192, 218
BspEI	TCCGGA	1 cut(s)	1058
BspFNI	CGCG	1 cut(s)	1093
BspLI	GGNNCC	2 cut(s)	671, 1057
BspPI	GGATC	2 cut(s)	468, 1212
BsrFI	RCCGGY	2 cut(s)	256, 427
BsrI	ACTGG	1 cut(s)	1188
BssAI	RCCGGY	2 cut(s)	256, 427
BssECI	CCNNGG	1 cut(s)	673
BssHII	GCGCGC	1 cut(s)	1091
BssMI	GATC	3 cut(s)	460, 1123, 1204
BssNI	GRCGYC	1 cut(s)	69
Bst2UI	CCWGG	2 cut(s)	437, 1073
Bst4CI	ACNGT	5 cut(s)	37, 192, 242, 401, 649
BstACI	GRCGYC	1 cut(s)	69
BstAPI	GCANNNNNTGC	2 cut(s)	132, 536
BstC8I	GCNNGC	5 cut(s)	57, 167, 777, 1024, 1093
BstDEI	CTNAG	2 cut(s)	200, 205
BstDSI	CCRYGG	1 cut(s)	673
BstENI	CCTNNNNNAGG	1 cut(s)	1076
BstF5I	GGATG	3 cut(s)	349, 1053, 1285
BstFNI	CGCG	1 cut(s)	1093
BstHHI	GCGC	2 cut(s)	1093, 1095
BstKTI	GATC	3 cut(s)	463, 1126, 1207
BstMBI	GATC	3 cut(s)	460, 1123, 1204
BstMCI	CGRYCG	1 cut(s)	36
BstMWI	GCNNNNNNNGC	6 cut(s)	29, 132, 175, 536, 591, 606
BstNI	CCWGG	2 cut(s)	437, 1073
BstSCI	CCNGG	2 cut(s)	435, 1071
BstSLI	GKGCMC	1 cut(s)	61
BstUI	CGCG	1 cut(s)	1093
BstV1I	GCAGC	2 cut(s)	690, 1006
BstV2I	GAAGAC	1 cut(s)	1290
BstX2I	RGATCY	2 cut(s)	1123, 1204
BstYI	RGATCY	2 cut(s)	1123, 1204
BsuRI	GGCC	2 cut(s)	178, 1066
BtgI	CCRYGG	1 cut(s)	673
BtgZI	GCGATG	1 cut(s)	1089
BtsCI	GGATG	3 cut(s)	349, 1053, 1285
BtsI	GCAGTG	2 cut(s)	509, 1245
BtsIMutI	CAGTG	2 cut(s)	509, 1245
Cac8I	GCNNGC	5 cut(s)	57, 167, 777, 1024, 1093
CfoI	GCGC	2 cut(s)	1093, 1095
Cfr10I	RCCGGY	2 cut(s)	256, 427
Csp6I	GTAC	4 cut(s)	622, 892, 1006, 1082
CspAI	ACCGGT	1 cut(s)	427
CviAII	CATG	4 cut(s)	1016, 1200, 1210, 1315
CviQI	GTAC	4 cut(s)	622, 892, 1006, 1082
DdeI	CTNAG	2 cut(s)	200, 205
DpnI	GATC	3 cut(s)	462, 1125, 1206
DpnII	GATC	3 cut(s)	460, 1123, 1204
DraIII	CACNNNGTG	1 cut(s)	97
DriI	GACNNNNNGTC	1 cut(s)	1291
Eam1105I	GACNNNNNGTC	1 cut(s)	1291
Ecl136II	GAGCTC	2 cut(s)	80, 204
Eco147I	AGGCCT	1 cut(s)	1066
Eco24I	GRGCYC	2 cut(s)	82, 206
Eco53kI	GAGCTC	2 cut(s)	80, 204
Eco57I	CTGAAG	1 cut(s)	821
Eco88I	CYCGRG	1 cut(s)	895
EcoICRI	GAGCTC	2 cut(s)	80, 204
EcoNI	CCTNNNNNAGG	1 cut(s)	1076
EcoRI	GAATTC	1 cut(s)	655
EcoRII	CCWGG	2 cut(s)	435, 1071
EcoT22I	ATGCAT	2 cut(s)	137, 524
EcoT38I	GRGCYC	2 cut(s)	82, 206
FaeI	CATG	4 cut(s)	1019, 1203, 1213, 1318
FaqI	GGGAC	1 cut(s)	1085
FatI	CATG	4 cut(s)	1015, 1199, 1209, 1314
FauI	CCCGC	2 cut(s)	48, 1015
FauNDI	CATATG	1 cut(s)	465
Fnu4HI	GCNGC	2 cut(s)	679, 1020
FokI	GGATG	3 cut(s)	356, 1060, 1292
FriOI	GRGCYC	2 cut(s)	82, 206
Fsp4HI	GCNGC	2 cut(s)	679, 1020
FspBI	CTAG	1 cut(s)	566
GlaI	GCGC	2 cut(s)	1092, 1094
GluI	GCNGC	2 cut(s)	679, 1020
GsaI	CCCAGC	2 cut(s)	90, 768
GsuI	CTGGAG	1 cut(s)	833
HaeIII	GGCC	2 cut(s)	178, 1066
HapII	CCGG	5 cut(s)	29, 257, 428, 856, 1059
HhaI	GCGC	2 cut(s)	1093, 1095
Hin1I	GRCGYC	1 cut(s)	69
Hin1II	CATG	4 cut(s)	1019, 1203, 1213, 1318
Hin6I	GCGC	2 cut(s)	1091, 1093
HinP1I	GCGC	2 cut(s)	1091, 1093
HinfI	GANTC	5 cut(s)	218, 282, 482, 769, 1112
HpaII	CCGG	5 cut(s)	29, 257, 428, 856, 1059
HphI	GGTGA	2 cut(s)	180, 1010
Hpy166II	GTNNAC	3 cut(s)	294, 624, 1260
Hpy188I	TCNGA	6 cut(s)	158, 367, 487, 801, 1047, 1179
Hpy188III	TCNNGA	6 cut(s)	410, 500, 744, 812, 897, 1059
Hpy8I	GTNNAC	3 cut(s)	294, 624, 1260
Hpy99I	CGWCG	3 cut(s)	71, 74, 196
HpyAV	CCTTC	3 cut(s)	313, 1056, 1211
HpyCH4III	ACNGT	5 cut(s)	37, 192, 242, 401, 649
HpyCH4IV	ACGT	3 cut(s)	69, 620, 808
HpyF10VI	GCNNNNNNNGC	6 cut(s)	29, 132, 175, 536, 591, 606
HpyF3I	CTNAG	2 cut(s)	200, 205
HpySE526I	ACGT	3 cut(s)	69, 620, 808
Hsp92I	GRCGYC	1 cut(s)	69
Hsp92II	CATG	4 cut(s)	1019, 1203, 1213, 1318
HspAI	GCGC	2 cut(s)	1091, 1093
Kpn2I	TCCGGA	1 cut(s)	1058
Kzo9I	GATC	3 cut(s)	460, 1123, 1204
LmnI	GCTCC	1 cut(s)	814
Lsp1109I	GCAGC	2 cut(s)	690, 1006
LweI	GCATC	4 cut(s)	122, 186, 526, 959
MaeI	CTAG	1 cut(s)	566
MaeII	ACGT	3 cut(s)	69, 620, 808
MaeIII	GTNAC	5 cut(s)	356, 507, 804, 851, 998
MalI	GATC	3 cut(s)	462, 1125, 1206
MboI	GATC	3 cut(s)	460, 1123, 1204
MboII	GAAGA	5 cut(s)	699, 974, 1043, 1293, 1295
MflI	RGATCY	2 cut(s)	1123, 1204
MhlI	GDGCHC	3 cut(s)	61, 82, 206
MluCI	AATT	9 cut(s)	12, 226, 546, 655, 785, 1010, 1144, 1157, 1305
MlyI	GAGTC	2 cut(s)	778, 1121
MmeI	TCCRAC	1 cut(s)	899
MnlI	CCTC	7 cut(s)	13, 189, 298, 658, 857, 952, 1072
Mph1103I	ATGCAT	2 cut(s)	137, 524
MroI	TCCGGA	1 cut(s)	1058
MseI	TTAA	3 cut(s)	248, 735, 1308
MslI	CAYNNNNRTG	1 cut(s)	1255
MspI	CCGG	5 cut(s)	29, 257, 428, 856, 1059
MspR9I	CCNGG	2 cut(s)	437, 1073
Mva1269I	GAATGC	3 cut(s)	524, 609, 1269
MvaI	CCWGG	2 cut(s)	437, 1073
MvnI	CGCG	1 cut(s)	1093
MwoI	GCNNNNNNNGC	6 cut(s)	29, 132, 175, 536, 591, 606
NdeI	CATATG	1 cut(s)	465
NdeII	GATC	3 cut(s)	460, 1123, 1204
NlaIII	CATG	4 cut(s)	1019, 1203, 1213, 1318
NlaIV	GGNNCC	2 cut(s)	671, 1057
NmuCI	GTSAC	2 cut(s)	507, 998
NsiI	ATGCAT	2 cut(s)	137, 524
OliI	CACNNNNGTG	1 cut(s)	1255
PaeR7I	CTCGAG	1 cut(s)	895
PauI	GCGCGC	1 cut(s)	1091
PceI	AGGCCT	1 cut(s)	1066
PctI	GAATGC	3 cut(s)	524, 609, 1269
PfeI	GAWTC	3 cut(s)	218, 282, 482
PfoI	TCCNGGA	1 cut(s)	435
PinAI	ACCGGT	1 cut(s)	427
PkrI	GCNGC	2 cut(s)	680, 1021
PleI	GAGTC	2 cut(s)	777, 1120
PpsI	GAGTC	2 cut(s)	777, 1120
Psp124BI	GAGCTC	2 cut(s)	82, 206
Psp6I	CCWGG	2 cut(s)	435, 1071
PspFI	CCCAGC	2 cut(s)	86, 764
PspGI	CCWGG	2 cut(s)	435, 1071
PspN4I	GGNNCC	2 cut(s)	671, 1057
PsuI	RGATCY	2 cut(s)	1123, 1204
PteI	GCGCGC	1 cut(s)	1091
RsaI	GTAC	4 cut(s)	623, 893, 1007, 1083
RsaNI	GTAC	4 cut(s)	622, 892, 1006, 1082
RseI	CAYNNNNRTG	1 cut(s)	1255
SacI	GAGCTC	2 cut(s)	82, 206
SaqAI	TTAA	3 cut(s)	248, 735, 1308
SatI	GCNGC	2 cut(s)	679, 1020
Sau3AI	GATC	3 cut(s)	460, 1123, 1204
ScaI	AGTACT	1 cut(s)	893
SchI	GAGTC	2 cut(s)	778, 1121
ScrFI	CCNGG	2 cut(s)	437, 1073
SduI	GDGCHC	3 cut(s)	61, 82, 206
SfaNI	GCATC	4 cut(s)	122, 186, 526, 959
Sfr274I	CTCGAG	1 cut(s)	895
SlaI	CTCGAG	1 cut(s)	895
SmiMI	CAYNNNNRTG	1 cut(s)	1255
SmlI	CTYRAG	2 cut(s)	895, 1274
SmoI	CTYRAG	2 cut(s)	895, 1274
Sse9I	AATT	9 cut(s)	12, 226, 546, 655, 785, 1010, 1144, 1157, 1305
SseBI	AGGCCT	1 cut(s)	1066
SsiI	CCGC	5 cut(s)	55, 142, 341, 607, 1022
SspMI	CTAG	1 cut(s)	566
SstI	GAGCTC	2 cut(s)	82, 206
StuI	AGGCCT	1 cut(s)	1066
StyD4I	CCNGG	2 cut(s)	435, 1071
TaaI	ACNGT	5 cut(s)	37, 192, 242, 401, 649
TaiI	ACGT	3 cut(s)	72, 623, 811
TaqI	TCGA	4 cut(s)	76, 194, 791, 896
TasI	AATT	9 cut(s)	12, 226, 546, 655, 785, 1010, 1144, 1157, 1305
TatI	WGTACW	2 cut(s)	891, 1005
TfiI	GAWTC	3 cut(s)	218, 282, 482
Tru1I	TTAA	3 cut(s)	248, 735, 1308
Tru9I	TTAA	3 cut(s)	248, 735, 1308
TscAI	CASTG	2 cut(s)	516, 1252
TseFI	GTSAC	2 cut(s)	507, 998
TseI	GCWGC	2 cut(s)	678, 1019
Tsp45I	GTSAC	2 cut(s)	507, 998
TspDTI	ATGAA	6 cut(s)	482, 495, 840, 948, 1004, 1296
TspRI	CASTG	2 cut(s)	516, 1252
XagI	CCTNNNNNAGG	1 cut(s)	1076
XapI	RAATTY	3 cut(s)	546, 655, 1010
XhoI	CTCGAG	1 cut(s)	895
XspI	CTAG	1 cut(s)	566
ZraI	GACGTC	1 cut(s)	70
ZrmI	AGTACT	1 cut(s)	893
Zsp2I	ATGCAT	2 cut(s)	137, 524

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.